Query gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs 109 out of 1772
Neff 7.0
Searched_HMMs 39220
Date Sun May 29 16:55:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780472.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10663 cytochrome o ubiquino 100.0 0 0 359.2 22.6 184 26-210 21-204 (204)
2 COG1845 CyoC Heme/copper-type 100.0 0 0 352.2 22.4 199 7-210 10-209 (209)
3 cd02863 Ubiquinol_oxidase_III 100.0 0 0 350.0 22.8 184 24-208 3-186 (186)
4 cd02862 NorE_like NorE_like su 100.0 0 0 336.1 22.7 184 23-207 2-186 (186)
5 MTH00130 COX3 cytochrome c oxi 100.0 0 0 331.8 17.3 191 14-208 56-260 (261)
6 MTH00099 COX3 cytochrome c oxi 100.0 0 0 331.2 16.6 192 13-208 55-260 (261)
7 MTH00118 COX3 cytochrome c oxi 100.0 0 0 330.3 17.2 191 14-208 56-260 (261)
8 MTH00075 COX3 cytochrome c oxi 100.0 0 0 328.5 18.3 191 14-208 56-260 (261)
9 MTH00189 COX3 cytochrome c oxi 100.0 0 0 328.5 17.7 191 14-208 55-259 (260)
10 MTH00155 COX3 cytochrome c oxi 100.0 0 0 329.7 16.4 191 14-208 56-260 (261)
11 pfam00510 COX3 Cytochrome c ox 100.0 0 0 326.3 18.1 184 21-208 67-257 (258)
12 cd02865 Heme_Cu_Oxidase_III_2 100.0 0 0 321.8 22.3 181 24-206 3-183 (184)
13 MTH00009 COX3 cytochrome c oxi 100.0 0 0 325.0 19.2 184 21-208 68-258 (259)
14 MTH00039 COX3 cytochrome c oxi 100.0 0 0 327.6 16.6 184 21-208 69-259 (260)
15 MTH00052 COX3 cytochrome c oxi 100.0 0 0 324.6 18.4 184 21-208 71-261 (262)
16 cd01665 Cyt_c_Oxidase_III Cyto 100.0 0 0 322.0 20.1 190 14-207 40-243 (243)
17 MTH00024 COX3 cytochrome c oxi 100.0 0 0 323.5 18.5 184 21-208 70-260 (261)
18 MTH00141 COX3 cytochrome c oxi 100.0 0 0 321.7 19.1 183 22-208 69-258 (259)
19 cd02864 Heme_Cu_Oxidase_III_1 100.0 0 0 318.3 21.9 183 24-207 3-202 (202)
20 MTH00083 COX3 cytochrome c oxi 100.0 0 0 318.2 18.9 184 20-208 65-255 (256)
21 cd00386 Heme_Cu_Oxidase_III_li 100.0 0 0 314.1 21.4 181 23-207 2-183 (183)
22 MTH00028 COX3 cytochrome c oxi 100.0 0 0 315.7 11.9 192 14-208 56-296 (297)
23 TIGR02842 CyoC cytochrome o ub 100.0 0 0 306.4 20.1 179 31-210 2-180 (180)
24 MTH00049 COX3 cytochrome c oxi 100.0 0 0 279.7 17.3 168 24-206 47-214 (215)
25 TIGR02897 QoxC cytochrome aa3 100.0 0 0 265.9 17.0 184 26-210 6-190 (190)
26 KOG4664 consensus 100.0 9.8E-45 0 258.0 1.8 192 14-209 56-261 (261)
27 COG2322 Predicted membrane pro 95.4 0.14 3.6E-06 26.5 15.4 164 32-206 11-175 (177)
28 pfam04238 DUF420 Protein of un 93.5 0.42 1.1E-05 23.9 14.0 102 75-179 6-108 (133)
29 COG2978 AbgT Putative p-aminob 58.5 11 0.00029 16.3 7.0 137 21-166 260-404 (516)
30 PRK02504 NAD(P)H-quinone oxido 21.9 49 0.0012 12.9 10.3 45 76-120 84-128 (514)
31 pfam05393 Hum_adeno_E3A Human 21.6 50 0.0013 12.8 3.4 27 26-54 27-53 (94)
32 pfam11694 DUF3290 Protein of u 21.6 50 0.0013 12.8 7.1 37 92-129 35-71 (149)
No 1
>PRK10663 cytochrome o ubiquinol oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=359.24 Aligned_cols=184 Identities=52% Similarity=0.983 Sum_probs=174.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25660268889999999999999999999427888888660000240357899999999999999999996333368877
Q gi|254780472|r 26 DHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTV 105 (210)
Q Consensus 26 ~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~~~ 105 (210)
+.+++.+|||+||+||+|+|+++|++|.+++...+.+|++++.++++.+.+||.+|++||.++++|+++.+++ ++++.+
T Consensus 21 ~~~~~~~GmWlFL~SE~~~F~~LFaaY~v~~~~~~~~p~~~~~~~~~~~~inT~iLl~SS~t~~~A~~a~~~g-~~~~~~ 99 (204)
T PRK10663 21 AGATKVFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKN-NKSQVI 99 (204)
T ss_pred CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH
T ss_conf 8877542029999999999999999999998166789971775141499999999999999999999999839-899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 65589999999998899998755431110014786016799998997999999999999999999707998304267999
Q gi|254780472|r 106 SWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLIC 185 (210)
Q Consensus 106 ~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~~ 185 (210)
.|+..|+++|+.|+++|.+||.+++++|++|++|+|+|+||++||+|++||++|++++.++.+|..+++++++++.++|.
T Consensus 100 ~~L~~T~~LG~~Fl~~q~~Ey~~li~~G~~~~~~~f~s~ff~lTG~HglHV~~Gli~l~~~~~~~~~~~~~~~~~~~ve~ 179 (204)
T PRK10663 100 SWLALTFLFGAGFIGMEIYEFHHLIVEGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQVARRGLTSTNRTRIMC 179 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99999999999999999999999998679887651999999999899999999999999999999807898530289999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9899999999999999999998209
Q gi|254780472|r 186 LSMFWHFLDLIWICVFSFVYLMGVV 210 (210)
Q Consensus 186 ~~~YWHFVdivWi~lf~llYl~g~~ 210 (210)
+++||||||+||+++|+++|++|++
T Consensus 180 ~~lYWHFVDvVWI~lF~lvYL~G~~ 204 (204)
T PRK10663 180 LSLFWHFLDVVWICVFTVVYLMGAM 204 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999985179
No 2
>COG1845 CyoC Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]
Probab=100.00 E-value=0 Score=352.23 Aligned_cols=199 Identities=37% Similarity=0.714 Sum_probs=180.5
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-HHHCCCCHHHHHHHHHHHHH
Q ss_conf 16987024653077657202566026888999999999999999999942788888866-00002403578999999999
Q gi|254780472|r 7 GKSPNFSLFYVKDKKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAP-IDVFDISGIFVSTIVLLLSS 85 (210)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~-~~~~~~~~~~~nT~iLl~SS 85 (210)
-.+++ ....+++++++.. .++.++|||+||+||+++|+++|++|++.|.+++.||++ .+..+++++++||.+|++||
T Consensus 10 ~~~~~-~~~~~~~~~~~~~-~~~~~~G~wvFl~SE~~~Fa~lfaay~~~~~~~~~wp~~~~~~~~~~l~~inT~iLl~SS 87 (209)
T COG1845 10 WANDG-AAAAAAGEHHTDV-GGNGRLGFWVFLMSEVALFASLFAAYFVARASTAGWPPAGTELFDLPLVLINTFILLSSS 87 (209)
T ss_pred HHCCC-CCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 53123-3333455567787-766512899999999999999999999998503578998642345007999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999996333368877655899999999988999987554311100147860167999989979999999999999
Q gi|254780472|r 86 LSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFV 165 (210)
Q Consensus 86 ~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~ 165 (210)
.++++|+.+.+|+| +++.+.|+.+|+++|+.|+.+|++||+++.+ .++++|+|+|.||++||+||+||..|++++.+
T Consensus 88 ~t~~~A~~a~~~~~-~~~~~~wL~~T~lLG~~Fv~~q~yE~~hl~~--~~~~~~~f~S~Ff~ltG~HGlHV~~Gli~l~~ 164 (209)
T COG1845 88 FTCGLAVHALRRGN-RKGARAWLLLTLLLGAAFVGGQLYEYYHLIA--FGLTASAFGSAFFLLTGFHGLHVTFGLIWLLV 164 (209)
T ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998177-9889999999999999999999999999985--38561389999999981789999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999997079983042679999899999999999999999998209
Q gi|254780472|r 166 LVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMGVV 210 (210)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g~~ 210 (210)
+.+|..+++..++++.++|++++||||||+||+++|+++|++|+.
T Consensus 165 ~~~r~~~~g~~~~~~~~v~~~s~YWHFvDvVWi~lF~~vYl~g~~ 209 (209)
T COG1845 165 LLWRIARRGLTTRNHTGVEAASLYWHFVDVVWIFLFTLVYLWGAL 209 (209)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999997168997655158999999999999999999999987339
No 3
>cd02863 Ubiquinol_oxidase_III Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.
