Query gi|254780470|ref|YP_003064883.1| translation initiation factor IF-1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs 112 out of 663
Neff 2.4
Searched_HMMs 23785
Date Mon May 30 11:48:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780470.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ah9_A IF1, initiation factor 99.9 2.6E-28 1.1E-32 184.5 5.4 71 2-110 1-71 (71)
2 3i4o_A Translation initiation 99.9 1E-27 4.4E-32 181.0 5.2 72 1-110 7-79 (79)
3 1hr0_W Translation initiation 99.9 2.7E-26 1.1E-30 172.7 -0.5 70 2-109 2-71 (71)
4 1jt8_A EIF-1A, probable transl 99.3 7.4E-13 3.1E-17 94.6 3.5 71 1-110 14-85 (102)
5 2oqk_A Putative translation in 99.2 3.5E-11 1.5E-15 84.9 5.7 65 7-110 32-96 (117)
6 1d7q_A Translation initiation 99.1 2.1E-10 9E-15 80.3 7.7 67 5-110 29-95 (143)
7 2dgy_A MGC11102 protein; EIF-1 97.6 0.00019 8.2E-09 45.7 7.7 64 8-110 16-80 (111)
8 1t9h_A YLOQ, probable GTPase E 96.2 0.018 7.6E-07 34.3 7.6 62 10-109 12-73 (307)
9 2yv5_A YJEQ protein; hydrolase 95.9 0.031 1.3E-06 32.9 7.5 66 1-109 1-66 (302)
10 1u0l_A Probable GTPase ENGC; p 95.8 0.025 1.1E-06 33.4 6.7 62 8-109 10-71 (301)
11 2id0_A Exoribonuclease 2; RNAs 94.4 0.12 5.1E-06 29.5 6.8 76 8-109 563-642 (644)
12 2vnu_D Exosome complex exonucl 89.8 0.68 2.8E-05 25.1 5.8 83 7-110 671-760 (760)
13 2rcn_A Probable GTPase ENGC; Y 86.7 1.8 7.6E-05 22.7 7.1 51 55-109 55-109 (358)
14 2wp8_J Exosome complex exonucl 85.6 2.1 8.6E-05 22.3 7.2 83 7-110 888-977 (977)
15 2k52_A Uncharacterized protein 75.1 4.8 0.0002 20.2 6.0 68 4-110 4-71 (80)
16 2r7d_A Ribonuclease II family 70.0 6.3 0.00027 19.5 7.3 55 8-109 406-460 (469)
17 2khi_A 30S ribosomal protein S 58.5 11 0.00044 18.2 5.4 26 85-110 76-101 (115)
18 2ifr_A Scytalidopepsin B; enzy 30.2 24 0.001 16.1 2.2 27 82-108 80-106 (206)
19 1z54_A Probable thioesterase; 29.8 24 0.00099 16.2 2.1 27 84-110 66-92 (132)
20 3bzc_A TEX; helix-turn-helix, 28.4 18 0.00078 16.8 1.4 26 84-109 698-723 (785)
21 1y43_B Aspergillopepsin II hea 26.8 30 0.0013 15.5 2.2 27 82-108 54-80 (173)
22 1q8k_A Eukaryotic translation 26.4 36 0.0015 15.1 3.9 75 2-110 11-85 (308)
23 1ssf_A Transformation related 23.8 40 0.0017 14.8 4.6 27 5-31 22-48 (156)
24 2k4k_A GSP13, general stress p 23.7 40 0.0017 14.8 5.7 67 8-109 10-76 (130)
25 1kl9_A Eukaryotic translation 21.4 45 0.0019 14.5 7.0 69 9-110 19-87 (182)
No 1
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.94 E-value=2.6e-28 Score=184.49 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=68.7
Q ss_pred CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r 2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH 81 (110)
Q Consensus 2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~ 81 (110)
||||.||++|+|+|+|||++|+|+| +||+.++||+|||||++
T Consensus 1 aKed~ie~~G~V~e~lg~~~f~V~l--------------------------------------~dg~~~la~i~GkmRk~ 42 (71)
T 1ah9_A 1 AKEDNIEMQGTVLETLPNTMFRVEL--------------------------------------ENGHVVTAHISGKMRKN 42 (71)
T ss_dssp CCSCCEECCEEEEEECSSSEEEEEE--------------------------------------TTSCEEEEEECSSGGGT
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEE--------------------------------------CCCCEEEEEECCHHEEE
T ss_conf 9864489999999988996999998--------------------------------------89979999937345021
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 64770299699997467578435988429
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
+|+|++||+|.|||||||++||||+||||
T Consensus 43 ri~i~~GD~V~Vel~~yd~~kgrIi~R~k 71 (71)
T 1ah9_A 43 YIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp TCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEEECC
T ss_conf 49976999999997755699588999839
No 2
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1e-27 Score=180.96 Aligned_cols=72 Identities=47% Similarity=0.794 Sum_probs=68.4
Q ss_pred CCC-CCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE
Q ss_conf 975-6459997899981589817999816677653332335443334455554445555544555688289999125112
Q gi|254780470|r 1 MPK-EETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMR 79 (110)
Q Consensus 1 M~K-ed~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmR 79 (110)
||| |+.||++|+|+|+|||++|+|+|+ ||++++||+|||||
T Consensus 7 makke~~ie~~G~V~e~l~~~~f~V~l~--------------------------------------ng~~~~a~i~GkmR 48 (79)
