HHsearch alignment for GI: 254780472 and conserved domain: TIGR02842
>TIGR02842 CyoC cytochrome o ubiquinol oxidase, subunit III; InterPro: IPR014206 This entry represents subunit 3 (CyoC) of the cytochrome o terminal oxidase complex, which is a component of the aerobic respiratory chain that reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilise cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant..
Probab=100.00 E-value=0 Score=306.36 Aligned_cols=179 Identities=57% Similarity=1.065 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26888999999999999999999942788888866000024035789999999999999999999633336887765589
Q gi|254780472|r 31 YLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLV 110 (210)
Q Consensus 31 ~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~ 110 (210)
T Consensus 2 ~fGFW~YLMSDCiLFA~LFAtyaVL~~~~a~GP~g~~lF~L~~V~~ET~lLL~SS~T~G~A~l~~~~~-~~~~v~~WL~i 80 (180)
T TIGR02842 2 VFGFWLYLMSDCILFATLFATYAVLSNNTAGGPSGKELFDLPFVLVETFLLLLSSITFGLAMLAMNKK-NKKKVILWLAI 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_conf 64146799988999999998987860145787864200035669999999998889999999999720-47689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999889999875543111001478601679999899799999999999999999970799830426799998999
Q gi|254780472|r 111 TAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFW 190 (210)
Q Consensus 111 t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~~~~~YW 190 (210)
T Consensus 81 TF~LG~~Fi~mE~~EF~~Li~~G~GP~rSAFLS~FFtLVGTHGlHV~~GLIWi~vmi~q~~~~Gl~~~~~~RL~CLSLFW 160 (180)
T TIGR02842 81 TFLLGLGFIGMEIYEFYHLIAEGNGPDRSAFLSAFFTLVGTHGLHVTSGLIWIIVMIIQVKKYGLTKSNRRRLACLSLFW 160 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
T ss_conf 99999999999999999998648899813789999999998669999999999999999986089998999999861137
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999998209
Q gi|254780472|r 191 HFLDLIWICVFSFVYLMGVV 210 (210)
Q Consensus 191 HFVdivWi~lf~llYl~g~~ 210 (210)
T Consensus 161 HFLDIvWIcVFT~VYL~G~~ 180 (180)
T TIGR02842 161 HFLDIVWICVFTFVYLLGVL 180 (180)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 66653644312188851139