HHsearch alignment for GI: 254780470 and conserved domain: PRK12442
>PRK12442 translation initiation factor IF-1; Reviewed.
Probab=100.00 E-value=6.4e-36 Score=229.92 Aligned_cols=72 Identities=53% Similarity=0.930 Sum_probs=70.1
Q ss_pred CCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf 97564599978999815898179998166776533323354433344555544455555445556882899991251120
Q gi|254780470|r 1 MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRK 80 (110)
Q Consensus 1 M~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk 80 (110)
T Consensus 1 MaKed~ie~eG~V~e~lpn~~FrV~L--------------------------------------eNg~~Vla~~sGKmR~ 42 (87)
T PRK12442 1 MAKEELIELDGIVDEVLPDSRYRVTL--------------------------------------ENGVEVGAYASGRMRK 42 (87)
T ss_pred CCCCCEEEEEEEEEEECCCCEEEEEE--------------------------------------CCCCEEEEEEECCEEE
T ss_conf 98655499878999987998799997--------------------------------------7998999998550133
Q ss_pred EEEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 164770299699997467578435988429
Q gi|254780470|r 81 HRIRISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 81 ~~IRIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
T Consensus 43 ~~IrIl~GD~V~VElSpYDltkGRIvyR~k 72 (87)
T PRK12442 43 HRIRILAGDRVTLELSPYDLTKGRINFRHK 72 (87)
T ss_pred EEEEECCCCEEEEEECCCCCCCEEEEEEEC
T ss_conf 027776899899998877788748998847