HHsearch alignment for GI: 254780472 and conserved domain: cd00386

>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=100.00  E-value=0  Score=314.06  Aligned_cols=181  Identities=32%  Similarity=0.639  Sum_probs=166.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             72025660268889999999999999999999427888888-66000024035789999999999999999999633336
Q gi|254780472|r   23 SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGP-APIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLI  101 (210)
Q Consensus        23 ~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~-~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~  101 (210)
T Consensus         2 ~~~~~~~~~~g~w~fi~sE~~~F~~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~~~T~~L~~Ss~~~~~a~~~~~~-~~~   80 (183)
T cd00386           2 TASVRSGGRLGMWLFILSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLLSGSSVTWAHASLAARR-GNR   80 (183)
T ss_pred             CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH
T ss_conf             8477428589999999999999999999999999817864311011320038999999999999999999999984-888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             88776558999999999889999875543111001478601679999899799999999999999999970799830426
Q gi|254780472|r  102 HKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQR  181 (210)
Q Consensus       102 ~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~  181 (210)
T Consensus        81 ~~~~~~L~~t~~LG~~Fl~~q~~E~~~l---~~~~~~~~~~s~f~~ltglH~~HVi~Gl~~l~~~~~~~~~~~~~~~~~~  157 (183)
T cd00386          81 KKARLWLLLTILLGLAFLGLQAYEYSHL---IFTISDSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHL  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             8899999999999999999999999983---4666567406599999999999999999999999999981789921445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             79999899999999999999999998
Q gi|254780472|r  182 RLICLSMFWHFLDLIWICVFSFVYLM  207 (210)
Q Consensus       182 ~~~~~~~YWHFVdivWi~lf~llYl~  207 (210)
T Consensus       158 ~~~~~~~YWHFVD~vWi~lf~~lYl~  183 (183)
T cd00386         158 GLEAAALYWHFVDVVWLFLFPLVYLW  183 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             78999879999999999999999949