Query gi|254780470|ref|YP_003064883.1| translation initiation factor IF-1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs 112 out of 663
Neff 2.4
Searched_HMMs 13730
Date Wed Jun 1 04:46:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780470.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ah9a_ b.40.4.5 (A:) Translat 99.9 3.8E-28 2.7E-32 182.1 5.4 71 2-110 1-71 (71)
2 d1hr0w_ b.40.4.5 (W:) Translat 99.9 8.3E-27 6.1E-31 174.3 -0.5 70 2-109 2-71 (71)
3 d1jt8a_ b.40.4.5 (A:) Archaeal 99.2 2.4E-12 1.7E-16 90.3 3.5 71 1-110 14-85 (102)
4 d1d7qa_ b.40.4.5 (A:) Translat 98.9 2.9E-09 2.1E-13 72.4 7.7 67 5-110 29-95 (143)
5 d1u0la1 b.40.4.5 (A:3-68) Prob 96.8 0.0013 9.4E-08 39.5 6.0 61 8-108 2-62 (66)
6 d1t9ha1 b.40.4.5 (A:1-67) Prob 96.8 0.0024 1.8E-07 37.9 7.1 60 10-107 3-62 (67)
7 d2ix0a3 b.40.4.5 (A:558-644) E 94.8 0.023 1.7E-06 32.2 5.1 75 8-108 6-84 (87)
8 d1go3e1 b.40.4.5 (E:79-184) C- 70.0 3.7 0.00027 19.5 5.9 70 8-106 6-79 (106)
9 d1y14b1 b.40.4.5 (B:81-171) C- 44.3 10 0.00075 16.9 5.0 68 8-105 6-77 (91)
10 d2o14a1 b.18.1.32 (A:14-159) H 37.3 13 0.00098 16.2 4.0 71 12-86 66-140 (146)
11 d1kl9a2 b.40.4.5 (A:3-88) Euka 33.6 15 0.0011 15.9 7.2 70 8-110 16-85 (86)
12 d2ix0a2 b.40.4.5 (A:4-82) Exor 29.3 17 0.0013 15.5 2.6 23 84-107 50-74 (79)
13 g1y43.1 b.29.1.20 (A:1-32,B:3- 27.3 16 0.0011 15.8 2.1 27 82-108 84-110 (203)
14 d1lgpa_ b.26.1.2 (A:) Cell cyc 26.0 21 0.0015 15.1 3.3 63 32-110 44-109 (113)
15 d1njka_ d.38.1.1 (A:) Hypothet 24.9 19 0.0014 15.4 2.1 26 84-109 64-89 (133)
16 d2c35b1 b.40.4.5 (B:78-171) C- 24.7 22 0.0016 14.9 5.3 74 8-106 7-81 (94)
17 d1sroa_ b.40.4.5 (A:) S1 RNA-b 23.6 23 0.0017 14.8 4.6 67 8-110 8-74 (76)
18 d2uubl1 b.40.4.5 (L:5-122) Rib 20.2 16 0.0012 15.7 1.1 43 66-108 58-113 (118)
No 1
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=3.8e-28 Score=182.14 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=68.8
Q ss_pred CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r 2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH 81 (110)
Q Consensus 2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~ 81 (110)
||||.||++|+|+|+|||++|+|+| +||+.++||+|||||++
T Consensus 1 aKed~ie~~G~V~e~lg~~~f~V~l--------------------------------------~ng~~~~a~i~Gkmrk~ 42 (71)
T d1ah9a_ 1 AKEDNIEMQGTVLETLPNTMFRVEL--------------------------------------ENGHVVTAHISGKMRKN 42 (71)
T ss_dssp CCSCCEECCEEEEEECSSSEEEEEE--------------------------------------TTSCEEEEEECSSGGGT
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEE--------------------------------------CCCCEEEEECCCHHHEE
T ss_conf 9863189999999986998899996--------------------------------------79979999846434302
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 64770299699997467578435988429
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
+|+|++||+|.|||||||++||||+||||
T Consensus 43 ri~i~~GD~V~Vel~pyd~~kgrIi~R~k 71 (71)
T d1ah9a_ 43 YIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp TCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEEECC
T ss_conf 79964999999997766799388999749
No 2
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=8.3e-27 Score=174.32 Aligned_cols=70 Identities=50% Similarity=0.822 Sum_probs=65.7
Q ss_pred CCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 75645999789998158981799981667765333233544333445555444555554455568828999912511201
Q gi|254780470|r 2 PKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKH 81 (110)
Q Consensus 2 ~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~ 81 (110)
.|+|.|+++|+|+|+|||++|+|+|+ ||++++||+|||||++