Probab=100.00 E-value=0 Score=350.03 Aligned_cols=184 Identities=54% Similarity=1.039 Sum_probs=175.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20256602688899999999999999999994278888886600002403578999999999999999999963333688
Q gi|254780472|r 24 CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHK 103 (210)
Q Consensus 24 ~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~ 103 (210)
....+++++|||+||+||+|+|+++|++|+++|.+.+++|++.+.++++.+.+||.+|++||+++++|+++.++ +++++
T Consensus 3 ~~~~~~~~lG~wlFi~Se~~~F~~lf~ay~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~t~~~a~~~~~~-~~~~~ 81 (186)
T cd02863 3 TNTGSKKILGFWIYLMSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFTCGLAMIAMNK-NNKKK 81 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 88998663869999999999999999999999973588987200145218999999999999999999999998-43999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 77655899999999988999987554311100147860167999989979999999999999999997079983042679
Q gi|254780472|r 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRL 183 (210)
Q Consensus 104 ~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~ 183 (210)
.+.|+..|+++|++|+++|.+||++++++|.++++|+|+|+||++||+|++||++|++.+.++.+|..+++.+++++.++
T Consensus 82 ~~~~L~~t~~lG~~Fl~~q~~E~~~l~~~g~~~~~~~~~s~fy~lTg~H~lHVl~Gli~l~~~~~~~~~~~~~~~~~~~~ 161 (186)
T cd02863 82 VILWLIITFLLGLGFVGMEIYEFHHLIAEGAGPDRSAFLSAFFTLVGTHGLHVTFGLIWILVMIIQLKKRGLTPDTARRL 161 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999999999999999999999999967999766731529999999999999999999999999997179984325889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998999999999999999999982
Q gi|254780472|r 184 ICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 184 ~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
|.+++||||||+||+++|+++|++|
T Consensus 162 e~~~~YWHFvDivWi~lf~~lYl~G 186 (186)
T cd02863 162 FCLSLFWHFLDIVWIFVFTVVYLLG 186 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999899999999999998998359
No 4
>cd02862 NorE_like NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.
Probab=100.00 E-value=0 Score=336.06 Aligned_cols=184 Identities=27% Similarity=0.576 Sum_probs=171.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7202566026888999999999999999999942788888-866000024035789999999999999999999633336
Q gi|254780472|r 23 SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAG-PAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLI 101 (210)
Q Consensus 23 ~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~-~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~ 101 (210)
+..+|..+|+|||+||+||+|+|++++++|.+.|...|++ +++.+.++++.+++||.+|++||.++++|+++.+++ ++
T Consensus 2 ~~~~r~pgk~G~w~Fi~Se~m~F~~l~~ay~~~r~~~p~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~~~~~~-~~ 80 (186)
T cd02862 2 AAAQRLPGKLGMWVFILSELLAFGALFIAYAVYRALYPELFAAGSAHLDLLLGALNTLVLLTSSFTVALAVRAARAG-RR 80 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH
T ss_conf 86666895899999999999999999999999983585435454232472589999999999999999999999958-89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 88776558999999999889999875543111001478601679999899799999999999999999970799830426
Q gi|254780472|r 102 HKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQR 181 (210)
Q Consensus 102 ~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~ 181 (210)
++.+.++..|+++|++|+++|.+||++++++|.++++|+|+|+||++||+|++||++|++++.++.+|.++++.+++++.
T Consensus 81 ~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~s~fy~lTGlH~lHV~~Gli~l~~~~~~~~~~~~~~~~~~ 160 (186)
T cd02862 81 RRARRWLAAAVLLGLVFLVIKYFEYAHKIAAGIDPDAGLFFTLYFLLTGFHLLHVLIGLGILLWVAWRARRGRYSARDYE 160 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999999999999999999999999768987776179999999999999999999999999999980799800557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999899999999999999999998
Q gi|254780472|r 182 RLICLSMFWHFLDLIWICVFSFVYLM 207 (210)
Q Consensus 182 ~~~~~~~YWHFVdivWi~lf~llYl~ 207 (210)
++|.+++||||||+||+++|+++|++
T Consensus 161 ~~e~~~~YWHFvDivWi~lf~~lYll 186 (186)
T cd02862 161 GVEAAALYWHMVDLVWIVLFPLLYLV 186 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999989989999999998899949
No 5
>MTH00130 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=331.76 Aligned_cols=191 Identities=21% Similarity=0.443 Sum_probs=165.9
Q ss_pred EEEECCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCC-CHHHCC-CCHHHHHHH
Q ss_conf 4653077657202-------56602688899999999999999999994278888-----886-600002-403578999
Q gi|254780472|r 14 LFYVKDKKESCVD-------HDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAA-----GPA-PIDVFD-ISGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~~~~-------~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~-----~~~-~~~~~~-~~~~~~nT~ 79 (210)
.||++.-+|+..+ ++|-|+||.+||+||+|+|.++|++|+..+..... ||| +.++.+ ..+|++||.
T Consensus 56 ~W~rDvi~Es~~~G~ht~~v~~glr~Gm~lFI~SEvmfF~sfFwaffh~~l~p~~~lg~~WPP~gi~~~~p~~lPLlNT~ 135 (261)
T MTH00130 56 QWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITTLDPFEVPLLNTA 135 (261)
T ss_pred HHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99998750046788781888626338999999999999999999999997065212387659998715784447188899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
+|++||.++++|+++.+++ +++.++.++..|+++|..|+.+|.+||.+ .+++++|++|||.||++||+||+||++|
T Consensus 136 iLLsSg~tvt~Ah~al~~g-~~~~~~~~L~~Ti~LG~~F~~~Q~~Ey~~---~~ft~~d~vygS~Ff~~TGfHG~HViiG 211 (261)
T MTH00130 136 VLLASGVTVTWAHHSIMEG-ERKQAIQSLTLTILLGFYFTFLQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIG 211 (261)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9970357899999999836-89999999999999999999999999982---7841047708999999987999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999970799830426799998999999999999999999982
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++|.++..|..+++++++++.++|++++||||||+||+++|+++|+||
T Consensus 212 ~~~L~v~~~r~~~~~~~~~~h~~~e~a~~YWHFVDvVWlflf~~iY~WG 260 (261)
T MTH00130 212 STFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260 (261)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 9999999999973888855342356646246666656733544500747
No 6
>MTH00099 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=0 Score=331.20 Aligned_cols=192 Identities=23% Similarity=0.446 Sum_probs=166.0
Q ss_pred EEEEECCCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHH
Q ss_conf 2465307765720-------25660268889999999999999999999427888-----8886-600002-40357899
Q gi|254780472|r 13 SLFYVKDKKESCV-------DHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVST 78 (210)
Q Consensus 13 ~~~~~~~~~~~~~-------~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT 78 (210)
..||++.-+|+.. .++|-|+||.+||+||+|+|.++|++|+..+.... .||| +.++++ ..+|++||
T Consensus 55 ~~W~rDvi~Es~~~G~ht~~v~~glr~Gm~lFI~SEvmfF~sfFwaffh~~l~p~~elg~~WPP~gi~~~~p~~lPllNT 134 (261)
T MTH00099 55 YQWWRDIIRESTFQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFYHSSLAPTPELGGCWPPTGITPLNPLEVPLLNT 134 (261)
T ss_pred HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEECCCCCCCHHHHH
T ss_conf 99999874531458988499985003351899999999999999999999713053109867999800367233628889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999633336887765589999999998899998755431110014786016799998997999999
Q gi|254780472|r 79 IVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFF 158 (210)
Q Consensus 79 ~iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~ 158 (210)
++|++||.++++|+++.+++ ++++++.+|..|+++|..|+.+|..||.+ .+++++|++|||.||++||+||+||++
T Consensus 135 ~ILLsSg~tvt~Ah~al~~~-~~~~~~~~L~~Ti~LG~~F~~~Q~~Ey~~---~~ft~~d~vygS~Ff~~TGfHG~HVii 210 (261)
T MTH00099 135 SVLLASGVSITWAHHSLMEG-NRKHMLQALFITILLGLYFTLLQASEYYE---APFTISDGIYGSTFFMATGFHGLHVII 210 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99970146799999999985-49999999999999999999999999974---877615870788999999899999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999970799830426799998999999999999999999982
Q gi|254780472|r 159 GLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 159 Gli~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
|+++|.++..|..+++++++++.++|++++||||||+||+++|.++|+||
T Consensus 211 G~~~L~~~~~r~~~~~~~~~~h~~~e~a~~YWHFVDvVWlflf~~iY~WG 260 (261)
T MTH00099 211 GSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260 (261)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 99999999999980788866341467767377776747853432334857
No 7
>MTH00118 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=330.32 Aligned_cols=191 Identities=22% Similarity=0.447 Sum_probs=165.7
Q ss_pred EEEECCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHH
Q ss_conf 46530776572-------025660268889999999999999999999427888-----8886-600002-403578999
Q gi|254780472|r 14 LFYVKDKKESC-------VDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~~-------~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~ 79 (210)
.||++.-+|+. ..++|-|+||.+||+||+|+|.++|++|+..+.... .||| +.++++ ...|++||.