T 3i4o_A 7 MAKKDGAIEVEGRVVEPLPNAMFRIELE--------------------------------------NGHKVLAHISGKMR 48 (79)
T ss_dssp -----CCSEEEEEEEEEETTTEEEEEET--------------------------------------TSCEEEEEECHHHH
T ss_pred CCCCCCEEEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCHHH
T ss_conf 5664251999999999889978999979--------------------------------------99999999576364
Q ss_pred EEEEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 0164770299699997467578435988429
Q gi|254780470|r 80 KHRIRISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 80 k~~IRIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
+++|+|++||+|.||+||||++||||+||||
T Consensus 49 k~ri~i~~GD~V~Ve~~~yd~~kgrIi~Ryk 79 (79)
T 3i4o_A 49 QHYIRILPEDRVVVELSPYDLSRGRIVYRYK 79 (79)
T ss_dssp HTTCCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred HCEEEECCCCEEEEEECCCCCCCEEEEEECC
T ss_conf 0608866999999997765789488999829
No 3
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=99.91 E-value=2.7e-26 Score=172.73 Aligned_cols=70 Identities=50% Similarity=0.822 Sum_probs=65.6
Q ss_pred CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r 2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH 81 (110)
Q Consensus 2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~ 81 (110)
.|+|.|+++|+|+|+|||++|+|+|+ ||+.++||+|||||++
T Consensus 2 kk~d~i~~~G~V~e~lg~~~f~V~l~--------------------------------------ng~~~~a~i~GkmRk~ 43 (71)
T 1hr0_W 2 KEKDTIRTEGVVTEALPNATFRVKLD--------------------------------------SGPEILAYISGKMRMH 43 (71)
T ss_dssp CCSCCCCCEEECCCCCTTTBCCCEES--------------------------------------SSCBCCCEECHHHHHT
T ss_pred CCCCEEEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEECCHHHHEE
T ss_conf 75327999899999889989999988--------------------------------------9999999878675110
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 6477029969999746757843598842
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
+|+|++||+|.|||||||++||||+||-
T Consensus 44 ri~I~~GD~V~Vel~~yd~~kgrIi~R~ 71 (71)
T 1hr0_W 44 YIRILPGDRVVVEITPYDPTRGRIVYRK 71 (71)
T ss_dssp CCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEECC
T ss_conf 5883699999999676679938689719
No 4
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=99.30 E-value=7.4e-13 Score=94.63 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=64.4
Q ss_pred CCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf 97564599978999815898179998166776533323354433344555544455555445556882899991251120
Q gi|254780470|r 1 MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRK 80 (110)
Q Consensus 1 M~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk 80 (110)
||+++-.|+-|+|+++|+|++|+|.+. ||...+|++.||||+
T Consensus 14 lp~~ee~e~y~~V~k~lG~~~~~V~c~--------------------------------------dg~~rl~~irGK~Rk 55 (102)
T 1jt8_A 14 IPRKEENEILGIIEQMLGASRVRVRCL--------------------------------------DGKTRLGRIPGRLKN 55 (102)
T ss_dssp CSCCSSCCEEEEEECSSCSSEEEEEEE--------------------------------------TTEEEEEECCHHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCCCCC
T ss_conf 799978989999999839988999979--------------------------------------999999998666111
Q ss_pred EEEEEECCCEEEEEECCCCC-CCCEEEEEEC
Q ss_conf 16477029969999746757-8435988429
Q gi|254780470|r 81 HRIRISLGDKVKVAMNPYDM-TRARITYRFK 110 (110)
Q Consensus 81 ~~IRIl~GDkV~Ve~SPYDL-tkGRItyR~K 110 (110)
+++|.+||.|.|++++|+. +||+|+|||.
T Consensus 56 -~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~ 85 (102)
T 1jt8_A 56 -RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85 (102)
T ss_dssp -HHCCCSCEEEEECCBCCTTSEEEEEEEESS
T ss_pred -CEEECCCCEEEEEEEECCCCCEEEEEEECC
T ss_conf -249649999999972178996699999989
No 5
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation factor (EIF), SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.15 E-value=3.5e-11 Score=84.90 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=59.6
Q ss_pred EEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEE
Q ss_conf 99978999815898179998166776533323354433344555544455555445556882899991251120164770
Q gi|254780470|r 7 LEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRIS 86 (110)
Q Consensus 7 ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl 86 (110)
-|+-|+|+++|+|++|+|.+. ||...+|++.||||+ +++|.
