HHsearch alignment for GI: 254780472 and conserved domain: cd02864
>cd02864 Heme_Cu_Oxidase_III_1 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=100.00 E-value=0 Score=318.30 Aligned_cols=183 Identities=27% Similarity=0.503 Sum_probs=156.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHC-------CCC--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20256602688899999999999999999994278888886-60000-------240--357899999999999999999
Q gi|254780472|r 24 CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPA-PIDVF-------DIS--GIFVSTIVLLLSSLSCSFAML 93 (210)
Q Consensus 24 ~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~-~~~~~-------~~~--~~~~nT~iLl~SS~~~~~a~~ 93 (210)
T Consensus 3 ~~~~~~gklgmWiFi~SE~m~F~~lf~ay~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~T~vLl~SS~t~~~A~~ 82 (202)
T cd02864 3 PFKVSWGKAMMWFFLLSDAFIFSSFLIAYMTARISTTEPWPLPSDVFALRIGHFNIPLVLIAIMTFILITSSGTMAMAVN 82 (202)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88799947999999999999999999999999971577788742125777443322289999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996333368877655899999999988999987554311------10014786016799998997999999999999999
Q gi|254780472|r 94 ASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISM------EAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLV 167 (210)
Q Consensus 94 a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~------g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~ 167 (210)
T Consensus 83 a~~~-~~~~~~~~~L~~T~~LG~~Fl~~q~~E~~~l~~~~~~~~~~~~~~~~~f~s~fy~lTG~HglHV~~Gli~l~~~~ 161 (202)
T cd02864 83 FGYR-GNRKAAARLMLATALLGATFVGMQAFEWTKLIVEEGVRPWGNPWGAAQFGASFFMITGFHGTHVTIGVIYLIIIA 161 (202)
T ss_pred HHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9995-889999999999999999999999999999986045565677765206898999999899999999999999999
Q ss_pred HHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99970799830-42679999899999999999999999998
Q gi|254780472|r 168 IQILKKGLISG-NQRRLICLSMFWHFLDLIWICVFSFVYLM 207 (210)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~YWHFVdivWi~lf~llYl~ 207 (210)
T Consensus 162 ~~~~~~~~~~~~~~~~~e~~~~YWHFVDvvWi~lF~~lYlw 202 (202)
T cd02864 162 RKVWRGKYQRIGRYEIVEIAGLYWHFVDLVWVFIFAFFYLW 202 (202)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99970788975404999999999999999999898899819