HHsearch alignment for GI: 254780472 and conserved domain: cd00386
>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=100.00 E-value=0 Score=314.06 Aligned_cols=181 Identities=32% Similarity=0.639 Sum_probs=166.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72025660268889999999999999999999427888888-66000024035789999999999999999999633336
Q gi|254780472|r 23 SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGP-APIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLI 101 (210)
Q Consensus 23 ~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~-~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~ 101 (210)
T Consensus 2 ~~~~~~~~~~g~w~fi~sE~~~F~~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~~~T~~L~~Ss~~~~~a~~~~~~-~~~ 80 (183)
T cd00386 2 TASVRSGGRLGMWLFILSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLLSGSSVTWAHASLAARR-GNR 80 (183)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH
T ss_conf 8477428589999999999999999999999999817864311011320038999999999999999999999984-888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 88776558999999999889999875543111001478601679999899799999999999999999970799830426
Q gi|254780472|r 102 HKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQR 181 (210)
Q Consensus 102 ~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~ 181 (210)
T Consensus 81 ~~~~~~L~~t~~LG~~Fl~~q~~E~~~l---~~~~~~~~~~s~f~~ltglH~~HVi~Gl~~l~~~~~~~~~~~~~~~~~~ 157 (183)
T cd00386 81 KKARLWLLLTILLGLAFLGLQAYEYSHL---IFTISDSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHL 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 8899999999999999999999999983---4666567406599999999999999999999999999981789921445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999899999999999999999998
Q gi|254780472|r 182 RLICLSMFWHFLDLIWICVFSFVYLM 207 (210)
Q Consensus 182 ~~~~~~~YWHFVdivWi~lf~llYl~ 207 (210)
T Consensus 158 ~~~~~~~YWHFVD~vWi~lf~~lYl~ 183 (183)
T cd00386 158 GLEAAALYWHFVDVVWLFLFPLVYLW 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78999879999999999999999949