T Consensus 32 ~e~ya~V~k~lG~~~~~V~~~--------------------------------------dg~~~l~~irgkfrk-r~~i~ 72 (117)
T 2oqk_A 32 GQEYGQVQRMLGNGRLDAYCF--------------------------------------DGQKRLCHIRGKMRK-KVWVN 72 (117)
T ss_dssp TEEEEEEEEEEETTEEEEEET--------------------------------------TSCEEEEECCHHHHH-HSCCC
T ss_pred CEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCHHCC-CEEEC
T ss_conf 858999999749978999978--------------------------------------999999998512107-52856
Q ss_pred CCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 299699997467578435988429
Q gi|254780470|r 87 LGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 87 ~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
+||-|.|++++|+.+||.|+|+|.
T Consensus 73 ~Gd~VlV~~r~~e~~k~dIi~~Y~ 96 (117)
T 2oqk_A 73 PGDIVLVSLRDFQDSKGDIILKYT 96 (117)
T ss_dssp TTCEEEEEECTTCTTEEEEEEECC
T ss_pred CCCEEEEEEECCCCCEEEEEEECC
T ss_conf 999999954528886899999889
No 6
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.10 E-value=2.1e-10 Score=80.34 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=60.1
Q ss_pred CEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 45999789998158981799981667765333233544333445555444555554455568828999912511201647
Q gi|254780470|r 5 ETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIR 84 (110)
Q Consensus 5 d~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IR 84 (110)
+--|+-|+|+++|+|++|.|... +|...+|++.||||+ +++
T Consensus 29 ee~e~y~~V~k~lG~~~~~V~~~--------------------------------------dg~~rl~~irgk~rk-r~~ 69 (143)
T 1d7q_A 29 EDGQEYAQVIKMLGNGRLEAMCF--------------------------------------DGVKRLCHIRGKLRK-KVW 69 (143)
T ss_dssp CTTEEEEEEEEECSSSEEEEEET--------------------------------------TTEEEEEECCSGGGG-SCC
T ss_pred CCCEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCCCEE-EEE
T ss_conf 99818999999749977999978--------------------------------------999999996552200-137
Q ss_pred EECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 70299699997467578435988429
Q gi|254780470|r 85 ISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 85 Il~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
|.+||-|.|++.+|+.+|+.|+|+|.
T Consensus 70 i~~Gd~VlV~~r~~~~~k~DIl~~Y~ 95 (143)
T 1d7q_A 70 INTSDIILVGLRDYQDNKADVILKYN 95 (143)
T ss_dssp CCTTCEEEEECSSSSSSCCEEEEEEC
T ss_pred ECCCCEEEEECCCCCCCEEEEEEECC
T ss_conf 53899999943678686899999779
No 7
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=0.00019 Score=45.71 Aligned_cols=64 Identities=19% Similarity=0.138 Sum_probs=54.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf 99789998158981799981667765333233544333445555444555554455568828999912511201647702
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISL 87 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~ 87 (110)
+.=+.|+.+|-|.+|.|... ||...+|.+.||||+ ++.|-.
T Consensus 16 q~ia~V~~~~G~~~~~V~c~--------------------------------------dg~~rl~~ipgKfRk-r~wi~~ 56 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETA--------------------------------------QGQRFLVSMPSKYRK-NIWIKR 56 (111)
T ss_dssp CEEEEEEECCSSSEEEEECT--------------------------------------TSCEEEEECCTTCCS-CCCCCS
T ss_pred CEEEEEEEECCCCEEEEECC--------------------------------------CCCEEEEEECHHHHC-CEEECC
T ss_conf 69999987039946999969--------------------------------------999999997057334-600007
Q ss_pred CCEEEEEE-CCCCCCCCEEEEEEC
Q ss_conf 99699997-467578435988429
Q gi|254780470|r 88 GDKVKVAM-NPYDMTRARITYRFK 110 (110)
Q Consensus 88 GDkV~Ve~-SPYDLtkGRItyR~K 110 (110)
||-|.|.. ..++-.|+-|+|+|.
