HHsearch alignment of GI: 254780470 and MMDB domain: 1ah9_A_

>1ah9_A (A:) IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli}
Probab=99.93  E-value=5.5e-27  Score=177.64  Aligned_cols=71  Identities=48%  Similarity=0.793  Sum_probs=68.9

Q ss_pred             CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf             75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r    2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH   81 (110)
Q Consensus         2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~   81 (110)
                      |||+.+|++|+|+++|||++|+|+|                                      +||+.++||++||||++
T Consensus         1 aK~~~~e~~G~V~~~L~~~~f~V~l--------------------------------------~dg~~~~a~i~GKmRk~   42 (71)
T 1ah9_A            1 AKEDNIEMQGTVLETLPNTMFRVEL--------------------------------------ENGHVVTAHISGKMRKN   42 (71)
T ss_dssp             CCSCCEECCEEEEEECSSSEEEEEE--------------------------------------TTSCEEEEEECSSGGGT
T ss_pred             CCCCCEEEEEEEEEECCCCEEEEEE--------------------------------------CCCCEEEEECCCHHHEE
T ss_conf             9863389999999986997899995--------------------------------------79979999846423302


Q ss_pred             EEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf             64770299699997467578435988429
Q gi|254780470|r   82 RIRISLGDKVKVAMNPYDMTRARITYRFK  110 (110)
Q Consensus        82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~K  110 (110)
                      +|+|++||+|.||+||||++||||+||||
T Consensus        43 ri~I~~GD~V~Ve~~~yd~~kgrIi~Ryr   71 (71)
T 1ah9_A           43 YIRILTGDKVTVELTPYDLSKGRIVFRSR   71 (71)
T ss_dssp             TCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred             EEEECCCCEEEEEECCCCCCCEEEEEECC
T ss_conf             79964999999997766799398999749