RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780471|ref|YP_003064884.1| cytochrome o ubiquinol oxidase
subunit IV [Candidatus Liberibacter asiaticus str. psy62]
(119 letters)
>gnl|CDD|146325 pfam03626, COX4_pro, Prokaryotic Cytochrome C oxidase subunit IV.
Cytochrome c oxidase (COX) is a multi-subunit enzyme
complex that catalyses the final step of electron
transfer through the respiratory chain on the
mitochondrial inner membrane. This family is composed of
cytochrome c oxidase subunit 4 from prokaryotes.
Length = 83
Score = 86.4 bits (215), Expect = 2e-18
Identities = 39/83 (46%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 21 LVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS 80
L+GF+LS+ILT+IPF +VM G K+ I++ A+ QI+V LV+FLHM+T E W+
Sbjct: 2 LIGFVLSVILTLIPFWLVMAGVL-SKSTTLAIILVLAVVQIVVQLVYFLHMNTSSEGRWN 60
Query: 81 IMAMIFTIIMVAICFVGSMWVMY 103
++A+IFTI++ I GS+W+M+
Sbjct: 61 LLALIFTILIAVIVVAGSLWIMH 83
>gnl|CDD|32939 COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit
4 [Energy production and conversion].
Length = 111
Score = 82.6 bits (204), Expect = 2e-17
Identities = 52/112 (46%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Query: 1 MKYDNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQ 60
M N S+G+ K L+GF+LS+ILT+IPF +VM G + + I+ A+ Q
Sbjct: 1 MSSALHTNHGGASHGSLKSYLIGFVLSIILTLIPFWVVMTGAL-SSTVTLIIILGLAVIQ 59
Query: 61 IIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSM 112
I+VHLV+FLHM+TK E W++ A+IFTI ++ I VGS+WVM++LN+NMM +
Sbjct: 60 ILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWVMHNLNHNMMPL 111
>gnl|CDD|39985 KOG4788, KOG4788, KOG4788, Members of chemokine-like factor super
family and related proteins [Defense mechanisms].
Length = 172
Score = 29.6 bits (66), Expect = 0.23
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 25 ILSLILTIIPFGIVMKGFFLDKNIMCLTIV----LCAIAQIIVHLVFFLHMSTKVEDGWS 80
IL ++L +I F + + V ++ + LH + + W
Sbjct: 43 ILEIVLGLIIFICIASSLAYHLALAFFEFVSVFAFLLTLAFLILYLTLLHETIVLPIRWP 102
Query: 81 IMAMIFTIIMVAICFVGSMWVMYHLNNNMMSMEG 114
+ + +++ + F + WV+ +
Sbjct: 103 FLLDLLNLVVALLLFAIASWVLAQFSATTGGGGA 136
>gnl|CDD|37144 KOG1933, KOG1933, KOG1933, Cholesterol transport protein
(Niemann-Pick C disease protein) [Lipid transport and
metabolism].
Length = 1201
Score = 27.6 bits (61), Expect = 0.92
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 43 FLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWV 101
F ++ + T L + IV +F + D S + M+ M+ + VG M++
Sbjct: 1010 FYEQYLTIWTDTLTNLGIDIV-AIFLVTSVLLGLDVDSSLIMVLVDEMILVNLVGFMYL 1067
>gnl|CDD|39153 KOG3950, KOG3950, KOG3950, Gamma/delta sarcoglycan
[Cytoskeleton].
Length = 292
Score = 26.8 bits (59), Expect = 1.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 14 YGTKKQCLVGFILSLILTII 33
YG +K+CL F+L L++ I+
Sbjct: 30 YGWRKRCLYTFVLLLMILIV 49
>gnl|CDD|34399 COG4789, EscV, Type III secretory pathway, component EscV
[Intracellular trafficking and secretion].
