RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780470|ref|YP_003064883.1| translation initiation factor IF-1 [Candidatus Liberibacter asiaticus str. psy62] (110 letters) >d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71 Score = 80.4 bits (199), Expect = 4e-17 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 38/106 (35%) Query: 3 KEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPI 62 +++T+ G+V+E LPNA FRVKL Sbjct: 3 EKDTIRTEGVVTEALPNATFRVKL------------------------------------ 26 Query: 63 SYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYR 108 ++AY +G+MR H IRI GD+V V + PYD TR RI YR Sbjct: 27 --DSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYR 70 >d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71 Score = 78.6 bits (194), Expect = 1e-16 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 38/108 (35%) Query: 3 KEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVDPI 62 KE+ +E G V E LPN FRV+L Sbjct: 2 KEDNIEMQGTVLETLPNTMFRVELE----------------------------------- 26 Query: 63 SYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYRFK 110 + VV A+ +G+MRK+ IRI GDKV V + PYD+++ RI +R + Sbjct: 27 ---NGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71 >d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 102 Score = 57.4 bits (139), Expect = 3e-10 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 40/111 (36%) Query: 1 MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVD 60 +P++E E GI+ ++L + RV+ + Sbjct: 14 IPRKEENEILGIIEQMLGASRVRVRCL--------------------------------- 40 Query: 61 PISYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDM-TRARITYRFK 110 D + GR++ RI + GD V V + I +R+ Sbjct: 41 -----DGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85 >d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Score = 48.7 bits (116), Expect = 1e-07 Identities = 13/109 (11%), Positives = 31/109 (28%), Gaps = 39/109 (35%) Query: 1 MPKEETLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGNDGVD 60 + +E + V ++L N Sbjct: 25 LVFKEDGQEYAQVIKMLGNGRLEAMCF--------------------------------- 51 Query: 61 PISYLDNAVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYRF 109 D + + G++RK ++ I+ D + V + Y +A + ++ Sbjct: 52 -----DGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKY 94 >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 87 Score = 24.4 bits (53), Expect = 2.5 Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 4/60 (6%) Query: 53 ESGNDGVDPISYLDN----AVVIAYTAGRMRKHRIRISLGDKVKVAMNPYDMTRARITYR 108 ++G P +L V K + D + V + M I R Sbjct: 25 DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIAR 84 >d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 162 Score = 24.0 bits (52), Expect = 3.9 Identities = 8/28 (28%), Positives = 10/28 (35%) Query: 37 CKLDSKVKSNFSESGSESGNDGVDPISY 64 K SK K S S + DP + Sbjct: 65 YKDGSKQKKKLVGSHRLSIYEEWDPFRF 92 >d2hyma2 b.1.2.1 (A:110-212) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Score = 23.3 bits (50), Expect = 5.8 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 6 TLEFSGIVSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESG 55 + F+ I+ +L+PN N+ V + D A K S +K G ES Sbjct: 54 SGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIK--SPLKCTLLPPGQESE 101 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.315 0.132 0.365 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 385,127 Number of extensions: 15127 Number of successful extensions: 48 Number of sequences better than 10.0: 1 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 15 Length of query: 110 Length of database: 2,407,596 Length adjustment: 69 Effective length of query: 41 Effective length of database: 1,460,226 Effective search space: 59869266 Effective search space used: 59869266 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 47 (22.1 bits)