HHsearch alignment for GI: 254780470 and conserved domain: smart00652
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=98.62 E-value=2.9e-07 Score=63.38 Aligned_cols=68 Identities=29% Similarity=0.409 Sum_probs=60.5
Q ss_pred CCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 56459997899981589817999816677653332335443334455554445555544555688289999125112016
Q gi|254780470|r 3 KEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHR 82 (110)
Q Consensus 3 Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~ 82 (110)
T Consensus 2 ~ee~-e~y~~V~k~lG~~~~~V~c--------------------------------------~dg~~rl~~i~gk~rk-r 41 (83)
T smart00652 2 KEDG-QEIAQVVKMLGNGRLEVMC--------------------------------------ADGKERLARIPGKMRK-K 41 (83)
T ss_pred CCCC-CEEEEEEEECCCCEEEEEE--------------------------------------CCCCEEEEEECHHCEE-E
T ss_conf 8788-0999999944996799991--------------------------------------9999999998303030-2
Q ss_pred EEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 4770299699997467578435988429
Q gi|254780470|r 83 IRISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 83 IRIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
T Consensus 42 ~wi~~Gd~VlV~~r~~~~~K~DIi~~y~ 69 (83)
T smart00652 42 VWIRRGDIVLVDPWDFQDVKADIIYKYT 69 (83)
T ss_pred EEEECCCEEEEEECCCCCCEEEEEEECC
T ss_conf 7984799999981367784699999479