HHsearch alignment for GI: 254780471 and conserved domain: COG3125

>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion].
Probab=100.00  E-value=8.7e-43  Score=255.37  Aligned_cols=111  Identities=47%  Similarity=0.780  Sum_probs=103.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             98788889877788852568999999999999999999806578846999999999999999999999704778765025
Q gi|254780471|r    1 MKYDNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS   80 (119)
Q Consensus         1 m~~~~~h~~~~~~hgs~k~yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n   80 (119)
T Consensus         1 Mss~~~~~~~~a~H~s~k~y~iGFvLsIiLT~ipF~~vm~~~~-~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~   79 (111)
T COG3125           1 MSSALHTNHGGASHGSLKSYLIGFVLSIILTLIPFWVVMTGAL-SSTVTLIIILGLAVIQILVHLVYFLHMNTKSEGRWN   79 (111)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             9976668876454335899999999999999999999983464-434699999999999999999987304688666641


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             99999999999999999999998511304895
Q gi|254780471|r   81 IMAMIFTIIMVAICFVGSMWVMYHLNNNMMSM  112 (119)
Q Consensus        81 ~~a~~Ft~~ii~iiv~GSiWIM~~l~~nMMp~  112 (119)
T Consensus        80 ~~~~iFt~~i~vivvvGS~Wvm~~~n~~mm~~  111 (111)
T COG3125          80 MGALIFTIFIIVIVVVGSIWVMHNLNHNMMPL  111 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             19999999999999999999998163035899