T Consensus 57 Gd~VLV~~~~~~~~~K~DIi~~y~ 80 (111)
T 2dgy_A 57 GDFLIVDPIEEGEKVKAEISFVLC 80 (111)
T ss_dssp SCEEEEEECSSCSSCCEEEEEECC
T ss_pred CCEEEEEECCCCCCCEEEEEEECC
T ss_conf 999999862027883499999849
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.23 E-value=0.018 Score=34.26 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=46.7
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCC
Q ss_conf 78999815898179998166776533323354433344555544455555445556882899991251120164770299
Q gi|254780470|r 10 SGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISLGD 89 (110)
Q Consensus 10 ~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~GD 89 (110)
+|.|+...- ..|.|..... ..+.++.|.+.|++|+..+..++||
T Consensus 12 kG~Vi~~~~-~~y~V~~e~~-----------------------------------~~~~~~~c~~rG~~r~~~~~pvVGD 55 (307)
T 1t9h_A 12 EGKIIKALS-GFYYVLDESE-----------------------------------DSDKVIQCRGRGIFRKNKITPLVGD 55 (307)
T ss_dssp EEEEEEEET-TEEEEEECSS-----------------------------------SSCEEEEEESCSSCCSCCCCCCBTC
T ss_pred CEEEEEEEC-CEEEEEECCC-----------------------------------CCCEEEEEEECCHHCCCCCCCCCCE
T ss_conf 618999999-9999986468-----------------------------------8875999997632104799865437
Q ss_pred EEEEEECCCCCCCCEEEEEE
Q ss_conf 69999746757843598842
Q gi|254780470|r 90 KVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 90 kV~Ve~SPYDLtkGRItyR~ 109 (110)
+|.++ +.+-+.|.|.-.+
T Consensus 56 ~V~~~--~~~~~~~~I~~il 73 (307)
T 1t9h_A 56 YVVYQ--AENDKEGYLMEIK 73 (307)
T ss_dssp EEEEE--CCTTSCEEEEEEC
T ss_pred EEEEE--ECCCCEEEEEEEE
T ss_conf 99999--7799817999981
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.89 E-value=0.031 Score=32.88 Aligned_cols=66 Identities=24% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf 97564599978999815898179998166776533323354433344555544455555445556882899991251120
Q gi|254780470|r 1 MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRK 80 (110)
Q Consensus 1 M~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk 80 (110)
|++.+.. .|.|+.... ..|.|.+. ++|.++.|.+.|++++
T Consensus 1 m~~~~~~--~G~Vi~~~~-~~~~V~~~-------------------------------------~~g~~~~~~~rg~~~~ 40 (302)
T 2yv5_A 1 MGKKELK--RGLVVDREA-QMIGVYLF-------------------------------------EDGKTYRGIPRGKVLK 40 (302)
T ss_dssp CCSCCCE--EEEEEEEET-TEEEEEET-------------------------------------TTCCEEEEEECSSSTT
T ss_pred CCCCCCC--CEEEEEEEC-CEEEEEEC-------------------------------------CCCCEEEEEECCCCCC
T ss_conf 9723356--569999879-89999985-------------------------------------7992999997510146
Q ss_pred EEEEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 16477029969999746757843598842
Q gi|254780470|r 81 HRIRISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 81 ~~IRIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
+.++++||+|.++.. |-.+|.|+..+
T Consensus 41 -~~~~vVGD~V~~~~~--~~~~~~I~~i~ 66 (302)
T 2yv5_A 41 -KTKIYAGDYVWGEVV--DPNTFAIEEVE 66 (302)
T ss_dssp -SSCCCBTCEEEEEEE--ETTEEEEEEEC
T ss_pred -CCCCCCCCEEEEEEC--CCCCEEEEEEE
T ss_conf -899875718999973--79837998983
No 10
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.81 E-value=0.025 Score=33.45 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=46.8
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf 99789998158981799981667765333233544333445555444555554455568828999912511201647702
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISL 87 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~ 87 (110)
.-.|.|+... +..|.|+.. ++|.++.|.+.|++|+..+.+++
T Consensus 10 ~~~G~Vi~~~-~~~~~V~~~-------------------------------------d~g~~~~c~~rG~lr~~~~~~~V 51 (301)
T 1u0l_A 10 RRRGIVVSFH-SNMVTVEDE-------------------------------------ETGERILCKLRGKFRLQNLKIYV 51 (301)
T ss_dssp CEEEEEEEEE-TTEEEEEET-------------------------------------TTCCEEEEEECGGGTTTTCCCCT
T ss_pred CCEEEEEEEE-CCEEEEEEC-------------------------------------CCCEEEEEEECCEEECCCCCCCC
T ss_conf 5208999998-989999989-------------------------------------99929999934244058998333
Q ss_pred CCEEEEEECCCCCCCCEEEEEE
Q ss_conf 9969999746757843598842
Q gi|254780470|r 88 GDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 88 GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
||.|.++ |.+-..|.|+-.+
T Consensus 52 GD~V~~~--~~~~~~~~I~~il 71 (301)
T 1u0l_A 52 GDRVEYT--PDETGSGVIENVL 71 (301)
T ss_dssp TCEEEEE--CCCSSSEEEEEEC
T ss_pred CEEEEEE--ECCCCCEEEEEEC
T ss_conf 3189998--7789928999973
No 11
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=94.40 E-value=0.12 Score=29.47 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=46.4
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CEEEEEECCC-EEEEEE
