Query gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs 109 out of 1772
Neff 7.0
Searched_HMMs 33803
Date Wed Jun 1 13:27:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780472.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1m56_C Cytochrome C oxidase; 100.0 0 0 319.1 19.7 185 22-209 1-196 (196)
2 >1fft_C Ubiquinol oxidase; ele 100.0 0 0 333.2 5.2 187 23-210 18-204 (204)
3 >1v54_C Cytochrome C oxidase p 100.0 0 0 317.6 18.6 184 21-208 1-191 (192)
4 >1qle_C Cytochrome C oxidase p 100.0 0 0 317.7 17.1 184 22-208 1-195 (196)
5 >2k1a_A Integrin alpha-IIB; si 8.9 99 0.0029 10.9 2.8 23 156-178 17-39 (42)
6 >1nfd_B N15 alpha-beta T-cell 8.7 1E+02 0.003 10.8 1.1 20 3-22 36-55 (115)
7 >3b9w_A Ammonium transporter f 7.9 1.1E+02 0.0033 10.6 8.8 26 104-129 66-91 (242)
8 >1jb0_I Photosystem 1 reaction 5.9 1.4E+02 0.0042 10.0 2.5 18 105-122 18-35 (38)
9 >2otu_A FV light chain variabl 5.4 1.6E+02 0.0047 9.8 1.0 18 3-20 38-55 (115)
10 >3bru_A Regulatory protein, TE 5.4 1.3E+02 0.0039 10.2 -0.4 14 179-192 58-71 (72)
No 1
>>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} (C:71-266)
Probab=100.00 E-value=0 Score=319.10 Aligned_cols=185 Identities=23% Similarity=0.461 Sum_probs=168.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------HHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 57202566026888999999999999999999942788888866-----------0000240357899999999999999
Q gi|254780472|r 22 ESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAP-----------IDVFDISGIFVSTIVLLLSSLSCSF 90 (210)
Q Consensus 22 ~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~-----------~~~~~~~~~~~nT~iLl~SS~~~~~ 90 (210)
|+..++++.|+|||+|++||.|+|++++++|+++|.+.++++.+ .+..+++.+.+||.+|++||.++..
T Consensus 1 h~~~~~~~~~~g~w~fl~SE~~lF~~~f~ay~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~T~~Ll~Ss~~~~~ 80 (196)
T 1m56_C 1 HTPVVRLGLRWGFILFIMSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCAATW 80 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTBTTTBCCCSSCTTCCCCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85887632468989999999999999999999998287788886537868996534176245488999999833799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999633336887765589999999998899998755431110014786016799998997999999999999999999
Q gi|254780472|r 91 AMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQI 170 (210)
Q Consensus 91 a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~ 170 (210)
|+++.++++.++..+.++..|+++|.+|+.+|.+||.++ +.++++|+|+|+||++||+|++||++|++.+..+..|.
T Consensus 81 a~~a~~~~~~~~~~~~~L~~t~~lg~~Fl~~Q~~E~~~~---~~~~~~~~~~s~fy~lTGlH~lHV~~Gli~l~~~~~~~ 157 (196)
T 1m56_C 81 AHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHA---AFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLIRV 157 (196)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SSCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988612688999999999999999999999998631---36643249998999999999999999999999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 707998304267999989999999999999999999820
Q gi|254780472|r 171 LKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMGV 209 (210)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g~ 209 (210)
.+++++++++.++|.+++||||||+||+++|+++|++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~YWHFVD~vWi~lf~~~Ylwg~ 196 (196)
T 1m56_C 158 QRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIWGQ 196 (196)
T ss_dssp HTCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 827998331289999999998899889988888862279
No 2
>>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} (C:)
Probab=100.00 E-value=0 Score=333.23 Aligned_cols=187 Identities=51% Similarity=0.959 Sum_probs=176.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72025660268889999999999999999999427888888660000240357899999999999999999996333368
Q gi|254780472|r 23 SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIH 102 (210)
Q Consensus 23 ~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~ 102 (210)
+..+.++.++|||+||+||.|+|++++++|++.|.+.+.+|++.+.++++.+.+||.+|++||.++++|+++.++ ++++
T Consensus 18 ~~~~~~~~~~g~~~fi~sE~~~F~~l~~ay~~~~~~~~~~~~~~~~~~~~~~~lnT~iLl~SS~~~~~a~~a~~~-~~~~ 96 (204)
T 1fft_C 18 HHDAGGTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYK-NNKS 96 (204)
T ss_dssp -CCSTTHHHHHHHTTHHHHTTHHHHHHHHHTTTTTTCCCSCCCCCCTTHHHHHHHHHHHGGGTTTTTSGGGTTTT-CCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCHH
T ss_conf 767888764898999999999999999999999974788986100144108999999999899999999999885-8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 87765589999999998899998755431110014786016799998997999999999999999999707998304267
Q gi|254780472|r 103 KTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRR 182 (210)
Q Consensus 103 ~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~ 182 (210)
+++.++..|+++|.+|+.+|.+||.++.++|.++++|+|+|+||++||+|++||++|+++|.++..|..+++++++++.+
T Consensus 97 ~~~~~L~~t~~lG~~Fl~~Q~~Ey~~l~~~g~~~~~~~~gs~fy~lTG~H~~HVi~G~i~L~~~~~r~~~~~~~~~~~~~ 176 (204)
T 1fft_C 97 QVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTR 176 (204)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSCCCCSTTTHHHHHHHHHTTHHHHTTHHHHHHHHHHHHTCCCTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999999999999999999999998762012014999999999999999999999999999999807998432114
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999899999999999999999998209
Q gi|254780472|r 183 LICLSMFWHFLDLIWICVFSFVYLMGVV 210 (210)
Q Consensus 183 ~~~~~~YWHFVdivWi~lf~llYl~g~~ 210 (210)
+|++++||||||+||+++|+++|++|..
