RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780471|ref|YP_003064884.1| cytochrome o ubiquinol oxidase
subunit IV [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
           blood coagulation, oxidoreductase, blood
           coagulation,oxidoreductase; HET: U10; 3.60A
           {Synechococcus SP}
          Length = 291

 Score = 25.3 bits (55), Expect = 3.2
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 12/95 (12%)

Query: 20  CLVGFILSLILTIIPFGIVMKGFFLDKNIMC-----------LTIVLCAIAQIIVHLVFF 68
             +G +L+  LT           F   +              L I   A+  +    V  
Sbjct: 27  AGLGSLLTAYLTYTKLTEQ-PAAFCTGDGGSDLVLSSRWAEFLGIPTAAVGLLGFLGVLA 85

Query: 69  LHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMY 103
           L +                  +V+      M+++Y
Sbjct: 86  LAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLY 120


>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC
           AMP; 2.30A {Escherichia coli K12}
          Length = 671

 Score = 24.0 bits (51), Expect = 7.7
 Identities = 9/65 (13%), Positives = 18/65 (27%)

Query: 55  LCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSMEG 114
           L   AQ    L  F+       DG     +   +    +     ++ +       +   G
Sbjct: 430 LICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMG 489

Query: 115 MRSIH 119
            +S  
Sbjct: 490 PKSAQ 494


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.336    0.143    0.457 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,021,024
Number of extensions: 39808
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 30
Length of query: 119
Length of database: 5,693,230
Length adjustment: 80
Effective length of query: 39
Effective length of database: 3,753,710
Effective search space: 146394690
Effective search space used: 146394690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.7 bits)