HHsearch alignment for GI: 254780471 and conserved domain: COG3125
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion].
Probab=100.00 E-value=8.7e-43 Score=255.37 Aligned_cols=111 Identities=47% Similarity=0.780 Sum_probs=103.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 98788889877788852568999999999999999999806578846999999999999999999999704778765025
Q gi|254780471|r 1 MKYDNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS 80 (119)
Q Consensus 1 m~~~~~h~~~~~~hgs~k~yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n 80 (119)
T Consensus 1 Mss~~~~~~~~a~H~s~k~y~iGFvLsIiLT~ipF~~vm~~~~-~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~ 79 (111)
T COG3125 1 MSSALHTNHGGASHGSLKSYLIGFVLSIILTLIPFWVVMTGAL-SSTVTLIIILGLAVIQILVHLVYFLHMNTKSEGRWN 79 (111)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 9976668876454335899999999999999999999983464-434699999999999999999987304688666641
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 99999999999999999999998511304895
Q gi|254780471|r 81 IMAMIFTIIMVAICFVGSMWVMYHLNNNMMSM 112 (119)
Q Consensus 81 ~~a~~Ft~~ii~iiv~GSiWIM~~l~~nMMp~ 112 (119)
T Consensus 80 ~~~~iFt~~i~vivvvGS~Wvm~~~n~~mm~~ 111 (111)
T COG3125 80 MGALIFTIFIIVIVVVGSIWVMHNLNHNMMPL 111 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 19999999999999999999998163035899