Query gi|254780471|ref|YP_003064884.1| cytochrome o ubiquinol oxidase subunit IV [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 101 out of 264
Neff 4.7
Searched_HMMs 13730
Date Wed Jun 1 05:23:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780471.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54j_ f.23.4.1 (J:) Mitochon 10.9 38 0.0027 11.7 3.1 21 92-112 37-57 (58)
2 d1nm8a2 c.43.1.3 (A:386-599) C 7.7 51 0.0037 11.0 2.1 12 57-68 25-36 (214)
3 d1t1ua2 c.43.1.3 (A:402-616) C 6.9 56 0.0041 10.8 2.1 12 57-68 24-35 (215)
4 d1xl7a2 c.43.1.3 (A:393-610) P 6.8 57 0.0041 10.7 2.1 11 58-68 27-37 (218)
5 d1oedb_ f.36.1.1 (B:) Acetylch 5.6 66 0.0048 10.4 4.9 23 85-108 69-91 (250)
6 d1v54m_ f.23.7.1 (M:) Mitochon 5.5 67 0.0049 10.3 2.8 17 91-107 23-39 (43)
7 d1lbua2 d.65.1.1 (A:84-213) Zn 4.2 54 0.004 10.8 -1.1 13 68-80 112-124 (130)
8 d1prtf_ b.40.2.1 (F:) Pertussi 4.2 88 0.0064 9.7 1.9 20 9-28 43-62 (98)
9 d1rh5b_ f.23.28.1 (B:) Preprot 4.0 94 0.0069 9.5 2.4 17 62-78 5-21 (56)
10 d1pfsa_ b.40.4.7 (A:) Gene V p 3.7 86 0.0063 9.7 -0.4 10 68-77 28-37 (78)
No 1
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.87 E-value=38 Score=11.73 Aligned_cols=21 Identities=19% Similarity=0.583 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999999999998511304895
Q gi|254780471|r 92 AICFVGSMWVMYHLNNNMMSM 112 (119)
Q Consensus 92 ~iiv~GSiWIM~~l~~nMMp~ 112 (119)
+..++|+.|..+.+..-.+|.
T Consensus 37 ~L~~~G~~~s~~~l~~a~~Pk 57 (58)
T d1v54j_ 37 TLCLGGTLYSLYCLGWASFPH 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 999998999999999985789
No 2
>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.74 E-value=51 Score=11.02 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780471|r 57 AIAQIIVHLVFF 68 (119)
Q Consensus 57 Av~Qi~VqL~~F 68 (119)
|++|+..||-|+
T Consensus 25 a~iQlalQLA~~ 36 (214)
T d1nm8a2 25 AFIQMALQLAYY 36 (214)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 3
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.85 E-value=56 Score=10.77 Aligned_cols=12 Identities=17% Similarity=0.639 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780471|r 57 AIAQIIVHLVFF 68 (119)
Q Consensus 57 Av~Qi~VqL~~F 68 (119)
|++|+.+||-|+
T Consensus 24 a~iQlAlQLA~~ 35 (215)
T d1t1ua2 24 GFIQVALQLAYY 35 (215)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 4
>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.77 E-value=57 Score=10.75 Aligned_cols=11 Identities=18% Similarity=0.673 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780471|r 58 IAQIIVHLVFF 68 (119)
Q Consensus 58 v~Qi~VqL~~F 68 (119)
++|+..||-|+
T Consensus 27 ~vQlalQLA~~ 37 (218)
T d1xl7a2 27 FIQLALQLAYY 37 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 5
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.59 E-value=66 Score=10.37 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999851130
Q gi|254780471|r 85 IFTIIMVAICFVGSMWVMYHLNNN 108 (119)
Q Consensus 85 ~Ft~~ii~iiv~GSiWIM~~l~~n 108 (119)
.++.+++.+-+..+++|.+ +|++
T Consensus 69 ~~~~~~~~~~~~~~~~v~~-~~~~ 91 (250)
T d1oedb_ 69 MFIMILVAFSVILSVVVLN-LHHR 91 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHHHHHEE-EECC
T ss_conf 9998999999998875201-4505
No 6
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.50 E-value=67 Score=10.33 Aligned_cols=17 Identities=35% Similarity=0.790 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999985113
Q gi|254780471|r 91 VAICFVGSMWVMYHLNN 107 (119)
Q Consensus 91 i~iiv~GSiWIM~~l~~ 107 (119)
.+.+.+-+=||+.||..
T Consensus 23 f~~~L~PaGwVLshLe~ 39 (43)
T d1v54m_ 23 FLSFLLPAGWVLYHLDN 39 (43)
T ss_dssp HHHHHHHHHHHHHTHHH
T ss_pred HHHHHCCHHHHHHHHHH
T ss_conf 99997008999999998
No 7
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]}
Probab=4.20 E-value=54 Score=10.85 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=6.3
Q ss_pred HHHCCCCCCCHHH
Q ss_conf 9704778765025
Q gi|254780471|r 68 FLHMSTKVEDGWS 80 (119)
Q Consensus 68 FLHl~~~~~~~~n 80 (119)
|.|+|.++...|+
T Consensus 112 fvHvD~~~~r~Ws 124 (130)
T d1lbua2 112 HTHVAGGDGRFWS 124 (130)
T ss_dssp SEEEECSSSCEEE
T ss_pred EEEECCCCCCCCC
T ss_conf 7887899997458
No 8
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=4.19 E-value=88 Score=9.69 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=14.9
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q ss_conf 87778885256899999999
Q gi|254780471|r 9 MNMHSYGTKKQCLVGFILSL 28 (119)
Q Consensus 9 ~~~~~hgs~k~yliGFiLsi 28 (119)
..++.||+.-.-..||..|-
T Consensus 43 da~~~~~twfdtmlgfaisa 62 (98)
T d1prtf_ 43 DAGHEHDTWFDTMLGFAISA 62 (98)
T ss_dssp CCSCTTCHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHH
T ss_conf 31433460999899899999
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.95 E-value=94 Score=9.52 Aligned_cols=17 Identities=12% Similarity=-0.099 Sum_probs=8.0
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 99999997047787650
Q gi|254780471|r 62 IVHLVFFLHMSTKVEDG 78 (119)
Q Consensus 62 ~VqL~~FLHl~~~~~~~ 78 (119)
+-+-+-++.+.++++..
T Consensus 5 ~~es~Rvlk~~~KP~~~ 21 (56)
T d1rh5b_ 5 IEECRRVWLVLKKPTKD 21 (56)
T ss_dssp HHHHHHHHHSEECCCHH
T ss_pred HHHHHHHHHHHCCCCHH
T ss_conf 99999999996599889
No 10
>d1pfsa_ b.40.4.7 (A:) Gene V protein {Pseudomonas phage Pf3 [TaxId: 10872]}
Probab=3.72 E-value=86 Score=9.73 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=5.0
Q ss_pred HHHCCCCCCC
Q ss_conf 9704778765
Q gi|254780471|r 68 FLHMSTKVED 77 (119)
Q Consensus 68 FLHl~~~~~~ 77 (119)
|||+..++++
T Consensus 28 flhledkphp 37 (78)
T d1pfsa_ 28 FLHLEDKPHP 37 (78)
T ss_dssp EECCTTCSSC
T ss_pred EEECCCCCCC
T ss_conf 1461579985
Done!