T Consensus 2 kk~d~i~~~G~V~~~l~~~~f~V~l~--------------------------------------ng~~~~a~i~GkmRk~ 43 (71)
T d1hr0w_ 2 KEKDTIRTEGVVTEALPNATFRVKLD--------------------------------------SGPEILAYISGKMRMH 43 (71)
T ss_dssp CCSCCCCCEEECCCCCTTTBCCCEES--------------------------------------SSCBCCCEECHHHHHT
T ss_pred CCCCEEEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCHHHEE
T ss_conf 75327999899999889989999987--------------------------------------9999999805443212
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 6477029969999746757843598842
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
+|+|++||+|.||+||||++||||+||-
T Consensus 44 ri~i~~GD~V~Vel~pyd~~kgrIi~R~ 71 (71)
T d1hr0w_ 44 YIRILPGDRVVVEITPYDPTRGRIVYRK 71 (71)
T ss_dssp CCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred EEEECCCCEEEEEECCCCCCCEEEEECC
T ss_conf 6973599999999776679948799729
No 3
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.22 E-value=2.4e-12 Score=90.30 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=64.0
Q ss_pred CCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf 97564599978999815898179998166776533323354433344555544455555445556882899991251120
Q gi|254780470|r 1 MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRK 80 (110)
Q Consensus 1 M~Ked~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk 80 (110)
||+++--|+-|+|+++|+|++|+|.+. ||...+|++.||||+
T Consensus 14 lp~~ee~e~y~~V~k~lG~~~~~V~c~--------------------------------------dg~~rl~~irGK~Rk 55 (102)
T d1jt8a_ 14 IPRKEENEILGIIEQMLGASRVRVRCL--------------------------------------DGKTRLGRIPGRLKN 55 (102)
T ss_dssp CSCCSSCCEEEEEECSSCSSEEEEEEE--------------------------------------TTEEEEEECCHHHHH
T ss_pred CCCCCCCEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCCCCE
T ss_conf 899988889999999829988999979--------------------------------------999999998477510
Q ss_pred EEEEEECCCEEEEEECCCCC-CCCEEEEEEC
Q ss_conf 16477029969999746757-8435988429
Q gi|254780470|r 81 HRIRISLGDKVKVAMNPYDM-TRARITYRFK 110 (110)
Q Consensus 81 ~~IRIl~GDkV~Ve~SPYDL-tkGRItyR~K 110 (110)
+++|..||.|.|++++|+. +||.|+|||-
T Consensus 56 -~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~ 85 (102)
T d1jt8a_ 56 -RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85 (102)
T ss_dssp -HHCCCSCEEEEECCBCCTTSEEEEEEEESS
T ss_pred -EEEECCCCEEEEEEEECCCCCEEEEEEECC
T ss_conf -469649999999963267996799999889
No 4
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.88 E-value=2.9e-09 Score=72.42 Aligned_cols=67 Identities=19% Similarity=0.342 Sum_probs=60.1
Q ss_pred CEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 45999789998158981799981667765333233544333445555444555554455568828999912511201647
Q gi|254780470|r 5 ETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIR 84 (110)
Q Consensus 5 d~ie~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IR 84 (110)
+--|+-|+|+++|.|++|.|... +|...+|++.||||+ +++
T Consensus 29 ee~e~ya~V~k~lG~~~~~V~~~--------------------------------------dg~~rl~~irgk~r~-r~~ 69 (143)
T d1d7qa_ 29 EDGQEYAQVIKMLGNGRLEAMCF--------------------------------------DGVKRLCHIRGKLRK-KVW 69 (143)
T ss_dssp CTTEEEEEEEEECSSSEEEEEET--------------------------------------TTEEEEEECCSGGGG-SCC
T ss_pred CCCEEEEEEEEECCCCEEEEEEC--------------------------------------CCCEEEEEECCCCEE-EEE
T ss_conf 99808999999739977999978--------------------------------------999999995376514-789
Q ss_pred EECCCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 70299699997467578435988429
Q gi|254780470|r 85 ISLGDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 85 Il~GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
|.+||-|.|.+.+|+.+|+.|+|+|.
