Query gi|254780471|ref|YP_003064884.1| cytochrome o ubiquinol oxidase subunit IV [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 101 out of 264
Neff 4.7
Searched_HMMs 33803
Date Wed Jun 1 13:11:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780471.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3dl8_G Preprotein translocase 54.0 13 0.00039 16.4 5.7 53 51-103 118-171 (181)
2 >2zjs_Y Preprotein translocase 43.9 19 0.00057 15.5 5.6 85 20-104 69-160 (184)
3 >1lgh_A LH II, B800/850, light 27.5 36 0.0011 14.0 3.8 30 35-68 9-38 (56)
4 >3din_C Preprotein translocase 25.0 41 0.0012 13.7 5.1 53 51-104 122-174 (183)
5 >3f4m_A Tumor necrosis factor, 17.0 61 0.0018 12.7 2.7 55 25-84 71-126 (161)
6 >2dgk_A GAD-beta, GADB, glutam 16.0 65 0.0019 12.6 1.7 13 59-71 75-87 (87)
7 >3cx5_C Cytochrome B-C1 comple 13.0 79 0.0023 12.1 4.4 52 50-108 9-60 (130)
8 >2qjy_A Cytochrome B; cytochro 11.4 89 0.0026 11.8 4.4 27 51-77 9-35 (171)
9 >1pp9_C Cytochrome B; cytochro 11.3 89 0.0026 11.8 4.9 52 50-108 34-85 (158)
10 >1qle_C Cytochrome C oxidase p 10.7 94 0.0028 11.7 3.5 49 52-100 18-66 (77)
No 1
>>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:1-181)
Probab=53.98 E-value=13 Score=16.41 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999997047787650-2599999999999999999999998
Q gi|254780471|r 51 LTIVLCAIAQIIVHLVFFLHMSTKVEDG-WSIMAMIFTIIMVAICFVGSMWVMY 103 (119)
Q Consensus 51 ~~I~~~Av~Qi~VqL~~FLHl~~~~~~~-~n~~a~~Ft~~ii~iiv~GSiWIM~ 103 (119)
.+-+++|++|.++....+-.-+...... .....+.+...++..++.||.-+|+
T Consensus 118 ~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGs~~~iw 171 (181)
T 3dl8_G 118 YLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVW 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999996203576654023175099999999999999999999
No 2
>>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:12-195)
Probab=43.90 E-value=19 Score=15.50 Aligned_cols=85 Identities=12% Similarity=-0.033 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHCCCCC-CH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHH
Q ss_conf 89999999999999-99999806578-84----69999999999999999999997047787650-25999999999999
Q gi|254780471|r 20 CLVGFILSLILTII-PFGIVMKGFFL-DK----NIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDG-WSIMAMIFTIIMVA 92 (119)
Q Consensus 20 yliGFiLsiiLT~i-aF~lV~~~~~~-~~----~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~-~n~~a~~Ft~~ii~ 92 (119)
|++.=+..=+|+.+ |-..-+.+..+ +| ..+-.+-+++|++|.++....+-..+..+... .......+.+.+++
T Consensus 69 ~ItasIi~QlL~~~~p~l~~~~~~~~~gr~k~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T 2zjs_Y 69 YITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVV 148 (184)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999857310765321324469999999999999999999999999985057764014656804789999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999985
Q gi|254780471|r 93 ICFVGSMWVMYH 104 (119)
Q Consensus 93 iiv~GSiWIM~~ 104 (119)
.+++||.-+|+=
T Consensus 149 ~l~~G~~i~~wl 160 (184)
T 2zjs_Y 149 TQVAGIALLLWM 160 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 3
>>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} (A:)
Probab=27.47 E-value=36 Score=13.97 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999806578846999999999999999999999
Q gi|254780471|r 35 FGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFF 68 (119)
Q Consensus 35 F~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~F 68 (119)
||+|.. |.+.++++.+..+++-+.||.+-|
T Consensus 9 iWLVvN----PsTWL~pi~iav~~~ai~VH~~vl 38 (56)
T 1lgh_A 9 IWLVIN----PSTWLPVIWIVATVVAIAVHAAVL 38 (56)
T ss_dssp HHHHSC----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999977----415489999999999999999987
No 4
>>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:1-183)
Probab=25.00 E-value=41 Score=13.71 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999704778765025999999999999999999999985
Q gi|254780471|r 51 LTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYH 104 (119)
Q Consensus 51 ~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~iiv~GSiWIM~~ 104 (119)
.+-++.|++|.++....+-..+....- .......+...++++++.||.-+|+=
T Consensus 122 ~ltl~~a~iQa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lv~Gs~il~wL 174 (183)
