HHsearch alignment for GI: 254780470 and conserved domain: TIGR00008

>TIGR00008 infA translation initiation factor IF-1; InterPro: IPR004368 This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (IPR003029 from INTERPRO).; GO: 0003743 translation initiation factor activity, 0006413 translational initiation.
Probab=99.97  E-value=1.5e-30  Score=198.65  Aligned_cols=69  Identities=54%  Similarity=0.837  Sum_probs=66.6

Q ss_pred             CCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf             56459997899981589817999816677653332335443334455554445555544555688289999125112016
Q gi|254780470|r    3 KEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHR   82 (110)
Q Consensus         3 Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~   82 (110)
T Consensus         1 K~~~i~~~G~v~e~l~n~~f~V~L--------------------------------------eN~~~v~a~iSGk~r~~~   42 (69)
T TIGR00008         1 KEDKIEVEGKVVESLPNAMFRVEL--------------------------------------ENGHEVLAHISGKIRKNY   42 (69)
T ss_pred             CCCEEEECCEEEECCCCCEEEEEE--------------------------------------CCCCEEEEEECCEEECCE
T ss_conf             975277423898543698269994--------------------------------------799789899710341351


Q ss_pred             EEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf             477029969999746757843598842
Q gi|254780470|r   83 IRISLGDKVKVAMNPYDMTRARITYRF  109 (110)
Q Consensus        83 IRIl~GDkV~Ve~SPYDLtkGRItyR~  109 (110)
T Consensus        43 iriLpGD~V~ve~SpYdl~~GRI~yR~   69 (69)
T TIGR00008        43 IRILPGDKVKVELSPYDLTRGRIIYRL   69 (69)
T ss_pred             EEECCCCEEEEEECCCCCCCCCEEEEC
T ss_conf             755479878998713648775087749