T Consensus 70 i~~Gd~VlV~~rd~e~~K~DIl~~Y~ 95 (143)
T d1d7qa_ 70 INTSDIILVGLRDYQDNKADVILKYN 95 (143)
T ss_dssp CCTTCEEEEECSSSSSSCCEEEEEEC
T ss_pred EECCCEEEEECCCCCCCEEEEEEECC
T ss_conf 81899999942578685799999789
No 5
>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=96.82 E-value=0.0013 Score=39.54 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=47.0
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf 99789998158981799981667765333233544333445555444555554455568828999912511201647702
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISL 87 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~ 87 (110)
..+|.|+.... ..|-|+.+ ++|..+.|++.|++|+-.+++++
T Consensus 2 ~~~G~Vi~~~~-~~y~V~~~-------------------------------------e~g~~~~c~~rG~lr~~~~~~~V 43 (66)
T d1u0la1 2 RRRGIVVSFHS-NMVTVEDE-------------------------------------ETGERILCKLRGKFRLQNLKIYV 43 (66)
T ss_dssp CEEEEEEEEET-TEEEEEET-------------------------------------TTCCEEEEEECGGGTTTTCCCCT
T ss_pred CEEEEEEEEEC-CEEEEEEC-------------------------------------CCCCEEEEEEECCCCCCCCCCCC
T ss_conf 70389999989-99999988-------------------------------------99959999962206026986132
Q ss_pred CCEEEEEECCCCCCCCEEEEE
Q ss_conf 996999974675784359884
Q gi|254780470|r 88 GDKVKVAMNPYDMTRARITYR 108 (110)
Q Consensus 88 GDkV~Ve~SPYDLtkGRItyR 108 (110)
||.|.++ |.|-..|.|+--
T Consensus 44 GD~V~~~--~~~~~~g~I~~I 62 (66)
T d1u0la1 44 GDRVEYT--PDETGSGVIENV 62 (66)
T ss_dssp TCEEEEE--CCCSSSEEEEEE
T ss_pred CCEEEEE--ECCCCEEEEEEE
T ss_conf 8899999--877990999898
No 6
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=96.77 E-value=0.0024 Score=37.95 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=46.3
Q ss_pred EEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCC
Q ss_conf 78999815898179998166776533323354433344555544455555445556882899991251120164770299
Q gi|254780470|r 10 SGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISLGD 89 (110)
Q Consensus 10 ~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~GD 89 (110)
+|.|+.+. +..|.|+++.. +++..+.|.+.||+|+..+++++||
T Consensus 3 ~G~Vik~~-~~~y~V~~e~~-----------------------------------~~g~~~~C~~RGk~r~~~~~p~VGD 46 (67)
T d1t9ha1 3 EGKIIKAL-SGFYYVLDESE-----------------------------------DSDKVIQCRGRGIFRKNKITPLVGD 46 (67)
T ss_dssp EEEEEEEE-TTEEEEEECSS-----------------------------------SSCEEEEEESCSSCCSCCCCCCBTC
T ss_pred CEEEEEEE-CCEEEEEECCC-----------------------------------CCCCEEEEEECEEEECCCCCCCCCC
T ss_conf 87999998-99799986456-----------------------------------8996999997500805898657076
Q ss_pred EEEEEECCCCCCCCEEEE
Q ss_conf 699997467578435988
Q gi|254780470|r 90 KVKVAMNPYDMTRARITY 107 (110)
Q Consensus 90 kV~Ve~SPYDLtkGRIty 107 (110)
.|.++.. +-..|.|+-
T Consensus 47 ~V~~~~~--~~~~g~I~~ 62 (67)
T d1t9ha1 47 YVVYQAE--NDKEGYLME 62 (67)
T ss_dssp EEEEECC--TTSCEEEEE
T ss_pred EEEEEEC--CCCEEEEEE
T ss_conf 9999983--699299999
No 7
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=94.80 E-value=0.023 Score=32.24 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=49.1
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEEC--CCE-EEEEE
Q ss_conf 9978999815898179998166776533323354433344555544455555445556882-8999912--511-20164
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNA-VVIAYTA--GRM-RKHRI 83 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~-~VlA~is--GKm-Rk~~I 83 (110)
+|+|+|+.+.+.+.| |+|++ ++-+|.-|+|.+.+- ...-.-. ... |+..-
T Consensus 6 ~F~g~Is~v~~~Gif-V~L~e-------------------------~~~eGlI~~s~L~~d~y~~d~~~~~l~~~~~~~~ 59 (87)
