HHSEARCH alignment of GI: 254780472 and SCOP domain: d1v54c_

Alignment
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=0  Score=318.18  Aligned_cols=185  Identities=23%  Similarity=0.427  Sum_probs=163.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCC-CHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             765720256602688899999999999999999994278888-----886-6000-024035789999999999999999
Q gi|254780472|r   20 KKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAA-----GPA-PIDV-FDISGIFVSTIVLLLSSLSCSFAM   92 (210)
Q Consensus        20 ~~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~-----~~~-~~~~-~~~~~~~~nT~iLl~SS~~~~~a~   92 (210)
                      .+|+....++.|+|||+||+||+|+|+++|++|+..|...+.     +|| +... .+.+++++||.+|++||.++++|+
T Consensus        67 G~ht~~v~~~~~~G~~lFi~SEv~~F~~~F~ay~~~~~~~~~~~g~~~pp~~i~~~~~~~lpllnT~vLl~Ss~t~~~A~  146 (259)
T d1v54c_          67 GHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAH  146 (259)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGTSSSSCTTCCCCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87528776401899999999999999999999888770786433785899884026425168999999999988999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99963333688776558999999999889999875543111001478601679999899799999999999999999970
Q gi|254780472|r   93 LASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILK  172 (210)
Q Consensus        93 ~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~  172 (210)
                      ++.+++ ++++.+.++..|+++|.+|+.+|..||.+   .+.+++|++|+|.||++||+|++||++|++++.++..|..+
T Consensus       147 ~~~~~~-~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~---~~~~~~~~~~gS~ff~lTG~Hg~HVi~G~i~l~~~~~r~~~  222 (259)
T d1v54c_         147 HSLMEG-DRKHMLQALFITITLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLK  222 (259)
T ss_dssp             HHHHTT-BHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999957-83337899999999999999999988623---67776678851399999999999999999999999999981


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             799830426799998999999999999999999982
Q gi|254780472|r  173 KGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG  208 (210)
Q Consensus       173 ~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g  208 (210)
                      ++++++++.++|.+++||||||+||+++|+++|++|
T Consensus       223 ~~~~~~~~~~~e~~~~YWHFVDvVWi~lf~~vYl~G  258 (259)
T d1v54c_         223 FHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG  258 (259)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             689855115689989788588989999898898428


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit III-like
superfamily: Cytochrome c oxidase subunit III-like
family: Cytochrome c oxidase subunit III-like
domain: Mitochondrial cytochrome c oxidase, subunit III
species: Cow (Bos taurus) [TaxId: 9913]