HHsearch alignment of GI: 254780470 and MMDB domain: 1ah9_A_
>1ah9_A (A:) IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli}
Probab=99.93 E-value=5.5e-27 Score=177.64 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=68.9
Q ss_pred CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r 2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH 81 (110)
Q Consensus 2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~ 81 (110)
|||+.+|++|+|+++|||++|+|+| +||+.++||++||||++
T Consensus 1 aK~~~~e~~G~V~~~L~~~~f~V~l--------------------------------------~dg~~~~a~i~GKmRk~ 42 (71)
T 1ah9_A 1 AKEDNIEMQGTVLETLPNTMFRVEL--------------------------------------ENGHVVTAHISGKMRKN 42 (71)
T ss_dssp CCSCCEECCEEEEEECSSSEEEEEE--------------------------------------TTSCEEEEEECSSGGGT
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEE--------------------------------------CCCCEEEEECCCHHHEE
T ss_conf 9863389999999986997899995--------------------------------------79979999846423302
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 64770299699997467578435988429
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
+|+|++||+|.||+||||++||||+||||
T Consensus 43 ri~I~~GD~V~Ve~~~yd~~kgrIi~Ryr 71 (71)
T 1ah9_A 43 YIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp TCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEEECC
T ss_conf 79964999999997766799398999749