T d2ix0a3 6 RFAAEIVDISRGGMR-VRLVD-------------------------NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET 59 (87)
T ss_dssp CEEEEEEEEETTEEE-EEETT-------------------------TCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEE
T ss_pred EEEEEEEEEECCEEE-EEEEC-------------------------CCCEEEEEEHHCCCCEEEEECCCEEEEEEECCCE
T ss_conf 898999999857099-99935-------------------------7839999904478832999233408888872309
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEE
Q ss_conf 7702996999974675784359884
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTRARITYR 108 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtkGRItyR 108 (110)
..-+||+|+|.+.-.|..++||.++
T Consensus 60 ~~~~Gd~V~V~v~~vd~~~r~I~~~ 84 (87)
T d2ix0a3 60 VYKVTDVIDVTIAEVRMETRSIIAR 84 (87)
T ss_dssp EEETTCEEEEEEEEEETTTTEEEEE
T ss_pred EEECCCEEEEEEEEEECCCCEEEEE
T ss_conf 9988999999999982302949999
No 8
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=69.97 E-value=3.7 Score=19.48 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=40.4
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCE----EEEEE
Q ss_conf 99789998158981799981667765333233544333445555444555554455568828999912511----20164
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRM----RKHRI 83 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKm----Rk~~I 83 (110)
.++|+|+.+.+.+.| |+|. . ++ |.-++|-+... -..+...++ +...-
T Consensus 6 i~~g~V~~v~~~G~F-Vel~--~--------ie-----------------Glv~~s~l~~~-~~~~~~~~~~~~~~~~~~ 56 (106)
T d1go3e1 6 LIEGEVVDVVEFGSF-VRLG--P--------LD-----------------GLIHVSQIMDD-YVSYDPKREAIIGKETGK 56 (106)
T ss_dssp EEEEEEEEEETTEEE-EECS--S--------SE-----------------EEEEGGGSCSS-CEEECCC--CEEETTTCC
T ss_pred EEEEEEEEEEEEEEE-EEEE--C--------EE-----------------EEEEEECCCCC-EEEECCCEEEEEECCCCC
T ss_conf 999999999603899-9960--8--------69-----------------89980003676-065010115786045663
Q ss_pred EEECCCEEEEEECCCCCCCCEEE
Q ss_conf 77029969999746757843598
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTRARIT 106 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtkGRIt 106 (110)
.+-+||+|+|.+.--|+.++||-
T Consensus 57 ~~~~Gd~v~vkV~~vd~~~~~~~ 79 (106)
T d1go3e1 57 VLEIGDYVRARIVAISLKAERKR 79 (106)
T ss_dssp EECTTCEEEEEEEEEECCC----
T ss_pred CEEECCEEEEEEEEECHHHCCCC
T ss_conf 22304569999999841665455
No 9
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.31 E-value=10 Score=16.86 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=38.6
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC----EEEEEE
Q ss_conf 9978999815898179998166776533323354433344555544455555445556882899991251----120164
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGR----MRKHRI 83 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGK----mRk~~I 83 (110)
.++|+|+.+.+.+.|- ++..- +|--|++...... .|-... -+...-
T Consensus 6 v~~g~I~~v~~~G~fv-~lg~~---------------------------eg~i~~~~l~~~~--~~d~~~~~~~~~~~~~ 55 (91)
T d1y14b1 6 VVDGTVVSCSQHGFEV-QVGPM---------------------------KVFVTKHLMPQDL--TFNAGSNPPSYQSSED 55 (91)
T ss_dssp EEEEEEEEEETTEEEE-EETTE---------------------------EEEEEGGGSCTTC--EECC-----CEECSSC
T ss_pred EEEEEEEEEEEEEEEE-EECCE---------------------------EEEEEHHHCCCCE--EECCCCCEEEECCCCE
T ss_conf 9999999898168999-97584---------------------------9999954447633--7815545168613674
Q ss_pred EEECCCEEEEEECCCCCCCCEE
Q ss_conf 7702996999974675784359
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTRARI 105 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtkGRI 105 (110)
.+-+||+|+|-+.--|+.++||
T Consensus 56 ~~~~Gd~VrvkV~~v~~~~~~i 77 (91)
T d1y14b1 56 VITIKSRIRVKIEGCISQVSSI 77 (91)
T ss_dssp EECTTCEEEEEEEEEEEETTEE
