HHsearch alignment for GI: 254780471 and conserved domain: TIGR02229
>TIGR02229 caa3_sub_IV caa(3)-type oxidase, subunit IV; InterPro: IPR011743 This entry represents a small set of proteins with weak similarity to the sequences in Pfam family IPR005171 from INTERPRO, which describes the cytochrome C oxidase subunit IV ..
Probab=91.43 E-value=0.92 Score=23.15 Aligned_cols=79 Identities=13% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCC-HHHHHHHHHHHH---HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 885-256899999999---9999999999806-57884699999999999999999999970477876502599999999
Q gi|254780471|r 14 YGT-KKQCLVGFILSL---ILTIIPFGIVMKG-FFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTI 88 (119)
Q Consensus 14 hgs-~k~yliGFiLsi---iLT~iaF~lV~~~-~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~ 88 (119)
T Consensus 3 Hi~~~~~~~~v~~~L~vL~~lTv~A~~~~~~LihiPG-~La~~val~IA~~KA~Lv~lyFMHl~~~~~l~rl~~a~af~~ 81 (96)
T TIGR02229 3 HISDLATYLKVWLALLVLTALTVAASFFELELIHIPG-ALAVVVALAIAVVKAVLVVLYFMHLKRESKLLRLVVAVAFAI 81 (96)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHH
T ss_conf 8777347999999999999999999998433302587-689999999999999884453100110035899999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780471|r 89 IMVAI 93 (119)
Q Consensus 89 ~ii~i 93 (119)
T Consensus 82 Lailf 86 (96)
T TIGR02229 82 LAILF 86 (96)
T ss_pred HHHHH
T ss_conf 99999