T Consensus 56 ~W~rDvi~Es~~~G~ht~~v~~glr~Gm~lFI~SEvmfF~sfFwaff~~~l~p~~elg~~WPP~gi~~~~p~~iPllNT~ 135 (261)
T MTH00118 56 QWWRDIVRESTFQGHHTPTVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGQWPPTGIKPLNPFEVPLLNTA 135 (261)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEECCCCCCCCCCCCCCHHHHH
T ss_conf 99998763214588770998711479889999999999999999999987232120085508998045662247098899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
+|++||.++++|+++.+++ +++.++.++..|+++|..|+.+|..||.+ .+++++|++|||.||++||+||+||++|
T Consensus 136 iLlsSg~tvt~Ah~al~~g-~~~~~~~~L~~Ti~LG~~F~~~Q~~EY~~---~~ft~~d~vyGS~Fy~~TGfHG~HViiG 211 (261)
T MTH00118 136 VLLASGVTVTWAHHSIMEG-NRKQAIHALTLTILLGLYFTALQAMEYYE---APFTIADSVYGSTFFVATGFHGLHVIIG 211 (261)
T ss_pred HHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9971006899999999997-79999999999999999999999999921---8775578608889999984999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999970799830426799998999999999999999999982
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++|.++.+|..+++++++++.++|++++||||||+||+++|.++|+||
T Consensus 212 ~~~L~v~~~r~~~~~~~~~~h~~~e~a~~YWHFVDvVWlflf~~vY~WG 260 (261)
T MTH00118 212 SSFLLVCLLRLIKFHFTTNHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260 (261)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 9999999999972888865432689888677675555602534400747
No 8
>MTH00075 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=328.54 Aligned_cols=191 Identities=21% Similarity=0.442 Sum_probs=165.3
Q ss_pred EEEECCCCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHH
Q ss_conf 465307765720-------25660268889999999999999999999427888-----8886-600002-403578999
Q gi|254780472|r 14 LFYVKDKKESCV-------DHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~~~-------~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~ 79 (210)
.||++.-+|+.. .+++-|+||.+||+||+|+|.++|++|+..+.... .||| +.++.+ ..+|++||.
T Consensus 56 ~W~rdvi~Es~~~G~ht~~v~~g~~~Gm~lFI~SEvmfF~sfFwa~fh~~l~p~~e~g~~WPP~gi~~~~p~~lPllNT~ 135 (261)
T MTH00075 56 QWWRDIVREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYNSSLAPTPELGECWPPTGITPLDPFEVPLLNTA 135 (261)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99998731135688884999974689779999999999999999999997267634376289998625773337098899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
+|++||.++++|+++.+++ +++.++.++..|+++|..|+.+|..||.+ .+++++|++|||.||++||+||+||++|
T Consensus 136 iLLsSg~tvt~Ah~al~~~-~~~~~~~~L~~Ti~LG~~F~~~Q~~EY~~---~~ft~~d~vygS~Ff~~TGfHG~HViiG 211 (261)
T MTH00075 136 VLLASGVTVTWAHHSIMQG-NRKEAIQSLALTIILGLYFTALQAMEYYE---APFTIADGVYGSTFFVATGFHGLHVIIG 211 (261)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9971135899999999938-89999999999999999999999999997---7776468617899999984899999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999970799830426799998999999999999999999982
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++|.++..|..+++.+++++.++|++++||||||+||+++|+++|+||
T Consensus 212 ~~~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHFVDvVWlflf~~vY~WG 260 (261)
T MTH00075 212 SLFLLVCLLRQINFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260 (261)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 9999999999971888866550467767467675767854644520637
No 9
>MTH00189 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=328.53 Aligned_cols=191 Identities=21% Similarity=0.435 Sum_probs=164.9
Q ss_pred EEEECCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHH
Q ss_conf 4653077657-------2025660268889999999999999999999427888-----8886-600002-403578999
Q gi|254780472|r 14 LFYVKDKKES-------CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~-------~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~ 79 (210)
.|+++.-+|+ ...+++-|+||++||+||+|+|.++|++|+..+.... .||| +.++.+ ..++++||.
T Consensus 55 ~W~rdvi~E~~~~G~ht~~v~~~~~~Gm~lFI~SEvmfF~sfFwa~f~~~l~p~~~lg~~WPP~gi~~~~p~~lPllNT~ 134 (260)
T MTH00189 55 QWWRDVVREATFQGFHTSPVQKGLRYGMILFIISEVFFFLGFFWAFFHSSLAPTVELGMTWPPTGIHPLNPFEVPLLNTA 134 (260)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99987600422687785888813068889999999999999999998863455300287469998558994536288899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
+|++||.++++|+++.+++ ++++++.++..|+++|.+|+.+|..||.+ .+++++|++|||.||++||+||+||++|
T Consensus 135 iLlsSs~tvt~Ah~al~~~-n~~~~~~~L~~Ti~LG~~Fl~~Q~~EY~~---~~ft~~d~vygS~Ff~~TGfHG~HVi~G 210 (260)
T MTH00189 135 VLLSSGVTVTWAHHSLMEG-NRKEAIQALAFTVMLGLYFTALQAMEYYE---SPFTIADSVYGSTFFVATGFHGLHVIIG 210 (260)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9984889999999999817-69999999999999999999999999972---8786768608779999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999970799830426799998999999999999999999982
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++|.++..|..+++++++++.++|++++||||||+||+++|.++|+||
T Consensus 211 ~~~L~~~~~r~~~~~~~~~~~~~~e~~~~YWHFVDvVWlflf~~vY~WG 259 (260)
T MTH00189 211 STFLLVCLLRQVGYHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 259 (260)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 9999999999972789955207899999998873856832420133756
No 10
>MTH00155 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=329.70 Aligned_cols=191 Identities=24% Similarity=0.476 Sum_probs=164.2
Q ss_pred EEEECCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHH
Q ss_conf 4653077657-------2025660268889999999999999999999427888-----8886-600002-403578999
Q gi|254780472|r 14 LFYVKDKKES-------CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~-------~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~ 79 (210)
.||++.-+|+ ...+.+-|+||++||+||+|+|.++|++|+..+.... .||| +.++.+ ..++++||+
T Consensus 56 ~W~rDvi~Es~~~G~ht~~v~~glr~Gm~lFI~SEvmfF~sfFWa~f~~~l~p~~~~g~~WPP~gi~~~~p~~iPllNT~ 135 (261)
T MTH00155 56 QWWRDVSREGTFQGLHTLKVTKGLRWGMILFIISEVFFFISFFWAFFHSSLSPSIELGSIWPPLGIIPFNPFQIPLLNTA 135 (261)
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999840266688765899860257749999999999999999999887341002575689988266774456188889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
+|++||.++++|+++.+++ ++++++.+|..|+++|..|+.+|.+||.+ .+++++|++|||.||++||+||+||++|
T Consensus 136 iLl~S~~tvt~Ah~al~~~-~~~~~~~~L~~Ti~LG~~Fl~~Q~~EY~~---~~ft~~d~vygS~Ff~~TGfHG~HVi~G 211 (261)
T MTH00155 136 ILLSSGVTVTWAHHSLMEN-NYSQATQSLFITILLGIYFTILQAYEYYE---APFSIADSVYGSTFFMATGFHGLHVIIG 211 (261)
T ss_pred HHHCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9983028899999999828-79999999999999999999999999987---3788776539999999987999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999970799830426799998999999999999999999982
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++|.++.+|..+++++++++.+.|++++||||||+||+++|+++|+||
T Consensus 212 ~~~L~~~~~r~~~~~~~~~~~~~~e~a~~YWHFVDvVWlflf~~vY~WG 260 (261)
T MTH00155 212 TTFLLVCLIRHLNNHFSSNHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260 (261)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHEHHHHHHHEEC
T ss_conf 9999999999973899965341003403125553232431435530338
No 11
>pfam00510 COX3 Cytochrome c oxidase subunit III.