T ss_pred EEECCCEEEEEEEEEECCCCCC
T ss_conf 9968999999999982434863
No 10
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=37.30 E-value=13 Score=16.21 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=36.6
Q ss_pred EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC----CEEEEEEEEE
Q ss_conf 99981589817999816677653332335443334455554445555544555688289999125----1120164770
Q gi|254780470|r 12 IVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAG----RMRKHRIRIS 86 (110)
Q Consensus 12 ~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isG----KmRk~~IRIl 86 (110)
.-.-.|||++|+|.+.-.|.- .+.+..++.... -+..| +...-+|+|...||..-+..+.+ .-+.|.|.|-
T Consensus 66 ~f~v~vPnG~Y~Vtv~~Gd~~-~~~~~~eg~~~~-~~~~g--~~~~~~~~V~VtDG~L~l~ft~~~~G~~~~in~l~I~ 140 (146)
T d2o14a1 66 TFNVDLPNGLYEVKVTLGNTA-RASVAAEGVFQV-INMTG--DGAEDTFQIPVTDGQLNLLVTEGKAGTAFTLSALKIK 140 (146)
T ss_dssp CEEEECCSEEEEEEEEESSCS-EEEEEETTEEEE-EEEES--TTCEEEEEEEECSSEEEEEEEESSTTSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEEECCC-CCCEEEEEEEEC-CCCCC--CCEEEEEEEEEECCEEEEEEECCCCCCCCEEEEEEEE
T ss_conf 699988997189999993677-762778517800-26687--3177899999879948799843778986388799998
No 11
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.62 E-value=15 Score=15.86 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=42.0
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf 99789998158981799981667765333233544333445555444555554455568828999912511201647702
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISL 87 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~ 87 (110)
.+.|.|....+++.| |.|...+ |-+|.-|+|-... .+...-.=.+-+
T Consensus 16 iv~G~V~~i~~~G~f-V~l~~~~------------------------~i~G~i~~sels~--------~~~~~~~~~~~~ 62 (86)
T d1kl9a2 16 VVMVNVRSIAEMGAY-VSLLEYN------------------------NIEGMILLSELSR--------RRIRSINKLIRI 62 (86)
T ss_dssp EEEEEEEEECSSEEE-EEETTTT------------------------TEEEEEEGGGC--------------------CT
T ss_pred EEEEEEEEEECCEEE-EEEECCC------------------------CEEEEEEEEECCC--------CCCCCCEEEEEC
T ss_conf 999999999588589-9983379------------------------9899998511054--------545562177505
Q ss_pred CCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 99699997467578435988429
Q gi|254780470|r 88 GDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 88 GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
||.|++.+---|..++||..-.|
T Consensus 63 Gd~v~~kV~~vd~~~~ki~LS~K 85 (86)
T d1kl9a2 63 GRNECVVVIRVDKEKGYIDLSKR 85 (86)
T ss_dssp TCEEEEEEEEEETTTTEEEEEST
T ss_pred CCEEEEEEEEEECCCCEEEEEEE
T ss_conf 54799999999899999998863
No 12
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=29.35 E-value=17 Score=15.53 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=15.4
Q ss_pred EEECCCEEEEEECCCCCCC--CEEEE
Q ss_conf 7702996999974675784--35988
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTR--ARITY 107 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtk--GRIty 107 (110)
..+.||+|.|.+.+.. .| |+|+.
T Consensus 50 ~A~~GD~V~v~i~~~~-~r~eg~I~~ 74 (79)
T d2ix0a2 50 KVMHGDRIIAVIHSEK-ERESAEPEE 74 (79)
T ss_dssp TCCTTCEEEEEEECC---CCEEEEEE
T ss_pred CCCCCCEEEEEEEECC-CCEEEEEEE
T ss_conf 7889999999999579-967899999
No 13
>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II {Aspergillus niger [TaxId: 5061]}
Probab=27.28 E-value=16 Score=15.84 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.3
Q ss_pred EEEEECCCEEEEEECCCCCCCCEEEEE
Q ss_conf 647702996999974675784359884
Q gi|254780470|r 82 RIRISLGDKVKVAMNPYDMTRARITYR 108 (110)
Q Consensus 82 ~IRIl~GDkV~Ve~SPYDLtkGRItyR 108 (110)
.|.|.+||.+.+.+.....++|+++..
