HHsearch results for GI: 254780470 and protein with PDBid: 1ah9_A
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.94 E-value=2.6e-28 Score=184.49 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=68.7
Q ss_pred CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r 2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH 81 (110)
Q Consensus 2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~ 81 (110)
||||.||++|+|+|+|||++|+|+| +||+.++||+|||||++
T Consensus 1 aKed~ie~~G~V~e~lg~~~f~V~l--------------------------------------~dg~~~la~i~GkmRk~ 42 (71)
T 1ah9_A 1 AKEDNIEMQGTVLETLPNTMFRVEL--------------------------------------ENGHVVTAHISGKMRKN 42 (71)
T ss_dssp CCSCCEECCEEEEEECSSSEEEEEE--------------------------------------TTSCEEEEEECSSGGGT
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEE--------------------------------------CCCCEEEEEECCHHEEE
T ss_conf 9864489999999988996999998--------------------------------------89979999937345021
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 64770299699997467578435988429
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
+|+|++||+|.|||||||++||||+||||
T Consensus 43 ri~i~~GD~V~Vel~~yd~~kgrIi~R~k 71 (71)
T 1ah9_A 43 YIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp TCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEEECC
T ss_conf 49976999999997755699588999839