Probab=100.00 E-value=0 Score=326.27 Aligned_cols=184 Identities=22% Similarity=0.469 Sum_probs=161.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6572025660268889999999999999999999427888-----8886-600002-40357899999999999999999
Q gi|254780472|r 21 KESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTIVLLLSSLSCSFAML 93 (210)
Q Consensus 21 ~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~iLl~SS~~~~~a~~ 93 (210)
+|+....++-|+||++||+||.|+|.++|++|+..+.... .||| +.+..+ ..++++||.+|++||.++++|++
T Consensus 67 ~ht~~v~~~~~~Gm~~FI~SEvmfF~sfFwa~f~~~l~p~~~~g~~WPP~gi~~~~~~~lPllNT~iLl~Ss~t~t~Ah~ 146 (258)
T pfam00510 67 HHTKAVQKGLRYGMILFIVSEVMFFFSFFWAFFHSSLSPTVELGGTWPPVGIHPLNPFEVPLLNTIILLSSGVTVTWAHH 146 (258)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78299997688999999999999999999997786426647538606999812788121608778999728999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99633336887765589999999998899998755431110014786016799998997999999999999999999707
Q gi|254780472|r 94 ASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKK 173 (210)
Q Consensus 94 a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~ 173 (210)
+.+++ ++++++.++..|+++|.+|+.+|..||.+ .+++++|++|||.||++||+||+||++|+++|.++.+|..++
T Consensus 147 al~~~-~~~~~~~~L~~Ti~LG~~Fl~~Q~~Ey~~---~~ft~~d~vygS~Ff~~TGfHG~HVi~G~~~l~~~~~r~~~~ 222 (258)
T pfam00510 147 SLISG-NRKGALQGLFLTILLAVYFTGLQAYEYYE---APFTISDGVYGSTFFMATGFHGLHVIIGTIFLLVCLLRLLNY 222 (258)
T ss_pred HHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99825-79999999999999999999889999995---788875451888999999899989999999999999999738
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99830426799998999999999999999999982
Q gi|254780472|r 174 GLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 174 ~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++++++.++|++++||||||+||+++|+++|+||
T Consensus 223 ~~~~~~~~~~e~~~~YWHFVDvVWlflf~~~Y~WG 257 (258)
T pfam00510 223 HFTSNHHFGFEAAIWYWHFVDVVWLFLYVSIYWWG 257 (258)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 99966025789999888875867823643412737
No 12
>cd02865 Heme_Cu_Oxidase_III_2 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=100.00 E-value=0 Score=321.83 Aligned_cols=181 Identities=20% Similarity=0.347 Sum_probs=167.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20256602688899999999999999999994278888886600002403578999999999999999999963333688
Q gi|254780472|r 24 CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHK 103 (210)
Q Consensus 24 ~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~ 103 (210)
...+..+++|||+||+||+|+|++++++|+++|...+.+|+ .+.++++.+.+||.+|++||+++++|+++.++ +++++
T Consensus 3 ~g~~spg~~G~w~fi~se~~~F~~l~~~y~~~~~~~~~~~~-~~~~~~~~~~~nT~~Ll~SS~~~~~A~~a~~~-~~~~~ 80 (184)
T cd02865 3 AGARSPGWWGLWVFMAVEGTLFALLISAYFMRMTSGDWQPG-APLPLPNLLSLNTAVLAASSVAMQWARRAARR-NRRVL 80 (184)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHH
T ss_conf 89899958999999999999999999999999974886777-65554018999999999999999999999994-98999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 77655899999999988999987554311100147860167999989979999999999999999997079983042679
Q gi|254780472|r 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRL 183 (210)
Q Consensus 104 ~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~ 183 (210)
+++++..|+++|++|+.+|..||++++++|.++++|+|+|.||++||+|++||++|++++.++..|..+++++++++.++
T Consensus 81 ~~~~L~~t~~LG~~Fl~~q~~E~~~l~~~g~~~~~~~~~s~fy~lTg~H~lHV~~Gli~l~~~~~~~~~~~~~~~~~~~~ 160 (184)
T cd02865 81 ARLGLALAGALALAFLAGQLLAWHALNDAGYGPTSNPAGSFFYLLTGLHGLHVIGGLVALAIVLAGLIRGHYGPRRRLPV 160 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999999999999999999999975887544038999999999999999999999999999998379983467889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999999
Q gi|254780472|r 184 ICLSMFWHFLDLIWICVFSFVYL 206 (210)
Q Consensus 184 ~~~~~YWHFVdivWi~lf~llYl 206 (210)
|.+++||||||++|+++|+++|+
T Consensus 161 e~~~~YWHFvd~vWi~lf~~lYl 183 (184)
T cd02865 161 ELCALYWHFLLLVWLVLLALLYG 183 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999983
No 13
>MTH00009 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=0 Score=325.03 Aligned_cols=184 Identities=23% Similarity=0.466 Sum_probs=162.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6572025660268889999999999999999999427888-----8886-600002-40357899999999999999999
Q gi|254780472|r 21 KESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTIVLLLSSLSCSFAML 93 (210)
Q Consensus 21 ~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~iLl~SS~~~~~a~~ 93 (210)
+|+...+.+-|+||.+||+||+|+|.++|++|+..+.... .||| +.++.+ ..+|++||.+|++||.++++|++
T Consensus 68 ~ht~~v~~g~~~Gm~lFI~SEvmfF~sfFwaff~~~l~p~~elg~~WPP~gi~~~~p~~lPllNT~iLlsSg~tvt~Ah~ 147 (259)
T MTH00009 68 HHTSYVTKGLRWGMILFIASEVMFFFAFFWAFFHSSLAPTPELGCSWPPTGIQPLNPFSVPLLNTAVLLASGVTVTWAHH 147 (259)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 79788864625889999999999999999997876436653328616999842798442409999999836889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99633336887765589999999998899998755431110014786016799998997999999999999999999707
Q gi|254780472|r 94 ASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKK 173 (210)
Q Consensus 94 a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~ 173 (210)
+.+++ ++++++.++..|+++|..|+.+|..||.+ .+++++|++|||.||++||+||+||++|.++|.++.+|..++
T Consensus 148 al~~g-~~~~~~~~L~~Ti~LG~~F~~~Q~~EY~~---~~ft~~d~vygS~Ff~~TGfHG~HViiG~~~l~~~~~r~~~~ 223 (259)
T MTH00009 148 SLIEG-DRTNATQALILTVLLGAYFTFLQAGEYIE---APFTIADSVYGSTFFVATGFHGLHVLIGSSFLFICLLRTWSH 223 (259)
T ss_pred HHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99948-69999999999999999999999999994---776144650575999887688989999999999999999707
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99830426799998999999999999999999982
Q gi|254780472|r 174 GLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 174 ~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++++++.++|++++||||||+||+++|.++|+||
T Consensus 224 ~~~~~~h~~~e~~~~YWHFVDvVWlflf~~iYwWG 258 (259)
T MTH00009 224 HFSAGHHFGFEAAAWYWHFVDVVWIFLYLCIYWWG 258 (259)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 89965017899999998774766701532333747
No 14
>MTH00039 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=0 Score=327.62 Aligned_cols=184 Identities=22% Similarity=0.453 Sum_probs=162.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6572025660268889999999999999999999427888-----8886-600002-40357899999999999999999
Q gi|254780472|r 21 KESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTIVLLLSSLSCSFAML 93 (210)
Q Consensus 21 ~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~iLl~SS~~~~~a~~ 93 (210)
+|+...+++-|+||.+||+||+|+|+++|++|+..+.... .||| +..+.+ ...|++||.+|++||.|+++|++
T Consensus 69 ~ht~~v~~gl~~Gm~lFI~SEvmfF~sfFwa~f~~~l~p~~~~G~~WPP~gi~~~~~~~iPllNT~iLl~Sg~tvt~ah~ 148 (260)
T MTH00039 69 SHTLSVGTGLRYGMILFITSEVCFFFAFFWAFFHSSLAPTVELGVSWPPTGITPINPFLVPLLNTAVLLSSGVTITWSHH 148 (260)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 79789986743775999999999999999997531038855317423999987888100178989999702799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99633336887765589999999998899998755431110014786016799998997999999999999999999707
Q gi|254780472|r 94 ASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKK 173 (210)
Q Consensus 94 a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~ 173 (210)
+.+++ ++++++.+|..|+++|..|+.+|.+||.+ .+++++|++|||.||++||+||+||++|+++|.++.+|..++
T Consensus 149 al~~~-~~~~~~~~L~~Ti~LG~~F~~~Q~~EY~~---a~ft~~d~iygS~Ff~~TGfHG~HVivG~~~l~~~~~r~~~~ 224 (260)
T MTH00039 149 SILEG-NRTEAIQALFLTVLLGIYFTILQAWEYYD---APFTIADSVYGSTFFVATGFHGLHVIIGTTFLLVCLIRLIGY 224 (260)
T ss_pred HHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99955-79889999999999999999989999971---876653357774899887688989999999999999999638
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99830426799998999999999999999999982
Q gi|254780472|r 174 GLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 174 ~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++++++.+.|++++||||||+||+++|.++|+||
T Consensus 225 ~~~~~~h~~~e~~~wYWHFVDvVWlflf~~iYwWG 259 (260)
T MTH00039 225 HFSNNHHFGFEAAAWYWHFVDVVWLFLYICIYWWG 259 (260)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHEHHHHHEEEEC
T ss_conf 99843218999999997650522430532332747
No 15
>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=324.63 Aligned_cols=184 Identities=22% Similarity=0.446 Sum_probs=162.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6572025660268889999999999999999999427888-----8886-600002-40357899999999999999999
Q gi|254780472|r 21 KESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTIVLLLSSLSCSFAML 93 (210)
Q Consensus 21 ~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~iLl~SS~~~~~a~~ 93 (210)
+|+...+++-|+||.+||+||+|+|.++|++|+..+.... .||| +.++.+ ..+|++||++|++||.++++|++
T Consensus 71 ~ht~~v~~gl~~Gm~lFI~SEvmfF~sfFWa~f~~~l~p~~e~g~~WPP~gi~~~~p~~iPllNT~iLlsSg~t~t~Ah~ 150 (262)
T MTH00052 71 HHTLIVKQGLKYGMILFIVSEVCLFFSFFWAFFHSSLAPTIEIGAVWPPRGVDPLNPFSVPLLNTAVLLSSGATVTWAHH 150 (262)
T ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 79677750524674999999999999999987621358861024658999867898110268999999800011699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99633336887765589999999998899998755431110014786016799998997999999999999999999707
Q gi|254780472|r 94 ASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKK 173 (210)
Q Consensus 94 a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~ 173 (210)
+.+++ +++.++.++..|+++|..|+.+|..||.+ .+++++|++|||.||++||+||+||++|+++|.++.+|..++
T Consensus 151 al~~~-~~~~~~~~l~~Ti~LG~~F~~~Q~~EY~~---~~ft~~d~vygS~Ff~~TGfHG~HVi~G~~~l~~~~~r~~~~ 226 (262)
T MTH00052 151 GIISG-KRKEAIRGLALTVALGLLFTGLQAMEYYE---APFTISDSVYGSTFFVTTGAHGGHVLIGSTFLLVCLYRLINY 226 (262)
T ss_pred HHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99966-78889999999999999999999999996---566553126887999999999999999999999999999727
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99830426799998999999999999999999982
Q gi|254780472|r 174 GLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 174 ~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++++++.++|++++||||||+||+++|.++|+||
T Consensus 227 ~~~~~~h~~~e~a~~YWHFVDvVWlflf~~vYwWG 261 (262)
T MTH00052 227 QFTRHHHFGFEAAAWYWHFVDVVWLFLFIFMYWWG 261 (262)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 89976107999999998874766723552422747
No 16
>cd01665 Cyt_c_Oxidase_III Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool."