T Consensus 84 ~~~v~~GD~i~~~V~~~s~~~g~~~i~ 110 (203)
T g1y43.1 84 DITISEGDSIKVTVEATSKSSGSATVE 110 (203)
T ss_dssp TCCCCTTCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEE
T ss_conf 652889999999999727996799999
No 14
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.97 E-value=21 Score=15.07 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEE-EEEEEECCCEEEEEECCCCCCCCEEEEE
Q ss_conf 6533323354433--344555544455555445556882899991251120-1647702996999974675784359884
Q gi|254780470|r 32 DSSADCKLDSKVK--SNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRK-HRIRISLGDKVKVAMNPYDMTRARITYR 108 (110)
Q Consensus 32 ~~~~~~~l~~~~~--~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk-~~IRIl~GDkV~Ve~SPYDLtkGRItyR 108 (110)
=|..||++.-... ..+-+.++.+| ++.||.. +.+ ...++-.||.+.+..... ..+-.|.|+
T Consensus 44 iSr~Ha~I~~~~~~~~~~~~d~S~nG-------T~vNg~~--------i~~~~~~~L~~GD~I~i~~~~~-~~~~~~~f~ 107 (113)
T d1lgpa_ 44 VSGDHCRIVVDEKSGQVTLEDTSTSG-------TVINKLK--------VVKKQTCPLQTGDVIYLVYRKN-EPEHNVAYL 107 (113)
T ss_dssp SCTTCEEEEECTTTCCEEEEECSSSC-------CCCCCCC--------CCCSSCCCCCTTCEEEEECCSS-CGGGCEEEE
T ss_pred CCHHHEEEEECCCEEEEEECCCCCEE-------EEECCEE--------CCCCCEEECCCCCEEEEEECCC-CCCCCEEEE
T ss_conf 69599299870540368730898645-------6899999--------5789468989999999966588-863147999
Q ss_pred EC
Q ss_conf 29
Q gi|254780470|r 109 FK 110 (110)
Q Consensus 109 ~K 110 (110)
|.
T Consensus 108 ~e 109 (113)
T d1lgpa_ 108 YE 109 (113)
T ss_dssp CC
T ss_pred EE
T ss_conf 98
No 15
>d1njka_ d.38.1.1 (A:) Hypothetical protein YbaW {Escherichia coli [TaxId: 562]}
Probab=24.93 E-value=19 Score=15.37 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=20.8
Q ss_pred EEECCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 77029969999746757843598842
Q gi|254780470|r 84 RISLGDKVKVAMNPYDMTRARITYRF 109 (110)
Q Consensus 84 RIl~GDkV~Ve~SPYDLtkGRItyR~ 109 (110)
-+..||.+.|++...++.+.++++++
T Consensus 64 p~~~gd~l~v~~~i~~~~~~s~~~~~ 89 (133)
T d1njka_ 64 PAVLSDLLTITSQLQQLNGKSGILSQ 89 (133)
T ss_dssp CCCTTCEEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCCCEEEEEEEEECCCCEEEEEE
T ss_conf 32323110267788744970999999
No 16
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.67 E-value=22 Score=14.93 Aligned_cols=74 Identities=9% Similarity=0.106 Sum_probs=39.2
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEE
Q ss_conf 9978999815898179998166776533323354433-344555544455555445556882899991251120164770
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVK-SNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRIS 86 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~-~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl 86 (110)
.++|+|+.+.+.+.|- .|.. +|+-+. +..++.- . ..+..+...+.. +.....+-
T Consensus 7 v~~g~V~~v~~~G~fv-~lg~----------~~~~v~~~~l~~d~-------~--y~~~~~~~~~~~-----~~~~~~~~ 61 (94)
T d2c35b1 7 VVDAVVTQVNKVGLFT-EIGP----------MSCFISRHSIPSEM-------E--FDPNSNPPCYKT-----MDEDIVIQ 61 (94)
T ss_dssp EEEEEEEEEETTEEEE-EETT----------EEEEEEGGGSCTTE-------E--EESSSSSCEEEE-----TTSCSEEE
T ss_pred EEEEEEEEEEEEEEEE-EECC----------CEEEEEHHHCCCCE-------E--ECCCCCCEEEEC-----CCCEEEEE
T ss_conf 9999999897048999-9527----------36888714668532-------6--654335328972-----66508995
Q ss_pred CCCEEEEEECCCCCCCCEEE
Q ss_conf 29969999746757843598
Q gi|254780470|r 87 LGDKVKVAMNPYDMTRARIT 106 (110)
Q Consensus 87 ~GDkV~Ve~SPYDLtkGRIt 106 (110)
+||+|++.+.--|...++|.
