HHsearch alignment for GI: 254780470 and conserved domain: TIGR00008
>TIGR00008 infA translation initiation factor IF-1; InterPro: IPR004368 This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (IPR003029 from INTERPRO).; GO: 0003743 translation initiation factor activity, 0006413 translational initiation.
Probab=99.97 E-value=1.5e-30 Score=198.65 Aligned_cols=69 Identities=54% Similarity=0.837 Sum_probs=66.6
Q ss_pred CCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 56459997899981589817999816677653332335443334455554445555544555688289999125112016
Q gi|254780470|r 3 KEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHR 82 (110)
Q Consensus 3 Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~ 82 (110)
T Consensus 1 K~~~i~~~G~v~e~l~n~~f~V~L--------------------------------------eN~~~v~a~iSGk~r~~~ 42 (69)
T TIGR00008 1 KEDKIEVEGKVVESLPNAMFRVEL--------------------------------------ENGHEVLAHISGKIRKNY 42 (69)
T ss_pred CCCEEEECCEEEECCCCCEEEEEE--------------------------------------CCCCEEEEEECCEEECCE
T ss_conf 975277423898543698269994--------------------------------------799789899710341351
Q ss_pred EEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 477029969999746757843598842
Q gi|254780470|r 83 IRISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 83 IRIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
T Consensus 43 iriLpGD~V~ve~SpYdl~~GRI~yR~ 69 (69)
T TIGR00008 43 IRILPGDKVKVELSPYDLTRGRIIYRL 69 (69)
T ss_pred EEECCCCEEEEEECCCCCCCCCEEEEC
T ss_conf 755479878998713648775087749