Q ss_conf 997899981589817999816677653332335443334455554445555544555688---2899991251-120164
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDN---AVVIAYTAGR-MRKHRI 83 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~---~~VlA~isGK-mRk~~I 83 (110)
.|+|+|+.+-+.+.| |+|.. +|-+|.-|++.+.. ..+...-.+. .+++.-
T Consensus 563 ~f~g~I~~v~~~G~f-V~l~~-------------------------~~~eglv~~~~L~~~~~~~~~~~~~~~~~~~~~~ 616 (644)
T 2id0_A 563 RFAAEIVDISRGGMR-VRLVD-------------------------NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET 616 (644)
T ss_dssp CEEEEEEEEETTEEE-EEETT-------------------------TCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEE
T ss_pred EEEEEEEEEECCEEE-EEEEC-------------------------CCEEEEEEHHHCCCCCCEEEECCCCEEEEECCCE
T ss_conf 588999988706099-99827-------------------------9549999834547874217751313177524975
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 77029969999746757843598842
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
..-+||+|+|.+.--|+.+++|.++-
T Consensus 617 ~~~lGd~v~V~v~~vd~~~~~I~~~p 642 (644)
T 2id0_A 617 VYKVTDVIDVTIAEVRMETRSIIARP 642 (644)
T ss_dssp EEETTCEEEEEEEEEETTTTEEEEEE
T ss_pred EEECCCEEEEEEEEEECCCCEEEEEE
T ss_conf 99369999999999834548289997
No 12
>2vnu_D Exosome complex exonuclease RRP44; rRNA processing, RNA degradation, cytoplasm, RNA-binding, RNA processing, DIS3P, nucleus, hydrolase; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=89.78 E-value=0.68 Score=25.13 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=42.0
Q ss_pred EEEEEEEEECCCCCCEEEEECCCCCCCCCCCC---CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 99978999815898179998166776533323---3544-3334455554445555544555688289999125112016
Q gi|254780470|r 7 LEFSGIVSELLPNANFRVKLITNDDDSSADCK---LDSK-VKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHR 82 (110)
Q Consensus 7 ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~---l~~~-~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~ 82 (110)
-+++|+|+.+.+++.| |.|+..--+ ..+. |.+. ..-.|- +..........|.-+..
T Consensus 671 ~~~~g~I~~V~~~G~~-V~l~~~~vE--GlV~vs~L~~d~~~~~fD----------------~~~~~l~~~~~~~~~~~- 730 (760)
T 2vnu_D 671 STETGYVIKVFNNGIV-VLVPKFGVE--GLIRLDNLTEDPNSAAFD----------------EVEYKLTFVPTNSDKPR- 730 (760)
T ss_dssp SEEEEEEEEEETTEEE-EEETTTTEE--EEEEHHHHCSCGGGCEEE----------------TTTTEEEECCTTCSSCE-
T ss_pred CEEEEEEEEEEECEEE-EEECCCCCE--EEEECCCCCCCCCCEEEC----------------HHHCEEEEEECCCCCCE-
T ss_conf 8489999999958199-998189728--999802278874331544----------------45667875531773654-
Q ss_pred EEEECCCEEEEEECCCC---CCCCEEEEEEC
Q ss_conf 47702996999974675---78435988429
Q gi|254780470|r 83 IRISLGDKVKVAMNPYD---MTRARITYRFK 110 (110)
Q Consensus 83 IRIl~GDkV~Ve~SPYD---LtkGRItyR~K 110 (110)
++-+||+|+|.+.--| ..+.||.+-+|
T Consensus 731 -~~~lGd~V~V~v~~V~~~~~~~~~id~~L~ 760 (760)
T 2vnu_D 731 -DVYVFDKVEVQVRSVMDPITSKRKAELLLK 760 (760)
T ss_dssp -EEETTCEEEEEEC--------CCEEEC---
T ss_pred -EEECCCEEEEEEEEECCCCCCCEEEEEEEC
T ss_conf -997699999999993576567615999969
No 13
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium LT2}
Probab=86.67 E-value=1.8 Score=22.66 Aligned_cols=51 Identities=12% Similarity=0.020 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEEEEECCCC----CCCCEEEEEE
Q ss_conf 555554455568828999912511201647702996999974675----7843598842
Q gi|254780470|r 55 GNDGVDPISYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYD----MTRARITYRF 109 (110)
Q Consensus 55 g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~GDkV~Ve~SPYD----LtkGRItyR~ 109 (110)
.++.-..|-.++|.++.|++-|+++ .++.||+|.++...-. -..|.|+-.+
T Consensus 55 ~~G~~~~V~~~~G~i~~C~~R~~l~----~~vvGD~V~~~~~~~~~~~~~~~GvI~~il 109 (358)
T 2rcn_A 55 RFGMHADVESADGEVHRCNIRRTIR----SLVTGDRVVWRPGKAAAEGVNVKGIVEAVH 109 (358)
T ss_dssp EETTEEEEEETTSCEEEEEECTTCC----CCCBTCEEEEECBC-------CCEEEEEEC
T ss_pred EECCEEEEECCCCCEEEEEECCCCC----CCCCCCEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf 9798899996999689998456678----989998799841776554667756999970
No 14
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=85.58 E-value=2.1 Score=22.33 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=41.2
Q ss_pred EEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 9997899981589817999816677653332335443----334455554445555544555688289999125112016
Q gi|254780470|r 7 LEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKV----KSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHR 82 (110)
Q Consensus 7 ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~----~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~ 82 (110)
-+++|+|+.+.+++.| |.+...-- +..+.+++-. +-.|- +..........|.-...
