HHsearch alignment for GI: 254780472 and conserved domain: cd02863
>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Probab=100.00 E-value=0 Score=350.03 Aligned_cols=184 Identities=54% Similarity=1.039 Sum_probs=175.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20256602688899999999999999999994278888886600002403578999999999999999999963333688
Q gi|254780472|r 24 CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHK 103 (210)
Q Consensus 24 ~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~ 103 (210)
T Consensus 3 ~~~~~~~~lG~wlFi~Se~~~F~~lf~ay~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~t~~~a~~~~~~-~~~~~ 81 (186)
T cd02863 3 TNTGSKKILGFWIYLMSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFTCGLAMIAMNK-NNKKK 81 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 88998663869999999999999999999999973588987200145218999999999999999999999998-43999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 77655899999999988999987554311100147860167999989979999999999999999997079983042679
Q gi|254780472|r 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRL 183 (210)
Q Consensus 104 ~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~ 183 (210)
T Consensus 82 ~~~~L~~t~~lG~~Fl~~q~~E~~~l~~~g~~~~~~~~~s~fy~lTg~H~lHVl~Gli~l~~~~~~~~~~~~~~~~~~~~ 161 (186)
T cd02863 82 VILWLIITFLLGLGFVGMEIYEFHHLIAEGAGPDRSAFLSAFFTLVGTHGLHVTFGLIWILVMIIQLKKRGLTPDTARRL 161 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999999999999999999999999967999766731529999999999999999999999999997179984325889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998999999999999999999982
Q gi|254780472|r 184 ICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 184 ~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
T Consensus 162 e~~~~YWHFvDivWi~lf~~lYl~G 186 (186)
T cd02863 162 FCLSLFWHFLDIVWIFVFTVVYLLG 186 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999899999999999998998359