HHsearch alignment for GI: 254780472 and conserved domain: cd02862
>cd02862 NorE_like NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.
Probab=100.00 E-value=0 Score=336.06 Aligned_cols=184 Identities=27% Similarity=0.576 Sum_probs=171.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7202566026888999999999999999999942788888-866000024035789999999999999999999633336
Q gi|254780472|r 23 SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAG-PAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLI 101 (210)
Q Consensus 23 ~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~-~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~ 101 (210)
T Consensus 2 ~~~~r~pgk~G~w~Fi~Se~m~F~~l~~ay~~~r~~~p~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~~~~~~-~~ 80 (186)
T cd02862 2 AAAQRLPGKLGMWVFILSELLAFGALFIAYAVYRALYPELFAAGSAHLDLLLGALNTLVLLTSSFTVALAVRAARAG-RR 80 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH
T ss_conf 86666895899999999999999999999999983585435454232472589999999999999999999999958-89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 88776558999999999889999875543111001478601679999899799999999999999999970799830426
Q gi|254780472|r 102 HKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQR 181 (210)
Q Consensus 102 ~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~ 181 (210)
T Consensus 81 ~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~s~fy~lTGlH~lHV~~Gli~l~~~~~~~~~~~~~~~~~~ 160 (186)
T cd02862 81 RRARRWLAAAVLLGLVFLVIKYFEYAHKIAAGIDPDAGLFFTLYFLLTGFHLLHVLIGLGILLWVAWRARRGRYSARDYE 160 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999999999999999999999999768987776179999999999999999999999999999980799800557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999899999999999999999998
Q gi|254780472|r 182 RLICLSMFWHFLDLIWICVFSFVYLM 207 (210)
Q Consensus 182 ~~~~~~~YWHFVdivWi~lf~llYl~ 207 (210)
T Consensus 161 ~~e~~~~YWHFvDivWi~lf~~lYll 186 (186)
T cd02862 161 GVEAAALYWHMVDLVWIVLFPLLYLV 186 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999989989999999998899949