T Consensus 888 ~~~~g~I~~V~~~g~~-V~i~~~gv--EG~V~vs~L~~d~~~~~fD----------------~~~~~l~~~~~~~~~~~- 947 (977)
T 2wp8_J 888 STETGYVIKVFNNGIV-VLVPKFGV--EGLIRLDNLTEDPNSAAFD----------------EVEYKLTFVPTNSDKPR- 947 (977)
T ss_dssp CEEEEEEEEECSSEEE-EECTTTCC--EEEEEGGGTCSCGGGCEEE----------------TTTTEEEECCTTCCSCE-
T ss_pred CEEEEEEEEEEECCEE-EEECCCCC--EEEEECCCCCCCCCCEEEC----------------HHHCEEEEEEECCCCCE-
T ss_conf 8488999999958199-99808973--8999800088875332655----------------67778875550674652-
Q ss_pred EEEECCCEEEEEECCCC---CCCCEEEEEEC
Q ss_conf 47702996999974675---78435988429
Q gi|254780470|r 83 IRISLGDKVKVAMNPYD---MTRARITYRFK 110 (110)
Q Consensus 83 IRIl~GDkV~Ve~SPYD---LtkGRItyR~K 110 (110)
++-+||+|+|.++--+ ..+.||.+-+|
T Consensus 948 -~~~lgd~V~V~v~~V~~~~~~~~~~~~~l~ 977 (977)
T 2wp8_J 948 -DVYVFDKVEVQVRSVMDPITSKRKAELLLK 977 (977)
T ss_dssp -EEETTCEEEEEECCCCCSSSCCCCCCEEEC
T ss_pred -EEECCCEEEEEEEECCCCCCCCEEEEEEEC
T ss_conf -997599999999990576678625999959
No 15
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=75.05 E-value=4.8 Score=20.19 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=43.5
Q ss_pred CCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE
Q ss_conf 64599978999815898179998166776533323354433344555544455555445556882899991251120164
Q gi|254780470|r 4 EETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRI 83 (110)
Q Consensus 4 ed~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~I 83 (110)
+.--.+.|+|....+.+.| |+|.. +-+|.-|+|-.... +.+.
T Consensus 4 k~G~iv~G~V~~i~~~G~f-V~l~~--------------------------~i~Glv~~sels~~--------~~~~--- 45 (80)
T 2k52_A 4 EPGKFYKGVVTRIEKYGAF-INLNE--------------------------QVRGLLRPRDMISL--------RLEN--- 45 (80)
T ss_dssp CTTCEEEEEEEEEETTEEE-EEEET--------------------------TEEEEECGGGCSSC--------CGGG---
T ss_pred CCCCEEEEEEEEEECCEEE-EECCC--------------------------CEEEEEEHHHHCCC--------CCCC---
T ss_conf 7899999999999675799-99299--------------------------98999997993885--------1216---
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 770299699997467578435988429
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
+-+||+|++-+.-.|..++||.++++
T Consensus 46 -~~~Gd~v~vkV~~vd~~~~rI~Ls~~ 71 (80)
T 2k52_A 46 -LNVGDEIIVQAIDVRPEKREIDFKYI 71 (80)
T ss_dssp -CCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred -CCCCCCEEEEEEEEECCCCEEEEEEE
T ss_conf -88999899999999898899979977
No 16
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=70.02 E-value=6.3 Score=19.49 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=39.2
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf 99789998158981799981667765333233544333445555444555554455568828999912511201647702
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISL 87 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~ 87 (110)
.++|+|+...++ .|.|.+. +.| .....+.+ .++
T Consensus 406 ~~~g~V~~v~~~-~~~V~l~---------------------~~~----------------~e~~v~~~---------~~~ 438 (469)
T 2r7d_A 406 VWDAVVVDRRGA-QATLLIP---------------------DLA----------------FDVQVNTP---------AAP 438 (469)
T ss_dssp CEEEEEEEEETT-EEEEEEG---------------------GGT----------------EEEEEECC---------CCT
T ss_pred EEEEEEEEEECC-CEEEEEC---------------------CCC----------------EEEEEECC---------CCC
T ss_conf 899999998758-3899986---------------------884----------------69999579---------899
Q ss_pred CCEEEEEECCCCCCCCEEEEEE
Q ss_conf 9969999746757843598842
Q gi|254780470|r 88 GDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 88 GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
||+|.|.+..-|+-+.+|.+|.
