HHsearch alignment for GI: 254780471 and conserved domain: pfam03626

>pfam03626 COX4_pro Prokaryotic Cytochrome C oxidase subunit IV. Cytochrome c oxidase (COX) is a multi-subunit enzyme complex that catalyses the final step of electron transfer through the respiratory chain on the mitochondrial inner membrane. This family is composed of cytochrome c oxidase subunit 4 from prokaryotes.
Probab=99.97  E-value=1.6e-31  Score=193.14  Aligned_cols=83  Identities=47%  Similarity=0.912  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999998065788469999999999999999999997047787650259999999999999999999
Q gi|254780471|r   20 CLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSM   99 (119)
Q Consensus        20 yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~iiv~GSi   99 (119)
T Consensus         1 y~iGFilsiiLT~i~F~~V~~~~~-~~~~~~~~i~~~A~vQi~vqL~~FLHm~~~~~~~wn~~~~~f~~~i~~i~v~Gsl   79 (83)
T pfam03626         1 YLIGFVLSVILTLIPFWLVMAGVL-SKSTTLAIILVLAVVQIVVQLVYFLHMNTSSEGRWNLLALIFTILIAVIVVAGSL   79 (83)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHEE
T ss_conf             944999999999999999996658-8508999999999999999999851247887763179999999999999877222


Q ss_pred             HHHH
Q ss_conf             9998
Q gi|254780471|r  100 WVMY  103 (119)
Q Consensus       100 WIM~  103 (119)
T Consensus        80 WIm~   83 (83)
T pfam03626        80 WIMH   83 (83)
T ss_pred             EEEC
T ss_conf             5659