Probab=100.00 E-value=0 Score=322.01 Aligned_cols=190 Identities=28% Similarity=0.508 Sum_probs=163.5
Q ss_pred EEEECCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCCC-CHHHHHHH
Q ss_conf 465307765-------72025660268889999999999999999999427888-----8886-6000024-03578999
Q gi|254780472|r 14 LFYVKDKKE-------SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFDI-SGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~-------~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~~-~~~~~nT~ 79 (210)
.||++.-+| +...+++-|+||++||+||.|+|+++|++|+..+.... .||| +.++.++ .+|++||.
T Consensus 40 ~W~rdv~~E~~~~g~ht~~v~~~~~~Gm~lFI~SEvmfF~sfFwa~f~~~l~p~~~~g~~WPP~gi~~~~~~~lPllNT~ 119 (243)
T cd01665 40 LWWRDVIRESTFGGHHTKKVQKGLRLGMILFILSEVMFFFSFFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTI 119 (243)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999999852588770888844315359999999999999999999987132020486658999776533465156379
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
+|++||.++++|+++.+++ ++++++.++..|+++|..|+.+|.+||.+ .+++++|++|||.||++||+||+||++|
T Consensus 120 iLLsSs~tvt~Ah~al~~~-~~~~~~~~L~~Ti~LG~~Fl~~Q~~EY~~---~~ft~~d~vygS~Ff~~TGfHg~HVi~G 195 (243)
T cd01665 120 ILLSSGATVTWAHHALLLG-NRKKAILGLILTILLGVYFTGLQAYEYYE---ASFTISDSVYGSTFFMLTGFHGLHVIIG 195 (243)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9997889999999999847-78889999999999999999999999996---6376688718999999981699999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999997079983042679999899999999999999999998
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLM 207 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~ 207 (210)
+++|.++.+|..+++++++++.++|++++||||||+||+++|+++|++
T Consensus 196 ~i~L~v~~~r~~~~~~~~~~~~~~e~a~~YWHFVDvVWlflf~~vY~w 243 (243)
T cd01665 196 TIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHFVDVVWLFLFVFVYWW 243 (243)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999998089982210588999989989898999775286139
No 17
>MTH00024 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=0 Score=323.55 Aligned_cols=184 Identities=26% Similarity=0.510 Sum_probs=162.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6572025660268889999999999999999999427888-----8886-600002-40357899999999999999999
Q gi|254780472|r 21 KESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTIVLLLSSLSCSFAML 93 (210)
Q Consensus 21 ~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~iLl~SS~~~~~a~~ 93 (210)
+|+...+++-|+||.+||+||+|+|.++|++|+..+.... .||| +.++.+ ..+|++||.+|++||.++++|++
T Consensus 70 ~ht~~v~~gl~~Gm~lFI~SEvmfF~sfFWa~f~~~l~p~~e~g~~WPP~gi~~~~~~~lPllNT~iLlsSg~tvt~Ah~ 149 (261)
T MTH00024 70 HHSLIVKQGIKYGMLLFILSEVLFFFSFFWAFFHSSLAPAVELGVVWPPQGVNPLNPFSVPLLNTAVLLSSGATVTWAHH 149 (261)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 78788852643573999999999999999999845236640005778998926798010508889999845459999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99633336887765589999999998899998755431110014786016799998997999999999999999999707
Q gi|254780472|r 94 ASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKK 173 (210)
Q Consensus 94 a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~ 173 (210)
+.+++ ++++++.++..|+++|..|+.+|..||.+ .+++++|++|||.||++||+||+||++|+++|.++.+|..++
T Consensus 150 a~~~~-n~~~~~~~l~~Ti~LG~~F~~~Q~~EY~~---~~ft~~d~vyGS~Ff~~TGfHG~HViiG~~~L~~~~~r~~~~ 225 (261)
T MTH00024 150 AIISG-KKKEAILGLFLTVFLGVLFTGLQAIEYYE---APFAISDSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSN 225 (261)
T ss_pred HHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99955-69999999999999999999999999996---443000448998999998889989999999999999999727
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99830426799998999999999999999999982
Q gi|254780472|r 174 GLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 174 ~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++++++.++|++++||||||+||+++|.++|+||
T Consensus 226 ~~~~~~h~~~e~a~~YWHFVDvVWlflf~~vY~WG 260 (261)
T MTH00024 226 QFTRRQHVGFEAASWYWHFVDVVWLFLYLCIYWWG 260 (261)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 99966015789999888773767823633412737
No 18
>MTH00141 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=321.65 Aligned_cols=183 Identities=24% Similarity=0.453 Sum_probs=160.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 572025660268889999999999999999999427888-----8886-6000024-03578999999999999999999
Q gi|254780472|r 22 ESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFDI-SGIFVSTIVLLLSSLSCSFAMLA 94 (210)
Q Consensus 22 ~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~~-~~~~~nT~iLl~SS~~~~~a~~a 94 (210)
|.....++-|+||++||+||+|+|.++|++|+..+.... .||| +.++.++ .++++||.+|++||.++++|+++
T Consensus 69 ht~~v~~~~k~Gm~lFI~SEvmfF~sfFWa~f~~~l~p~~e~g~~WPP~gi~~~~~~~iPllnT~iLl~S~~t~~~a~~~ 148 (259)
T MTH00141 69 HTRKVSKGLRMGMILFIVSEVCFFFAFFWAYFHSSLAPSVEIGACWPPIGIHTLNPFQVPLLNTALLLASGVSVTWAHHS 148 (259)
T ss_pred CCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86888637603569999999999999999836755475511085579998778880005088899998388999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 96333368877655899999999988999987554311100147860167999989979999999999999999997079
Q gi|254780472|r 95 SATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKG 174 (210)
Q Consensus 95 ~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~ 174 (210)
.+++ ++++++.+|..|+++|.+|+.+|..||.+ .+++++||+|||.||++||+||+||++|+++|.++.+|..+++
T Consensus 149 ~~~~-~~~~~~~~L~~Ti~LG~~F~~~Q~~Ey~~---~~ft~~d~vygS~Ff~~TGfHG~HVi~G~~~l~~~~~r~~~~~ 224 (259)
T MTH00141 149 LMEG-DYKGALQGLGLTIILGVYFTLLQYGEYYE---TSFSIADSVYGSTFFVATGFHGLHVIVGSTFLFVCLVRILLGH 224 (259)
T ss_pred HHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9958-89999999999999999999999999995---8577668850327888776899999999999999999997279
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9830426799998999999999999999999982
Q gi|254780472|r 175 LISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 175 ~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
++++++.++|++++||||||+||+++|.++|+||
T Consensus 225 ~~~~~~~~~e~~~~YWHFVDvVWlflf~~~Y~WG 258 (259)
T MTH00141 225 FSSNHHFGFEAAAWYWHFVDVVWLFLYTSIYWWG 258 (259)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 9966115899999998885878864542323746
No 19
>cd02864 Heme_Cu_Oxidase_III_1 Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the in
Probab=100.00 E-value=0 Score=318.30 Aligned_cols=183 Identities=27% Similarity=0.503 Sum_probs=156.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHC-------CCC--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20256602688899999999999999999994278888886-60000-------240--357899999999999999999
Q gi|254780472|r 24 CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPA-PIDVF-------DIS--GIFVSTIVLLLSSLSCSFAML 93 (210)
Q Consensus 24 ~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~-~~~~~-------~~~--~~~~nT~iLl~SS~~~~~a~~ 93 (210)
+.+...+|+|||+||+||+|+|+++|++|++.|.+.+++++ +.+.. ++| .+.+||.+|++||.++++|++
T Consensus 3 ~~~~~~gklgmWiFi~SE~m~F~~lf~ay~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~T~vLl~SS~t~~~A~~ 82 (202)
T cd02864 3 PFKVSWGKAMMWFFLLSDAFIFSSFLIAYMTARISTTEPWPLPSDVFALRIGHFNIPLVLIAIMTFILITSSGTMAMAVN 82 (202)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88799947999999999999999999999999971577788742125777443322289999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996333368877655899999999988999987554311------10014786016799998997999999999999999
Q gi|254780472|r 94 ASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISM------EAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLV 167 (210)
Q Consensus 94 a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~------g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~ 167 (210)
+.++ +++++.+.|+..|+++|++|+.+|..||.+++.+ +.+++++.|+|.||++||+|++||++|++.+.++.