T Consensus 439 Gd~v~V~v~~vd~~~~~i~~~~ 460 (469)
T 2r7d_A 439 GTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp TCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEEEECCCCCEEEEEE
T ss_conf 9989999998357779899999
No 17
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=58.51 E-value=11 Score=18.20 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.0
Q ss_pred EECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 70299699997467578435988429
Q gi|254780470|r 85 ISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 85 Il~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
.-+||.|++.+.-.|..++||..-.|
T Consensus 76 ~~vG~~v~vkVi~vD~~~~kI~LS~K 101 (115)
T 2khi_A 76 VNVGDVVEVMVLDIDEERRRISLGLK 101 (115)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEECCC
T ss_pred ECCCCEEEEEEEEEECCCCEEEEEEE
T ss_conf 06998999999999899999999875
No 18
>2ifr_A Scytalidopepsin B; enzyme-transition state analog complex, hydrolase; HET: TA2 AAR; 1.95A {Scytalidium lignicola} SCOP: b.29.1.20 PDB: 1s2b_A* 1s2k_A* 2ifw_A*
Probab=30.24 E-value=24 Score=16.11 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=21.5
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEE
Q ss_conf 647702996999974675784359884
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYR 108 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR 108 (110)
.|.|.+||.+.+.+.....+.|+|+..
T Consensus 80 ~~~v~~GD~i~~~Vt~~s~~~g~~ti~ 106 (206)
T 2ifr_A 80 GITISEGDSIQMSVTATSDTSGSATLE 106 (206)
T ss_dssp -CCCCTTCEEEEEEEEEETTEEEEEEE
T ss_pred CCEECCCCEEEEEEEECCCCCEEEEEE
T ss_conf 411089998999999747995799999
No 19
>1z54_A Probable thioesterase; hypothetical protein, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus HB8} SCOP: d.38.1.1
Probab=29.83 E-value=24 Score=16.16 Aligned_cols=27 Identities=15% Similarity=0.433 Sum_probs=22.0
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 770299699997467578435988429
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
-+.+||++.|+..+..+.+.+++|.+.
T Consensus 66 p~~~gd~i~v~~~v~~i~~~s~~~~~~ 92 (132)
T 1z54_A 66 PARFGEVVEVRTRLAELSSRALLFRYR 92 (132)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEEEE
T ss_pred CCCCCCEEEEEEEEEECCCEEEEEEEE
T ss_conf 469997899999999919879999999
No 20
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=28.37 E-value=18 Score=16.79 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 77029969999746757843598842
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
.+-+||.|+|-+---|..|+||-.-.
T Consensus 698 ~v~~G~~v~v~V~~iD~~r~ri~Ls~ 723 (785)
T 3bzc_A 698 VVKAGDIVKVKVMEVDIPRNRVGLSM 723 (785)
T ss_dssp HCCTTCCCCCBEEEEETTTTEEEECC
T ss_pred CCCCCCEEEEEEEEEECCCCEEEEEE
T ss_conf 48999989999999986789899884
No 21
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich structure, hydrolase; 1.40A {Aspergillus niger var} SCOP: b.29.1.20
Probab=26.80 E-value=30 Score=15.55 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=20.5
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEE
Q ss_conf 647702996999974675784359884
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYR 108 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR 108 (110)
.|.|.+||.+.+.+.....+.|+++..
T Consensus 54 ~~~v~~GD~i~~~Vt~~s~~~g~~~i~ 80 (173)
T 1y43_B 54 DITISEGDSIKVTVEATSKSSGSATVE 80 (173)
T ss_dssp TCCCCTTCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEECCCCCEEEEE
T ss_conf 641089999999999707995089999
No 22
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=26.44 E-value=36 Score=15.12 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=44.7
Q ss_pred CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r 2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH 81 (110)
Q Consensus 2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~ 81 (110)
|+..- .+.|.|..+.+.+.|- .|+.- .|-+|.-|+|-. ..++++.-
T Consensus 11 Pe~Gd-iV~g~V~~i~~~GafV-~L~ey------------------------~gieGli~isEl--------s~~~i~~~ 56 (308)
T 1q8k_A 11 PEVED-VVMVNVRSIQEMGAYV-SLLEY------------------------NNIEGMIHLSEL--------SRRRIRSI 56 (308)
T ss_dssp CSSCC-EEEEEEEEEETTEEEE-ESCTT------------------------TSCCEEECGGGT--------SCSSCSCC
T ss_pred CCCCC-EEEEEEEEEECCEEEE-EECCC------------------------CCCEEEEEHHHC--------CCCCCCCH
T ss_conf 99989-9999999997355999-97179------------------------990899898987--------87544898
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 64770299699997467578435988429
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
+=.+-+||+|.+-+--.|..+|+|..-.|
T Consensus 57 ~~~~kvGq~v~vkVl~vd~e~~~I~LSlK 85 (308)
T 1q8k_A 57 NKLIRIGRNECVKVIRVDKEKGYIDLSKR 85 (308)
T ss_dssp TTTCSSSCEEEEEEEEEETTTTEEEEECS
T ss_pred HHHCCCCCEEEEEEEEECCCCCEEEEEEC
T ss_conf 99167999999999675077727999952
No 23
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=23.76 E-value=40 Score=14.83 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=22.0
Q ss_pred CEEEEEEEEEECCCCCCEEEEECCCCC
Q ss_conf 459997899981589817999816677
Q gi|254780470|r 5 ETLEFSGIVSELLPNANFRVKLITNDD 31 (110)
Q Consensus 5 d~ie~~G~V~E~LPna~FrV~L~~~d~ 31 (110)
+..=+.|+|..+..+..|.|..++++.
