HHsearch alignment for GI: 254780472 and conserved domain: cd02865

>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=100.00  E-value=0  Score=321.83  Aligned_cols=181  Identities=20%  Similarity=0.347  Sum_probs=167.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             20256602688899999999999999999994278888886600002403578999999999999999999963333688
Q gi|254780472|r   24 CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHK  103 (210)
Q Consensus        24 ~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~  103 (210)
T Consensus         3 ~g~~spg~~G~w~fi~se~~~F~~l~~~y~~~~~~~~~~~~-~~~~~~~~~~~nT~~Ll~SS~~~~~A~~a~~~-~~~~~   80 (184)
T cd02865           3 AGARSPGWWGLWVFMAVEGTLFALLISAYFMRMTSGDWQPG-APLPLPNLLSLNTAVLAASSVAMQWARRAARR-NRRVL   80 (184)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHH
T ss_conf             89899958999999999999999999999999974886777-65554018999999999999999999999994-98999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             77655899999999988999987554311100147860167999989979999999999999999997079983042679
Q gi|254780472|r  104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRL  183 (210)
Q Consensus       104 ~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~  183 (210)
T Consensus        81 ~~~~L~~t~~LG~~Fl~~q~~E~~~l~~~g~~~~~~~~~s~fy~lTg~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~  160 (184)
T cd02865          81 ARLGLALAGALALAFLAGQLLAWHALNDAGYGPTSNPAGSFFYLLTGLHGLHVIGGLVALAIVLAGLIRGHYGPRRRLPV  160 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999999999999999999999975887544038999999999999999999999999999998379983467889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99989999999999999999999
Q gi|254780472|r  184 ICLSMFWHFLDLIWICVFSFVYL  206 (210)
Q Consensus       184 ~~~~~YWHFVdivWi~lf~llYl  206 (210)
T Consensus       161 e~~~~YWHFvd~vWi~lf~~lYl  183 (184)
T cd02865         161 ELCALYWHFLLLVWLVLLALLYG  183 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999983