T Consensus 83 a~~~-~~~~~~~~~L~~T~~LG~~Fl~~q~~E~~~l~~~~~~~~~~~~~~~~~f~s~fy~lTG~HglHV~~Gli~l~~~~ 161 (202)
T cd02864 83 FGYR-GNRKAAARLMLATALLGATFVGMQAFEWTKLIVEEGVRPWGNPWGAAQFGASFFMITGFHGTHVTIGVIYLIIIA 161 (202)
T ss_pred HHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9995-889999999999999999999999999999986045565677765206898999999899999999999999999
Q ss_pred HHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99970799830-42679999899999999999999999998
Q gi|254780472|r 168 IQILKKGLISG-NQRRLICLSMFWHFLDLIWICVFSFVYLM 207 (210)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~YWHFVdivWi~lf~llYl~ 207 (210)
+|..+++++++ +...+|.+++||||||+||+++|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~e~~~~YWHFVDvvWi~lF~~lYlw 202 (202)
T cd02864 162 RKVWRGKYQRIGRYEIVEIAGLYWHFVDLVWVFIFAFFYLW 202 (202)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99970788975404999999999999999999898899819
No 20
>MTH00083 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=318.19 Aligned_cols=184 Identities=22% Similarity=0.422 Sum_probs=160.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76572025660268889999999999999999999427888-----8886-6000024-035789999999999999999
Q gi|254780472|r 20 KKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFDI-SGIFVSTIVLLLSSLSCSFAM 92 (210)
Q Consensus 20 ~~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~~-~~~~~nT~iLl~SS~~~~~a~ 92 (210)
.+|+...+++-|+||++||+||+|+|.++|++|+..+.... .||| +.+.+++ ..+++||.+|++||.++++|+
T Consensus 65 G~ht~~v~~glk~GmilFI~SEvmfF~sfFWaffh~~l~p~~~~g~~WPP~gI~~~~p~~lPLlNT~iLlsSg~tvt~ah 144 (256)
T MTH00083 65 GYHNFFVMDGFKFGMILFIFSEFMFFFSIFWTFFDFALVPSHELGGVWSPIGIHLVNYLGVPLLNTLILLSSGVSLTWSH 144 (256)
T ss_pred CCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99886888264588999999999999999999999980563854982799998889956260552499982899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99963333688776558999999999889999875543111001478601679999899799999999999999999970
Q gi|254780472|r 93 LASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILK 172 (210)
Q Consensus 93 ~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~ 172 (210)
++..++| +++..+|..|+++|..|+.+|..||.+ .+++++|++|||.||++||+||+||++|+++|.++..|..+
T Consensus 145 ~~l~~~~--~~~~~~L~~Ti~LG~~F~~~Q~~EY~~---~~ft~~dsvyGS~Ff~~TGfHG~HVi~G~~~l~~~~~r~~~ 219 (256)
T MTH00083 145 NYLLLNN--KSCENSLLLTIFLGLYFTGFQLMEYSE---ASFSISDSIYGSIFYLGTGFHGFHVLCGSLFLLFNFFRLLL 219 (256)
T ss_pred HHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9998385--889999999999999999999999983---86422167314799999988898999999999999999961
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799830426799998999999999999999999982
Q gi|254780472|r 173 KGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
++++++++.+.|++++||||||+||+++|.++|+||
T Consensus 220 ~~~s~~~~~~~e~a~~YWHFVDvVWlflf~~iYwWg 255 (256)
T MTH00083 220 SHFNYNHHLGLEMAIWYWHFVDVVWLFLFVFVYWWS 255 (256)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC
T ss_conf 799953108999999998875666700513211526
No 21
>cd00386 Heme_Cu_Oxidase_III_like Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex
Probab=100.00 E-value=0 Score=314.06 Aligned_cols=181 Identities=32% Similarity=0.639 Sum_probs=166.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72025660268889999999999999999999427888888-66000024035789999999999999999999633336
Q gi|254780472|r 23 SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGP-APIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLI 101 (210)
Q Consensus 23 ~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~-~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~ 101 (210)
...+++.+|+|||+||+||+|+|++++++|++.|...++++ ++.+.++++.+.+||.+|++||+++++|.++.++ +++
T Consensus 2 ~~~~~~~~~~g~w~fi~sE~~~F~~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~~~T~~L~~Ss~~~~~a~~~~~~-~~~ 80 (183)
T cd00386 2 TASVRSGGRLGMWLFILSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLLSGSSVTWAHASLAARR-GNR 80 (183)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH
T ss_conf 8477428589999999999999999999999999817864311011320038999999999999999999999984-888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 88776558999999999889999875543111001478601679999899799999999999999999970799830426
Q gi|254780472|r 102 HKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQR 181 (210)
Q Consensus 102 ~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~ 181 (210)
++.+.++..|+++|.+|+..|.+||.++ +.++++|+|+|.||++||+|++||++|++.+.++.++..+++.+++++.
T Consensus 81 ~~~~~~L~~t~~LG~~Fl~~q~~E~~~l---~~~~~~~~~~s~f~~ltglH~~HVi~Gl~~l~~~~~~~~~~~~~~~~~~ 157 (183)
T cd00386 81 KKARLWLLLTILLGLAFLGLQAYEYSHL---IFTISDSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHL 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 8899999999999999999999999983---4666567406599999999999999999999999999981789921445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999899999999999999999998
Q gi|254780472|r 182 RLICLSMFWHFLDLIWICVFSFVYLM 207 (210)
Q Consensus 182 ~~~~~~~YWHFVdivWi~lf~llYl~ 207 (210)
++|.+++||||||+||+++|+++|++
T Consensus 158 ~~~~~~~YWHFVD~vWi~lf~~lYl~ 183 (183)
T cd00386 158 GLEAAALYWHFVDVVWLFLFPLVYLW 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78999879999999999999999949
No 22
>MTH00028 COX3 cytochrome c oxidase subunit III; Provisional
Probab=100.00 E-value=0 Score=315.68 Aligned_cols=192 Identities=27% Similarity=0.507 Sum_probs=163.2
Q ss_pred EEEECCCCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCCC-CHHHHHHH
Q ss_conf 4653077657-------2025660268889999999999999999999427888-----8886-6000024-03578999
Q gi|254780472|r 14 LFYVKDKKES-------CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFDI-SGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~-------~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~~-~~~~~nT~ 79 (210)
.||++.-+|+ ...+.+-|+||.+||+||+|+|+++|++|+..+.... .||| +.+.+++ ..+++||.
T Consensus 56 ~WwrDVi~Es~~~G~hT~~V~~glr~GM~lFI~SEVmFF~sfFwAff~~~l~p~~elG~~WPP~Gi~~~~p~~iPllNT~ 135 (297)
T MTH00028 56 AWWRDVIREGTHQGHHTQIVVRGLKLGMLLFILSEVCLFFAFFWAFFHSSLAPSVELGSVWPPKGIEALDPFAVPLLNTT 135 (297)
T ss_pred HHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 99999999970486786788657605679999999999999999987410363287578589989518985657754434
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333-----------------------------------3688776558999999999889999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKR-----------------------------------LIHKTVSWLLVTAFFGMIFIIMEIY 124 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~-----------------------------------~~~~~~~~L~~t~~lG~~Fl~~Q~~ 124 (210)
+|++|+.++++|+++...++ .++++..+|..|+++|..|+.+|..
T Consensus 136 iLLsSG~tvTwah~al~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~L~~Ti~LG~~F~~~Q~~ 215 (297)
T MTH00028 136 ILLSSGATVTWAHHAIIGTGNPASLEKGTQGIEGPNPSNGAPPDPQKGPTFLLSDFRTNAVIGLLMTILLGIIFTGLQAF 215 (297)
T ss_pred EEECCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 33047761334668887076310001232110123432221000012256654404889999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87554311100147860167999989979999999999999999997079983042679999899999999999999999
Q gi|254780472|r 125 EFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFV 204 (210)
Q Consensus 125 E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~ll 204 (210)
||.+ .+++++|++|||.||++||+||+||++|.++|.++.+|..+++++++++.++|++++||||||+||+++|.++
T Consensus 216 EY~~---~~f~~~d~vygS~Ff~~TGfHG~HVi~G~~~l~~~~~r~~~~~~~~~~h~~~e~~~~YWHFVDvVWlflf~~v 292 (297)
T MTH00028 216 EYKE---ASFAISDSVYGSTFFMLTGTHGLHVLVGTTFLIVCFIRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFV 292 (297)
T ss_pred HHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 9961---8763126620138998753568899999999999999997179995402689999988766564561034015
Q ss_pred HHHH
Q ss_conf 9982
Q gi|254780472|r 205 YLMG 208 (210)
Q Consensus 205 Yl~g 208 (210)
|+||
T Consensus 293 YwWG 296 (297)
T MTH00028 293 YWWG 296 (297)
T ss_pred EEEC
T ss_conf 5847
No 23
>TIGR02842 CyoC cytochrome o ubiquinol oxidase, subunit III; InterPro: IPR014206 This entry represents subunit 3 (CyoC) of the cytochrome o terminal oxidase complex, which is a component of the aerobic respiratory chain that reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilise cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant..
