HHsearch alignment for GI: 254780472 and conserved domain: MTH00028
>MTH00028 COX3 cytochrome c oxidase subunit III; Provisional.
Probab=100.00 E-value=0 Score=315.68 Aligned_cols=192 Identities=27% Similarity=0.507 Sum_probs=163.2
Q ss_pred EEEECCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCCC-CHHHHHHH
Q ss_conf 4653077657-------2025660268889999999999999999999427888-----8886-6000024-03578999
Q gi|254780472|r 14 LFYVKDKKES-------CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFDI-SGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~-------~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~~-~~~~~nT~ 79 (210)
T Consensus 56 ~WwrDVi~Es~~~G~hT~~V~~glr~GM~lFI~SEVmFF~sfFwAff~~~l~p~~elG~~WPP~Gi~~~~p~~iPllNT~ 135 (297)
T MTH00028 56 AWWRDVIREGTHQGHHTQIVVRGLKLGMLLFILSEVCLFFAFFWAFFHSSLAPSVELGSVWPPKGIEALDPFAVPLLNTT 135 (297)
T ss_pred HHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999999970486786788657605679999999999999999987410363287578589989518985657754434
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333-----------------------------------3688776558999999999889999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKR-----------------------------------LIHKTVSWLLVTAFFGMIFIIMEIY 124 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~-----------------------------------~~~~~~~~L~~t~~lG~~Fl~~Q~~ 124 (210)
T Consensus 136 iLLsSG~tvTwah~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~L~~Ti~LG~~F~~~Q~~ 215 (297)
T MTH00028 136 ILLSSGATVTWAHHAIIGTGNPASLEKGTQGIEGPNPSNGAPPDPQKGPTFLLSDFRTNAVIGLLMTILLGIIFTGLQAF 215 (297)
T ss_pred EEECCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 33047761334668887076310001232110123432221000012256654404889999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87554311100147860167999989979999999999999999997079983042679999899999999999999999
Q gi|254780472|r 125 EFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFV 204 (210)
Q Consensus 125 E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~ll 204 (210)
T Consensus 216 EY~~---~~f~~~d~vygS~Ff~~TGfHG~HVi~G~~~l~~~~~r~~~~~~~~~~h~~~e~~~~YWHFVDvVWlflf~~v 292 (297)
T MTH00028 216 EYKE---ASFAISDSVYGSTFFMLTGTHGLHVLVGTTFLIVCFIRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFV 292 (297)
T ss_pred HHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 9961---8763126620138998753568899999999999999997179995402689999988766564561034015
Q ss_pred HHHH
Q ss_conf 9982
Q gi|254780472|r 205 YLMG 208 (210)
Q Consensus 205 Yl~g 208 (210)
T Consensus 293 YwWG 296 (297)
T MTH00028 293 YWWG 296 (297)
T ss_pred EEEC
T ss_conf 5847