T Consensus 177 ve~~~~YWHFvDivWi~lf~~~Yl~g~~ 204 (204)
T 1fft_C 177 IMCLSLFWHFLDVVWICVFTVVYLMGAM 204 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8998889999999999999999986279
No 3
>>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (C:70-261)
Probab=100.00 E-value=0 Score=317.59 Aligned_cols=184 Identities=23% Similarity=0.428 Sum_probs=168.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----C--CCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 657202566026888999999999999999999942788888-----8--660000240357899999999999999999
Q gi|254780472|r 21 KESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAG-----P--APIDVFDISGIFVSTIVLLLSSLSCSFAML 93 (210)
Q Consensus 21 ~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~-----~--~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~ 93 (210)
||+..++++.++|||+||+||+++|++++++|+++|...+++ | .+.+.++++.+++||.+|++||.+++.|++
T Consensus 1 ~h~~~~~~~~~~g~w~fi~sE~~lF~~l~~ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~iLl~SS~~~~~a~~ 80 (192)
T 1v54_C 1 HHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHH 80 (192)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGTSSSSCTTCCCCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77487763206788999999999999999998876607864337868998840364251689999999999979999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99633336887765589999999998899998755431110014786016799998997999999999999999999707
Q gi|254780472|r 94 ASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKK 173 (210)
Q Consensus 94 a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~ 173 (210)
+.++ +++++++.++..|+++|.+|++.|..||.++ +.++++|+|+|+||++||+|++||++|++.+.++.+|..++
T Consensus 81 ~~~~-~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l---~~~~~~~~~~s~fy~ltglH~lHV~~Gl~~l~~~~~~~~~~ 156 (192)
T 1v54_C 81 SLME-GDRKHMLQALFITITLGVYFTLLQASEYYEA---PFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKF 156 (192)
T ss_dssp HHHT-TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---SSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9995-7814389999999999999999999998716---77766788504899999999999999999999999999806
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99830426799998999999999999999999982
Q gi|254780472|r 174 GLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 174 ~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
+.+++++.++|.+++||||||+||+++|+++|++|
T Consensus 157 ~~~~~~~~~~~~~~~YWHFvd~vWi~lf~~~Yl~g 191 (192)
T 1v54_C 157 HFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 191 (192)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89844006899999997578876898888888428
No 4
>>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} (C:78-273)
Probab=100.00 E-value=0 Score=317.70 Aligned_cols=184 Identities=26% Similarity=0.525 Sum_probs=167.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-----------HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 572025660268889999999999999999999427888888660-----------000240357899999999999999
Q gi|254780472|r 22 ESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPI-----------DVFDISGIFVSTIVLLLSSLSCSF 90 (210)
Q Consensus 22 ~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~-----------~~~~~~~~~~nT~iLl~SS~~~~~ 90 (210)
|...++++.|+|||+||+||+++|++++++|++.|.+.++++.+. ...+++.+.+||.+|++||.++..
T Consensus 1 h~~~~~~~~~~G~~~Fi~SE~~lF~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~T~~Ll~SS~~~~~ 80 (196)
T 1qle_C 1 HTPVVRIGLQYGFILFIMSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTW 80 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTTTSCCCSSCTTCCCCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86555232058899999999999999999999885155788874336769998766677155589999999977899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999633336887765589999999998899998755431110014786016799998997999999999999999999
Q gi|254780472|r 91 AMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQI 170 (210)
Q Consensus 91 a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~ 170 (210)
++++.+|+++++.++.++..|+++|++|+..|..||.+ .+.++++|+|+|+||++||+|++||++|++.|.++..|.
