HHsearch alignment for GI: 254780471 and conserved domain: pfam03626
>pfam03626 COX4_pro Prokaryotic Cytochrome C oxidase subunit IV. Cytochrome c oxidase (COX) is a multi-subunit enzyme complex that catalyses the final step of electron transfer through the respiratory chain on the mitochondrial inner membrane. This family is composed of cytochrome c oxidase subunit 4 from prokaryotes.
Probab=99.97 E-value=1.6e-31 Score=193.14 Aligned_cols=83 Identities=47% Similarity=0.912 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999998065788469999999999999999999997047787650259999999999999999999
Q gi|254780471|r 20 CLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSM 99 (119)
Q Consensus 20 yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~iiv~GSi 99 (119)
T Consensus 1 y~iGFilsiiLT~i~F~~V~~~~~-~~~~~~~~i~~~A~vQi~vqL~~FLHm~~~~~~~wn~~~~~f~~~i~~i~v~Gsl 79 (83)
T pfam03626 1 YLIGFVLSVILTLIPFWLVMAGVL-SKSTTLAIILVLAVVQIVVQLVYFLHMNTSSEGRWNLLALIFTILIAVIVVAGSL 79 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHEE
T ss_conf 944999999999999999996658-8508999999999999999999851247887763179999999999999877222
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780471|r 100 WVMY 103 (119)
Q Consensus 100 WIM~ 103 (119)
T Consensus 80 WIm~ 83 (83)
T pfam03626 80 WIMH 83 (83)
T ss_pred EEEC
T ss_conf 5659