T 3din_C 122 RLTLLIGGFQAFFVSFSLARSNPDMVA-PGVNVLQFTVLSTMSMLAGTMFLLWL 174 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCCC-CCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998606987446-65741689999999999999999999
No 5
>>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens} (A:)
Probab=16.98 E-value=61 Score=12.74 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHH
Q ss_conf 99999999999999806578846999999999999999999999704778765025-9999
Q gi|254780471|r 25 ILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS-IMAM 84 (119)
Q Consensus 25 iLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n-~~a~ 84 (119)
.-.+.+|+++|+=|-+. + +++.+...+--| +-.+|=.-==|++.+|.+|.| ++.+
T Consensus 71 ~~~~amt~iSFyevdfT-f-D~~~L~~~L~ec---r~~L~~lV~~HLT~KS~gRI~~VF~~ 126 (161)
T 3f4m_A 71 LRQGAMTALSFGEVDFT-F-EAAVLAGLLTEC---RDVLLELVEHHLTPKSHGRIRHVFDH 126 (161)
T ss_dssp HHHHHHHHHHHTSTTSC-C-CHHHHHHHHHHH---HHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEE-E-CHHHHHHHHHHH---HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99988998523012134-3-599999999999---99999999976876357689999850
No 6
>>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* (A:52-99,A:282-320)
Probab=15.99 E-value=65 Score=12.59 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999704
Q gi|254780471|r 59 AQIIVHLVFFLHM 71 (119)
Q Consensus 59 ~Qi~VqL~~FLHl 71 (119)
.||+.|-+-|+++
T Consensus 75 ~~vi~QYynflrL 87 (87)
T 2dgk_A 75 GQVIAQYYEFLRL 87 (87)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 0133445667761
No 7
>>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} (C:25-107,C:214-260)
Probab=13.02 E-value=79 Score=12.13 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999997047787650259999999999999999999999851130
Q gi|254780471|r 50 CLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNN 108 (119)
Q Consensus 50 ~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~iiv~GSiWIM~~l~~n 108 (119)
--++.+|-++|++--|+.=||-+...+-. |+-+.-..-=+--=|.+.|+|+|
T Consensus 9 GSLLGlCLi~QI~TGlFLAMHYtad~~~A-------FsSVaHIcRDVnyGWliRnlHAN 60 (130)
T 3cx5_C 9 GSLLGLCLVIQIVTGIFMAMHYSSNIELA-------FSSVEHIMRDVHNGYILRYLHAN 60 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTH-------HHHHHHHHHTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999999999977990679-------99999998137468999999998
No 8
>>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* (A:41-122,A:227-284,A:415-445)
Probab=11.35 E-value=89 Score=11.83 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999999999999704778765
Q gi|254780471|r 51 LTIVLCAIAQIIVHLVFFLHMSTKVED 77 (119)
Q Consensus 51 ~~I~~~Av~Qi~VqL~~FLHl~~~~~~ 77 (119)
-++.+|-++||+--|+.=||-+...+.
T Consensus 9 SLLglCLi~QIlTGLFLAMHYT~d~~~ 35 (171)
T 2qjy_A 9 VVLAFCLVLQIVTGIVLAMHYTPHVDL 35 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 999999999999999999998699447
No 9
>>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} (C:1-107,C:209-259)
Probab=11.29 E-value=89 Score=11.82 Aligned_cols=52 Identities=19% Similarity=0.352 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999997047787650259999999999999999999999851130
Q gi|254780471|r 50 CLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNN 108 (119)
Q Consensus 50 ~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~iiv~GSiWIM~~l~~n 108 (119)
--++.+|-++|++--|+.=||-....+-. |+-+.-..-=+--=|.+.++|+|
T Consensus 34 GSLLglCLiiQi~TGlFLAMHYtad~~~A-------FsSV~HIcRDVnyGWliRn~HAN 85 (158)
T 1pp9_C 34 GSLLGICLILQILTGLFLAMHYTSDTTTA-------FSSVTHICRDVNYGWIIRYMHAN 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCTTTH-------HHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999999999998856991689-------99999998447457999898887
No 10
>>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (C:1-77)
Probab=10.67 E-value=94 Score=11.69 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999970477876502599999999999999999999
Q gi|254780471|r 52 TIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMW 100 (119)
Q Consensus 52 ~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~iiv~GSiW 100 (119)
++..++..-..+=++.++|-........+-..+.+..++..+.+.-.||
T Consensus 18 i~~S~~~~~~~~g~v~~~h~~~~~~~~~~~~~~~~~gl~~l~~~~~~Ww 66 (77)
T 1qle_C 18 FFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVGVLYVMFGWW 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCSSSCCCSSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998463122354419999999999999999999
Done!