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~t~~lG~~Fl~~q~~E~~~---~~~~~~~~~~~s~ff~lTglH~~HV~~Gli~L~~~~~~~ 157 (196)
T 1qle_C 81 AHHAFVLEGDRKTTINGLIVAVILGVCFTGLQAYEYSH---AAFGLADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRL 157 (196)
T ss_dssp HHHHHHHTCCHHHHHHHTHHHHTHHHHHHHHHHHHGGG---CSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999994777768999999999999999999999983---555664056634999999999999999999999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 70799830426799998999999999999999999982
Q gi|254780472|r 171 LKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
++++.+++++.++|.+++||||||+||+++|+++|++|
T Consensus 158 ~~~~~~~~~~~~v~~~~~YWHFVD~vWi~lf~~~Yl~g 195 (196)
T 1qle_C 158 LKGQMTQKQHVGFEAAAWYWHFVDVVWLFLFVVIYIWG 195 (196)
T ss_dssp TTTCCBTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCCT
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 82799966006899999998688875898778787118
No 5
>>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A (A:)
Probab=8.92 E-value=99 Score=10.86 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999999999970799830
Q gi|254780472|r 156 VFFGLIWLFVLVIQILKKGLISG 178 (210)
Q Consensus 156 V~~Gli~L~~~~~~~~~~~~~~~ 178 (210)
+++|++.|..+.+-..+.++..+
T Consensus 17 ~i~GlL~Lali~~~L~K~GFFKR 39 (42)
T 2k1a_A 17 VLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999998273247
No 6
>>1nfd_B N15 alpha-beta T-cell receptor; complex (immunoreceptor/immunoglobulin); HET: NAG NDG; 2.80A {Mus musculus} (B:1-115)
Probab=8.74 E-value=1e+02 Score=10.82 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.3
Q ss_pred HHHCCCCCCCEEEEECCCCC
Q ss_conf 01201698702465307765
Q gi|254780472|r 3 RQKIGKSPNFSLFYVKDKKE 22 (210)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (210)
||+-||.|-|..+...+...
T Consensus 36 rQ~pGkgle~l~~~~~~~~~ 55 (115)
T 1nfd_B 36 QQTLGKELKFLIQHYEKVER 55 (115)
T ss_dssp EBCSSCCCEEEEEEETTTEE
T ss_pred EECCCCCCEEEEEECCCCEE
T ss_conf 98999981999997688605
No 7
>>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transport protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* (A:39-167,A:295-407)
Probab=7.88 E-value=1.1e+02 Score=10.61 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77655899999999988999987554
Q gi|254780472|r 104 TVSWLLVTAFFGMIFIIMEIYEFAHL 129 (210)
Q Consensus 104 ~~~~L~~t~~lG~~Fl~~Q~~E~~~l 129 (210)
...++..++..+.+|.....+-|...
T Consensus 66 ~~q~li~al~~v~vY~~~~~~vw~~G 91 (242)
T 3b9w_A 66 VFQYALLALFIVPVYLLNEWLVLDNA 91 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 89989999999987552221314798
No 8
>>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} (I:)
Probab=5.88 E-value=1.4e+02 Score=10.03 Aligned_cols=18 Identities=39% Similarity=1.006 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 765589999999998899
Q gi|254780472|r 105 VSWLLVTAFFGMIFIIME 122 (210)
Q Consensus 105 ~~~L~~t~~lG~~Fl~~Q 122 (210)
.-||.-+..+|++|+...
T Consensus 18 v~wl~p~vvmgllfiyie 35 (38)
T 1jb0_I 18 VCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp HHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHEEE
T ss_conf 999889999998872420
No 9
>>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A (A:)
Probab=5.36 E-value=1.6e+02 Score=9.77 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=14.2
Q ss_pred HHHCCCCCCCEEEEECCC
Q ss_conf 012016987024653077
Q gi|254780472|r 3 RQKIGKSPNFSLFYVKDK 20 (210)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (210)
|||-||.|-+-+++..+.
T Consensus 38 qQkPG~~p~~li~~~~~~ 55 (115)
T 2otu_A 38 QQQPLKPPKYVMELKKDG 55 (115)
T ss_dssp EECTTSCCEEEEEECTTS
T ss_pred ECCCCCCEECCCEECCCC
T ss_conf 510221000021000123
No 10
>>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} (A:1-72)
Probab=5.36 E-value=1.3e+02 Score=10.21 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 42679999899999
Q gi|254780472|r 179 NQRRLICLSMFWHF 192 (210)
Q Consensus 179 ~~~~~~~~~~YWHF 192 (210)
...++...++|+||
T Consensus 58 ~~agvs~~~iY~~F 71 (72)
T 3bru_A 58 KAARVPKGSFYHYF 71 (72)
T ss_dssp HHHTCCHHHHHHHC
T ss_pred HHHCCCCCCHHHCC
T ss_conf 98688963233257
Done!