Probab=100.00 E-value=0 Score=306.36 Aligned_cols=179 Identities=57% Similarity=1.065 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 26888999999999999999999942788888866000024035789999999999999999999633336887765589
Q gi|254780472|r 31 YLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLV 110 (210)
Q Consensus 31 ~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~ 110 (210)
-+|+|+.++||+.+||++|++|.+.+.+.+.+|++.|..++|...++|.+||.||.|+-.|.-+.+++ ++++...||.+
T Consensus 2 ~fGFW~YLMSDCiLFA~LFAtyaVL~~~~a~GP~g~~lF~L~~V~~ET~lLL~SS~T~G~A~l~~~~~-~~~~v~~WL~i 80 (180)
T TIGR02842 2 VFGFWLYLMSDCILFATLFATYAVLSNNTAGGPSGKELFDLPFVLVETFLLLLSSITFGLAMLAMNKK-NKKKVILWLAI 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHH
T ss_conf 64146799988999999998987860145787864200035669999999998889999999999720-47689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999889999875543111001478601679999899799999999999999999970799830426799998999
Q gi|254780472|r 111 TAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFW 190 (210)
Q Consensus 111 t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~~~~~YW 190 (210)
|.++|+.|+...++|+.||+.+|.+|+.|.|-|.||++.|.||+||..|++++.++.++..+.+.+++++.++...+++|
T Consensus 81 TF~LG~~Fi~mE~~EF~~Li~~G~GP~rSAFLS~FFtLVGTHGlHV~~GLIWi~vmi~q~~~~Gl~~~~~~RL~CLSLFW 160 (180)
T TIGR02842 81 TFLLGLGFIGMEIYEFYHLIAEGNGPDRSAFLSAFFTLVGTHGLHVTSGLIWIIVMIIQVKKYGLTKSNRRRLACLSLFW 160 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
T ss_conf 99999999999999999998648899813789999999998669999999999999999986089998999999861137
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999998209
Q gi|254780472|r 191 HFLDLIWICVFSFVYLMGVV 210 (210)
Q Consensus 191 HFVdivWi~lf~llYl~g~~ 210 (210)
||+|+|||++|+++||.|++
T Consensus 161 HFLDIvWIcVFT~VYL~G~~ 180 (180)
T TIGR02842 161 HFLDIVWICVFTFVYLLGVL 180 (180)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 66653644312188851139
No 24
>MTH00049 COX3 cytochrome c oxidase subunit III; Validated
Probab=100.00 E-value=0 Score=279.75 Aligned_cols=168 Identities=24% Similarity=0.465 Sum_probs=138.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20256602688899999999999999999994278888886600002403578999999999999999999963333688
Q gi|254780472|r 24 CVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHK 103 (210)
Q Consensus 24 ~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~ 103 (210)
...+.+-|.|||+||+||.|+|++++++|+...... ..+. .+ +...|++||.+|++||.|+++|+++...++
T Consensus 47 ~~v~~gl~~Gf~LFI~SEVmfF~s~fw~~f~~~~~p-~~~i-~~--p~~iPLlNT~iLL~Sg~tvT~aHh~l~~~~---- 118 (215)
T MTH00049 47 CTVKHHYESAFWLFILSEVIIFGSLLVCCLWFDDWS-YISL-SS--SLEIPFLGCFLLLGSSITVTGFHHLLGWRY---- 118 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCC-CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 774553589999999999999999999998404588-7754-88--325668899999988789999999887066----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 77655899999999988999987554311100147860167999989979999999999999999997079983042679
Q gi|254780472|r 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRL 183 (210)
Q Consensus 104 ~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~ 183 (210)
++.+|..|+++|..|..+|.+||.+ .+++.+||+|||.||+.||+||+||++|.++|..+..+.. ++.++.+.
T Consensus 119 ~~~~L~~Ti~LG~~F~~lQ~~EY~~---a~FtisdsvyGS~Ff~~TGfHG~HViiG~i~L~~~l~~~~----~~~~~~~~ 191 (215)
T MTH00049 119 SDLFLFLTIVLGLSFVVLQVFEFEE---SSVNSLDSPYYASCFCTVGLHFSHVVLGVVGLSTLLLFGS----SSFGRYRC 191 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCC
T ss_conf 2789999999999999999999986---9877315416789999971668899999999999999806----77888751
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999999
Q gi|254780472|r 184 ICLSMFWHFLDLIWICVFSFVYL 206 (210)
Q Consensus 184 ~~~~~YWHFVdivWi~lf~llYl 206 (210)
|++++||||||+||+++|..+|+
T Consensus 192 e~a~wYWHFVDVVWLflf~~vYi 214 (215)
T MTH00049 192 TVLTWYWHFVDYIWLLVYTVVYV 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEE
T ss_conf 54461455337589858557433
No 25
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III; InterPro: IPR014246 This entry encodes subunit III of the aa3-type quinone oxidase (QoxC), one of several bacterial terminal oxidases . This complex couples oxidation of reduced quinones to the reduction of molecular oxygen to water, and the pumping of protons to form the proton gradient utilised for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms at the active site..
Probab=100.00 E-value=0 Score=265.85 Aligned_cols=184 Identities=38% Similarity=0.787 Sum_probs=173.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 256602688899999999999999999994278-8888866000024035789999999999999999999633336887
Q gi|254780472|r 26 DHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKN-YAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKT 104 (210)
Q Consensus 26 ~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~-~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~~ 104 (210)
|.+--++|+|+|+.+|.++|+++|++|++.+.. ..++++|.+..+++..++.|++|+.||+||-.+....+++| .+..
T Consensus 6 ~g~LN~LGFWIFlgAE~~LFaTLFAtylvl~~~G~~~G~~~a~lFEL~lvLI~T~~LL~SSfTCGi~I~~MR~~~-~K~~ 84 (190)
T TIGR02897 6 QGRLNILGFWIFLGAEIALFATLFATYLVLRKAGDAAGKTPAELFELKLVLIMTFLLLASSFTCGIAIYEMRKEN-QKLM 84 (190)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 233120267899999999999999999998515666778617787689999999999973236668898750120-3568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 76558999999999889999875543111001478601679999899799999999999999999970799830426799
Q gi|254780472|r 105 VSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLI 184 (210)
Q Consensus 105 ~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~ 184 (210)
..|..+|+++|+.|+....+|+.+.+.+|.+++.+.|-|.||++-|-||.||-.|+++...+.++..+++.+|.+..++-
T Consensus 85 ~~w~iiTLlLG~~FvgFEi~EF~~Y~~EGv~~~~gsy~S~FFvLLGTHG~HVt~GI~W~~~~lIQI~~~GL~~~~A~KvF 164 (190)
T TIGR02897 85 LIWSIITLLLGAGFVGFEIYEFAHYVSEGVTIQIGSYWSAFFVLLGTHGLHVTVGIVWAICVLIQIKKRGLTPVTASKVF 164 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 99999999987899999999999998448731277899999998611421568999999999999874078854555224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99899999999999999999998209
Q gi|254780472|r 185 CLSMFWHFLDLIWICVFSFVYLMGVV 210 (210)
Q Consensus 185 ~~~~YWHFVdivWi~lf~llYl~g~~ 210 (210)
..++||||+|+||+++|..+|+.|||
T Consensus 165 I~SLYWHFLDvVWvFIfT~VYl~GMV 190 (190)
T TIGR02897 165 IVSLYWHFLDVVWVFIFTAVYLLGMV 190 (190)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 31147899999999999999975179
No 26
>KOG4664 consensus
Probab=100.00 E-value=9.8e-45 Score=258.00 Aligned_cols=192 Identities=22% Similarity=0.453 Sum_probs=163.8
Q ss_pred EEEECCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CHHHCC-CCHHHHHHH
Q ss_conf 46530776572-------025660268889999999999999999999427888-----8886-600002-403578999
Q gi|254780472|r 14 LFYVKDKKESC-------VDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA-----AGPA-PIDVFD-ISGIFVSTI 79 (210)
Q Consensus 14 ~~~~~~~~~~~-------~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~-----~~~~-~~~~~~-~~~~~~nT~ 79 (210)
+||++...++. ..+|+-+.|+..|++||.++|++++++|+....... .||| +..+++ .+.+++||.
T Consensus 56 lw~rdv~~egt~~g~ht~~v~~gi~~g~ilfV~se~~~f~~~f~~ff~s~l~pt~elg~~wpp~gi~~~~p~evPlLnt~ 135 (261)
T KOG4664 56 LWWRDVGREGTLPGHHTIAVQKGLRVGFILFVLSEVLFFFGIFWAFFHSSLAPTVELGGCWPPTGIEPVNPLEVPLLNTS 135 (261)
T ss_pred HHHHHHHCCCCCCCEEHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99998623673453003575422013354235789999999999997066677601047689751158997678513348
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996333368877655899999999988999987554311100147860167999989979999999
Q gi|254780472|r 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFG 159 (210)
Q Consensus 80 iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~G 159 (210)
+|+.|+.++++|+++..++|++ ++...+.+|+++++.|..+|..||.+ .+++++|++|||.||+-||+|++||++|
T Consensus 136 ILLsSgvtvtwahhsli~~~~~-~~~~~ll~t~ll~vyFt~~Q~~EY~e---apFTIsDgIyGStFfvaTGFHg~Hviig 211 (261)
T KOG4664 136 ILLSSGVTVTWAHHSLIEGNRK-KATSSLLITVLLAVYFTGFQLIEYAE---APFTISDGIYGSTFFVATGFHGFHVIIG 211 (261)
T ss_pred HHHHCCCHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEECCCCEEEEEEEHHHHHHHHHHH
T ss_conf 9984453677999999855344-45321199999999999987988715---7657643643044344011566899998
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999707998304267999989999999999999999999820
Q gi|254780472|r 160 LIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMGV 209 (210)
Q Consensus 160 li~L~~~~~~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g~ 209 (210)
..+|.++.+|..+++++++.+.+.|++++||||||++|+++|+++|++|.