T Consensus 22 ~g~~y~g~V~~~~~~~~y~V~fdDG~~ 48 (156)
T 1ssf_A 22 NGYFYSGKITRDVGAGKYKLLFDDGYE 48 (156)
T ss_dssp SSEEEEEEEEECCTTTEEEEECTTSCE
T ss_pred CCEEEEEEEEEEECCCEEEEEECCCCE
T ss_conf 992888999999079889999888992
No 24
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=23.72 E-value=40 Score=14.82 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=38.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf 99789998158981799981667765333233544333445555444555554455568828999912511201647702
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISL 87 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~ 87 (110)
.+.|.|..+.+.+-| |.|.. |-+|.-|+|-... .+.+.-.=.+-.
T Consensus 10 iv~g~V~~v~~~G~f-V~l~~--------------------------g~~Glv~~sels~--------~~~~~~~~~~~~ 54 (130)
T 2k4k_A 10 VYTGKVTGLQAYGAF-VALDE--------------------------ETQGLVHISEVTH--------GFVKDINEHLSV 54 (130)
T ss_dssp EEEEEEEEEETTEEE-EEEET--------------------------TEEEEEEGGGTSS--------SCCSCGGGTCCT
T ss_pred EEEEEEEEEECCEEE-EEECC--------------------------CCEEEEEEEEECC--------CCCCCCCCCCCC
T ss_conf 999999999788799-99899--------------------------9789988102022--------122244535689
Q ss_pred CCEEEEEECCCCCCCCEEEEEE
Q ss_conf 9969999746757843598842
Q gi|254780470|r 88 GDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 88 GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
||.|.+.+.--|..++||..-+
T Consensus 55 G~~v~v~V~~id~~~~~i~LS~ 76 (130)
T 2k4k_A 55 GDEVQVKVLAVDEEKGKISLSI 76 (130)
T ss_dssp TCEEEEEEEEEETTTTEEEEES
T ss_pred CCEEEEEEEEEECCCCEEEEEE
T ss_conf 9999999999968999899997
No 25
>1kl9_A Eukaryotic translation initiation factor 2 subunit 1; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=21.35 E-value=45 Score=14.54 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=42.2
Q ss_pred EEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECC
Q ss_conf 97899981589817999816677653332335443334455554445555544555688289999125112016477029
Q gi|254780470|r 9 FSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISLG 88 (110)
Q Consensus 9 ~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~G 88 (110)
+.|.|....+.+.| |.|+.- .|-+|.-|+|-..- ++.+.-+=.+-+|
T Consensus 19 v~g~V~~i~~~G~f-V~l~ey------------------------~gi~Glih~seis~--------~~i~~~~~~~kvG 65 (182)
T 1kl9_A 19 VMVNVRSIAEMGAY-VSLLEY------------------------NNIEGMILLSELSR--------RRIRSINKLIRIG 65 (182)
T ss_dssp EEEEEEEECSSEEE-EEETTT------------------------TTEEEEEEGGGC--------------------CTT
T ss_pred EEEEEEEEECCEEE-EEECCC------------------------CCCEEEEEHHHHCC--------CCCCCHHHCCCCC
T ss_conf 99999999666799-996577------------------------99379987899477--------7556830137899
Q ss_pred CEEEEEECCCCCCCCEEEEEEC
Q ss_conf 9699997467578435988429
Q gi|254780470|r 89 DKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 89 DkV~Ve~SPYDLtkGRItyR~K 110 (110)
|+|.+-+---|..+++|..-.|
T Consensus 66 ~~v~~kVl~vd~~~~~I~LS~K 87 (182)
T 1kl9_A 66 RNECVVVIRVDKEKGYIDLSKR 87 (182)
T ss_dssp CEEEEEEEEEETTTTEEEEEST
T ss_pred CEEEEEEEEEECCCCEEEEEEE
T ss_conf 9999999876077887999711
Done!