T Consensus 62 ~Gd~VrvkV~~v~~~~~~I~ 81 (94)
T d2c35b1 62 QDDEIRLKIVGTRVDKNDIF 81 (94)
T ss_dssp TTCEEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEEEEEECCCCCCE
T ss_conf 89989999999824757536
No 17
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Probab=23.59 E-value=23 Score=14.81 Aligned_cols=67 Identities=22% Similarity=0.411 Sum_probs=37.2
Q ss_pred EEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEC
Q ss_conf 99789998158981799981667765333233544333445555444555554455568828999912511201647702
Q gi|254780470|r 8 EFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPISYLDNAVVIAYTAGRMRKHRIRISL 87 (110)
Q Consensus 8 e~~G~V~E~LPna~FrV~L~~~d~~~~~~~~l~~~~~~~f~~~g~~~g~~g~~~~s~~~~~~VlA~isGKmRk~~IRIl~ 87 (110)
.+.|.|....+.+.| |.|.. |-+|.-|+|-..... + ...+. ..-+
T Consensus 8 iv~G~V~~v~~~G~f-V~l~~--------------------------~~~Glv~~sels~~~----~-~~~~~---~~~~ 52 (76)
T d1sroa_ 8 VYTGKVTRIVDFGAF-VAIGG--------------------------GKEGLVHISQIADKR----V-EKVTD---YLQM 52 (76)
T ss_dssp EEEEEEEEEETTEEE-EECSS--------------------------SCCCBCCTTSSCSSC----C-SCHHH---HCCT
T ss_pred EEEEEEEEEECCEEE-EEECC--------------------------CCEEEEEHHHHCCCC----C-CCHHH---CCCC
T ss_conf 999999999676799-99578--------------------------978998727727665----4-79878---1289
Q ss_pred CCEEEEEECCCCCCCCEEEEEEC
Q ss_conf 99699997467578435988429
Q gi|254780470|r 88 GDKVKVAMNPYDMTRARITYRFK 110 (110)
Q Consensus 88 GDkV~Ve~SPYDLtkGRItyR~K 110 (110)
||.|++.+---| .++||..-.|
T Consensus 53 G~~v~v~Vi~id-~~~ri~LS~k 74 (76)
T d1sroa_ 53 GQEVPVKVLEVD-RQGRIRLSIK 74 (76)
T ss_dssp TCEEEEEEEECC-TTCCCEEEEC
T ss_pred CCEEEEEEEEEC-CCCCEEEEEE
T ss_conf 999999999999-9998899987
No 18
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]}
Probab=20.16 E-value=16 Score=15.68 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCCEEEEEECCC-----------EEEEEEEEECCCEEEEEECCCCCC--CCEEEEE
Q ss_conf 882899991251-----------120164770299699997467578--4359884
Q gi|254780470|r 66 DNAVVIAYTAGR-----------MRKHRIRISLGDKVKVAMNPYDMT--RARITYR 108 (110)
Q Consensus 66 ~~~~VlA~isGK-----------mRk~~IRIl~GDkV~Ve~SPYDLt--kGRItyR 108 (110)
||..|.||+-|- +|--+.+=|||=+-+|--.-||+. ++|.+-|
T Consensus 58 ng~~v~AyIPG~GhnlqEHs~VLvrGGrv~DlPGVry~vvrG~~D~~~v~~Rk~~R 113 (118)
T d2uubl1 58 SGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSR 113 (118)
T ss_dssp TSCEEEEECCSSCCCCCTTCEEEECCCCCTTSTTCCEEBCTTSTTCCCCTTCCSST
T ss_pred CCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
T ss_conf 99099998189976745578899948866667774789972310143336653266
Done!