RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780470|ref|YP_003064883.1| translation initiation factor
IF-1 [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1
           {Escherichia coli [TaxId: 562]}
          Length = 71

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 38/106 (35%)

Query: 3   KEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPI 62
           +++T+   G+V+E LPNA FRVKL                                    
Sbjct: 3   EKDTIRTEGVVTEALPNATFRVKL------------------------------------ 26

Query: 63  SYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYR 108
                  ++AY +G+MR H IRI  GD+V V + PYD TR RI YR
Sbjct: 27  --DSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYR 70


>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1
           {Escherichia coli [TaxId: 562]}
          Length = 71

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 38/108 (35%)

Query: 3   KEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPI 62
           KE+ +E  G V E LPN  FRV+L                                    
Sbjct: 2   KEDNIEMQGTVLETLPNTMFRVELE----------------------------------- 26

Query: 63  SYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYRFK 110
              +  VV A+ +G+MRK+ IRI  GDKV V + PYD+++ RI +R +
Sbjct: 27  ---NGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71


>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 102

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 40/111 (36%)

Query: 1   MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVD 60
           +P++E  E  GI+ ++L  +  RV+ +                                 
Sbjct: 14  IPRKEENEILGIIEQMLGASRVRVRCL--------------------------------- 40

Query: 61  PISYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDM-TRARITYRFK 110
                D    +    GR++  RI +  GD V V         +  I +R+ 
Sbjct: 41  -----DGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85


>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 13/109 (11%), Positives = 31/109 (28%), Gaps = 39/109 (35%)

Query: 1   MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVD 60
           +  +E  +    V ++L N                                         
Sbjct: 25  LVFKEDGQEYAQVIKMLGNGRLEAMCF--------------------------------- 51

Query: 61  PISYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYRF 109
                D    + +  G++RK ++ I+  D + V +  Y   +A +  ++
Sbjct: 52  -----DGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKY 94


>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia
           coli [TaxId: 562]}
          Length = 87

 Score = 24.4 bits (53), Expect = 2.5
 Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 4/60 (6%)

Query: 53  ESGNDGVDPISYLDN----AVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYR 108
           ++G     P  +L       V          K      + D + V +    M    I  R
Sbjct: 25  DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 84


>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion
          and metastasis inducing protein 1) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 162

 Score = 24.0 bits (52), Expect = 3.9
 Identities = 8/28 (28%), Positives = 10/28 (35%)

Query: 37 CKLDSKVKSNFSESGSESGNDGVDPISY 64
           K  SK K     S   S  +  DP  +
Sbjct: 65 YKDGSKQKKKLVGSHRLSIYEEWDPFRF 92


>d2hyma2 b.1.2.1 (A:110-212) Interferon-alpha/beta receptor beta
           chain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 23.3 bits (50), Expect = 5.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 6   TLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESG 55
           +  F+ I+ +L+PN N+ V +     D  A  K  S +K      G ES 
Sbjct: 54  SGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIK--SPLKCTLLPPGQESE 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,127
Number of extensions: 15127
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 15
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.1 bits)