HHsearch alignment for GI: 254780472 and conserved domain: MTH00118
>MTH00118 COX3 cytochrome c oxidase subunit III; Provisional.
Probab=100.00 E-value=0 Score=330.32 Aligned_cols=191 Identities=22% Similarity=0.447 Sum_probs=165.7
Q ss_pred EEEECCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHH
Q ss_conf 46530776572-------025660268889999999999999999999427888-----8886-600002-403578999
Q gi|254780472|r 14 LFYVKDKKESC-------VDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~~-------~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~ 79 (210)
T Consensus 56 ~W~rDvi~Es~~~G~ht~~v~~glr~Gm~lFI~SEvmfF~sfFwaff~~~l~p~~elg~~WPP~gi~~~~p~~iPllNT~ 135 (261)
T MTH00118 56 QWWRDIVRESTFQGHHTPTVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGQWPPTGIKPLNPFEVPLLNTA 135 (261)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEECCCCCCCCCCCCCCHHHHH
T ss_conf 99998763214588770998711479889999999999999999999987232120085508998045662247098899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
T Consensus 136 iLlsSg~tvt~Ah~al~~g-~~~~~~~~L~~Ti~LG~~F~~~Q~~EY~~---~~ft~~d~vyGS~Fy~~TGfHG~HViiG 211 (261)
T MTH00118 136 VLLASGVTVTWAHHSIMEG-NRKQAIHALTLTILLGLYFTALQAMEYYE---APFTIADSVYGSTFFVATGFHGLHVIIG 211 (261)
T ss_pred HHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9971006899999999997-79999999999999999999999999921---8775578608889999984999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999970799830426799998999999999999999999982
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
T Consensus 212 ~~~L~v~~~r~~~~~~~~~~h~~~e~a~~YWHFVDvVWlflf~~vY~WG 260 (261)
T MTH00118 212 SSFLLVCLLRLIKFHFTTNHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260 (261)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 9999999999972888865432689888677675555602534400747