T Consensus 212 ~~fL~ic~iRql~~Hft~~HH~GfEaAa~Ywhfvdvvwlfl~v~~ywwg~ 261 (261)
T KOG4664 212 TLFLPICFIRQLNNHFTKNHHVGFEAAAWYWHFVDVVWLFLYVSIYWWGG 261 (261)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEEECCEEEEEEEEEEEECCC
T ss_conf 79999999999860145455544342210125241465775788975069
No 27
>COG2322 Predicted membrane protein [Function unknown]
Probab=95.42 E-value=0.14 Score=26.49 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68889999999999999999999427888888660000240-35789999999999999999999633336887765589
Q gi|254780472|r 32 LGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDIS-GIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLV 110 (210)
Q Consensus 32 ~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~-~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~ 110 (210)
.+..+.+.+-...+.... .-.|.+|+ .+..+.+ .+-+|++.--.|..+..-+.+..+|+|. ++-++.++.
T Consensus 11 ~~~vl~~a~va~~~~av~-------~~~P~g~~-~~~~~v~i~p~lnai~~~~s~~~llag~~~Ikrg~i-~~Hk~aMlt 81 (177)
T COG2322 11 LAAVLGLASVAVVVIAVL-------AFSPAGPQ-ADAFNVEILPMLNAIFNSLSFIFLLAGWRLIKRGNI-EKHKRAMLT 81 (177)
T ss_pred CHHHHHHHHHHHHHHHHH-------HHCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHH
T ss_conf 078988999999999998-------60789878-776671131159999999999999999999991639-999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999889999875543111001478601679999899799999999999999999970799830426799998999
Q gi|254780472|r 111 TAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFW 190 (210)
Q Consensus 111 t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~~~~~YW 190 (210)
+..+.+.|+++-..- .-+..+......+++-..||.+-..|-.--.+++-.-.+..++..++.++..+. -..-++--|
T Consensus 82 A~~l~l~FlvlYltr-~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~~~~rHrk-i~r~ta~~W 159 (177)
T COG2322 82 AFTLALVFLVLYLTR-HGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYALILAWKGLYERHRK-IGRWTAPLW 159 (177)
T ss_pred HHHHHHHHHHHHHHH-HHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHE-EEEHHHHHH
T ss_conf 999999999999999-825566567887263047999999999999985659999999980543654300-332144999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780472|r 191 HFLDLIWICVFSFVYL 206 (210)
Q Consensus 191 HFVdivWi~lf~llYl 206 (210)
-.|-+-=+.+|..+|.
T Consensus 160 lyva~tGv~VYLmL~~ 175 (177)
T COG2322 160 LYVALTGVVVYLMLYV 175 (177)
T ss_pred HHHHHHHHHHHHEEEC
T ss_conf 9999999987613231
No 28
>pfam04238 DUF420 Protein of unknown function (DUF420). Predicted membrane protein with four transmembrane helices.
Probab=93.47 E-value=0.42 Score=23.95 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf 78999999999999999999963333688776558999999999889999875543111-00147860167999989979
Q gi|254780472|r 75 FVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISME-AVPQRSAFLSSFFALVGLHG 153 (210)
Q Consensus 75 ~~nT~iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g-~~~~~~~~~S~fy~lTG~H~ 153 (210)
.+|+.+--+|..+...+..+.+++| .+.=++.+..+..++.+|+..=.. .+..... -....+..-..||.+-..|-
T Consensus 6 ~lna~ln~~s~~~L~~G~~~Ik~~~-~~~H~~~Ml~A~~~s~lFLv~Yl~--~h~~~g~t~f~G~g~~r~~Y~~iLi~Hi 82 (133)
T pfam04238 6 HLNAVINALTAILLLAGVRFIRRGN-RKKHRRLMLTAFALSALFLVLYLA--YHGLGGSTAFGGPGAVRYVYYFILITHI 82 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 6999999999999999999999387-999999999999999999999999--9971598208888609999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999999999999999707998304
Q gi|254780472|r 154 LHVFFGLIWLFVLVIQILKKGLISGN 179 (210)
Q Consensus 154 lHV~~Gli~L~~~~~~~~~~~~~~~~ 179 (210)
+=-.+.+-...+..++..+++++..+
T Consensus 83 ~LA~v~~plvl~t~~~a~~~~~~~Hr 108 (133)
T pfam04238 83 LLAAIVVPLVLVTLYRALTGQFERHR 108 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999972188746
No 29
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=58.54 E-value=11 Score=16.28 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 6572025660268889999999999999999999427888888660000240357899999999------9999999999
Q gi|254780472|r 21 KESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLS------SLSCSFAMLA 94 (210)
Q Consensus 21 ~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~S------S~~~~~a~~a 94 (210)
+-...|..+-|+..|.+++.... +.. .....+.+ ...+...+....++.+.++.+.. ++..-.....
T Consensus 260 ~~t~~Ekkgl~~Agi~~l~~~al-----~~~-~~iP~~~~-Lr~~~~~~~~~sPf~~siV~~i~~~FlipGlvYG~vtgt 332 (516)
T COG2978 260 ELTALEKKGLKWAGISFLATIAL-----LAA-LVIPENSP-LRDPDGGLVPDSPFMKSIVPFIFLLFLIPGLVYGRVTGT 332 (516)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHH-----HHH-HHCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 15788861447840999999999-----999-98288875-248998807788487739999999999756554102112
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 963333688776558--999999999889999875543111001478601679999899799999999999999
Q gi|254780472|r 95 SATKRLIHKTVSWLL--VTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVL 166 (210)
Q Consensus 95 ~~~~~~~~~~~~~L~--~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~ 166 (210)
.++++|..+...--. ...-+=..|..-|...+-+ ..+.++-..+.|.-+---.|+++.-.++|.+.+...
T Consensus 333 ik~~kDvv~~M~~~m~sMg~yiV~~FfaaQFva~Fn--wSn~G~~~AV~GA~~L~~~gl~g~~lil~~illsa~ 404 (516)
T COG2978 333 IKNDKDVVNMMAESMSSMGGYIVIAFFAAQFVAFFN--WSNLGTIMAVKGADFLKAIGLTGLPLILGFILLSAF 404 (516)
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCHHHEECHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 536178999999999975649999999999999855--056435220202768987589970899999999999
No 30
>PRK02504 NAD(P)H-quinone oxidoreductase subunit 2; Provisional
Probab=21.88 E-value=49 Score=12.87 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999996333368877655899999999988
Q gi|254780472|r 76 VSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFII 120 (210)
Q Consensus 76 ~nT~iLl~SS~~~~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~ 120 (210)
+..++++.+-.++-.+.+..++++.+..-...+.....+|.+++.
T Consensus 84 ~~~ii~~~~~l~~l~S~~y~~~~~~~~~ef~~llL~~~lG~~~l~ 128 (514)
T PRK02504 84 FRAIIALSTLVTLLMSWRYVEQSGTPLGEFAAILLTATLGGMFLC 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999986178650599999999999999999
No 31
>pfam05393 Hum_adeno_E3A Human adenovirus early E3A glycoprotein. This family consists of several early glycoproteins from human adenoviruses.
Probab=21.56 E-value=50 Score=12.83 Aligned_cols=27 Identities=26% Similarity=0.632 Sum_probs=18.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25660268889999999999999999999
Q gi|254780472|r 26 DHDGTYLGFWIYLMSDCLMFAVFFVTYAV 54 (210)
Q Consensus 26 ~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~ 54 (210)
..+=+.+|||.| |..++|..++.-+++
T Consensus 27 vnnwanlgmwwf--sialmfvcliimwli 53 (94)
T pfam05393 27 VNNWANLGMWWF--SIALMFVCLIIMWLI 53 (94)
T ss_pred HHCHHHHCHHHH--HHHHHHHHHHHHHHH
T ss_conf 715243232999--999999999999999
No 32
>pfam11694 DUF3290 Protein of unknown function (DUF3290). This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.55 E-value=50 Score=12.83 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99996333368877655899999999988999987554
Q gi|254780472|r 92 MLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHL 129 (210)
Q Consensus 92 ~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l 129 (210)
.+.. |++...+-|....+.+++-+.+++.|+-+|.+.
T Consensus 35 ~~Y~-r~r~~tKYRDL~II~~L~ll~~~Giq~~~y~~~ 71 (149)
T pfam11694 35 FKYL-RHKFDTKYRDLSIISLLFLLLFIGIQISNYQTN 71 (149)
T ss_pred HHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999-852553278799999999999999769999987
Done!