Length = 689
Score = 26.0 bits (57), Expect = 2.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 22 VGFILSLILTIIPFGIVMKG 41
VGF++ LI+TI+ F ++ KG
Sbjct: 113 VGFVIFLIITIVQFIVITKG 132
>gnl|CDD|144389 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 25.1 bits (56), Expect = 5.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 10/34 (29%)
Query: 22 VGFILSLILTIIPFGIVMKG----------FFLD 45
VG ++ LIL I+ F ++ KG F LD
Sbjct: 93 VGLVVFLILVIVNFIVITKGAERVAEVAARFTLD 126
>gnl|CDD|30739 COG0390, COG0390, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 256
Score = 24.8 bits (54), Expect = 5.1
Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 21 LVGFILSLILTIIPFGIVMK-GFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGW 79
+ L+ +L ++ I K G L+K+I+ +I + +I+ F L +++
Sbjct: 8 NLSLGLAYLLVVVAILISHKEGLGLEKDILVASI-RTVVQLLILG--FVLSYIFALDNPA 64
Query: 80 SIMAMIFTIIMVAI 93
+ M+ ++ +A
Sbjct: 65 LTLLMVLVMLTIAA 78
>gnl|CDD|36587 KOG1373, KOG1373, KOG1373, Transport protein Sec61, alpha subunit
[Intracellular trafficking, secretion, and vesicular
transport, Posttranslational modification, protein
turnover, chaperones].
Length = 476
Score = 24.8 bits (54), Expect = 5.2
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 19 QCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDG 78
Q L I+++ ++ VM G + + + + I L I Q+ + + + ++ G
Sbjct: 118 QKLFAIIITVGQAVV---YVMTGMYGSPSDLGVGICLLIILQLFFAGIIVILLDELLQKG 174
Query: 79 WSIMAMIFTIIMVAIC 94
+ + + I I IC
Sbjct: 175 YGLGSGISLFIATNIC 190
>gnl|CDD|144772 pfam01295, Adenylate_cycl, Adenylate cyclase, class-I.
Length = 830
Score = 24.9 bits (55), Expect = 5.4
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 5 NIHNMNMHSYGTKKQCLVGFILSLI 29
+I N ++ S+G +++CLVG I LI
Sbjct: 580 DIQNSDLFSFGREQECLVGSI-DLI 603
>gnl|CDD|35430 KOG0209, KOG0209, KOG0209, P-type ATPase [Inorganic ion transport and
metabolism].
Length = 1160
Score = 24.9 bits (54), Expect = 5.5
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 47 NIMCLTIVLCAIAQIIVHLVFFLHMSTKVE 76
NI + I+L + Q VH+ ++++ +
Sbjct: 1003 NIFNVYIILSVLLQFAVHIATLVYITGEAY 1032
>gnl|CDD|35474 KOG0253, KOG0253, KOG0253, Synaptic vesicle transporter SV2 (major
facilitator superfamily) [General function prediction
only].
Length = 528
Score = 25.0 bits (54), Expect = 5.7
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 27 SLILTIIPF-GIVMKGFFLD----KNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSI 81
LI ++ F G+++ G ++ K M L+++L I + +
Sbjct: 387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFG----IFLFLLTTCKTRNAYTVLLF 442
Query: 82 MAMIFTIIMVAICFV 96
A F + +V
Sbjct: 443 TARAFISGAFQVAYV 457
>gnl|CDD|145006 pfam01635, Corona_M, Coronavirus M matrix/glycoprotein. This
family consists of various coronavirus matrix proteins
which are transmembrane glycoproteins. The M protein or
E1 glycoprotein is The coronavirus M protein is
implicated in virus assembly. The E1 viral membrane
protein is required for formation of the viral envelope
and is transported via the Golgi complex.
Length = 221
Score = 25.0 bits (55), Expect = 5.9
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 83 AMIFTIIMVAICFVGSMWVMYHLN 106
F+IIM I + MW+MY +N
Sbjct: 75 FFGFSIIMACITGI--MWIMYFVN 96
>gnl|CDD|37512 KOG2301, KOG2301, KOG2301, Voltage-gated Ca2+ channels, alpha1
subunits [Inorganic ion transport and metabolism, Signal
transduction mechanisms].
Length = 1592
Score = 24.9 bits (54), Expect = 6.5
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 24 FILSLILTIIPFGIVM----KGFFLDKNIMCLTIVLCAIAQI-IVHLVFFLHMSTKVEDG 78
F L ++ TII +VM +++ + + + I+ FF + + D
Sbjct: 78 FSLFILATIIANCVVMAMTPLNYWILAAEYTFLGIFTFESVVKILARGFFRCDFSYLRDP 137
Query: 79 WSIMAMIFTIIMVAI 93
W+ + F +I++ +
Sbjct: 138 WNWLD--FVVIVIGL 150
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.336 0.143 0.457
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,485,566
Number of extensions: 76062
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 150
Length of query: 119
Length of database: 6,263,737
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,513,408
Effective search space: 171509504
Effective search space used: 171509504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.4 bits)