BLAST/PSIBLAST alignment of GI: 254780471 and GI: 33593692 at iteration 1
>gi|33593692|ref|NP_881336.1| cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis Tohama I] Length = 135
>gi|33595767|ref|NP_883410.1| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis 12822] Length = 135
>gi|33600293|ref|NP_887853.1| cytochrome ubiquinol oxidase subunit IV [Bordetella bronchiseptica RB50] Length = 135
>gi|33563765|emb|CAE43005.1| cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis Tohama I] Length = 135
>gi|33565846|emb|CAE36392.1| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis] Length = 135
>gi|33567892|emb|CAE31805.1| cytochrome ubiquinol oxidase subunit IV [Bordetella bronchiseptica RB50] Length = 135
>gi|332383096|gb|AEE67943.1| cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis CS] Length = 135
 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)

Query: 7   HNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLV 66
           H  +   +GT    L GF+L+ ILT IPF +VM G F       L I+  A+ QI+VHLV
Sbjct: 21  HEDDDGPHGTLASYLTGFVLAAILTAIPFWLVMDGVFASSRTTALVILAFAVVQIVVHLV 80

Query: 67  FFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSME 113
           +FLHM  K E GW+++A+IFT+++V I   GS+W+MYHLN+NMM M 
Sbjct: 81  YFLHMDAKSESGWNMLALIFTLVLVVITLSGSIWIMYHLNSNMMPMS 127