HHsearch alignment for GI: 254780470 and conserved domain: TIGR02063
>TIGR02063 RNase_R ribonuclease R; InterPro: IPR011805 This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in Escherichia coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Not included in this entry are shorter, divergent forms from the Chlamydiae and the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans , .; GO: 0003723 RNA binding, 0004518 nuclease activity.
Probab=92.04 E-value=0.71 Score=26.26 Aligned_cols=71 Identities=30% Similarity=0.494 Sum_probs=50.8
Q ss_pred EEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CEEEEEECCC
Q ss_conf 9997899981589817999816677653332335443334455554445555544555688---------2899991251
Q gi|254780470|r 7 LEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDN---------AVVIAYTAGR 77 (110)
Q Consensus 7 ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~---------~~VlA~isGK 77 (110)
T Consensus 674 ~~f~G~Is~VT~FG~F-VeL~~~-------------------------~ieGLVhI~~L~dDYY~Fd~~~~~L~G~R~gk 727 (755)
T TIGR02063 674 EEFEGVISGVTSFGLF-VELENN-------------------------TIEGLVHISTLKDDYYVFDEKGLALVGERTGK 727 (755)
T ss_pred CEEEEEEEEEEEEEEE-EEECCC-------------------------EEEEEEECCCCCCCCCEECCCCCEEEEECCCC
T ss_conf 6887799756620138-973674-------------------------11102632789885630752207886432687
Q ss_pred EEEEEEEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 12016477029969999746757843598842
Q gi|254780470|r 78 MRKHRIRISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 78 mRk~~IRIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
T Consensus 728 ----~--frLGD~v~V~V~~ad~~~~~idF~L 753 (755)
T TIGR02063 728 ----V--FRLGDRVKVRVVKADLDTGKIDFEL 753 (755)
T ss_pred ----E--EECCCEEEEEEEEECCCCCEEEEEE
T ss_conf ----3--7248748999999610336698997