Query gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs 109 out of 1772
Neff 7.0
Searched_HMMs 13730
Date Wed Jun 1 05:51:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780472.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftc_ f.25.1.1 (C:) Cytochro 100.0 0 0 337.5 5.1 182 26-208 3-184 (185)
2 d1m56c_ f.25.1.1 (C:) Bacteria 100.0 0 0 317.8 20.1 186 20-208 68-264 (265)
3 d1v54c_ f.25.1.1 (C:) Mitochon 100.0 0 0 318.2 19.7 185 20-208 67-258 (259)
4 d1jb0i_ f.23.17.1 (I:) Subunit 8.1 44 0.0032 10.7 2.5 18 105-122 18-35 (38)
5 d1n1ca_ a.184.1.1 (A:) TorA sp 4.3 85 0.0062 9.1 1.4 23 124-146 73-95 (207)
6 d1n4xl_ b.1.1.1 (L:) Immunoglo 4.2 87 0.0064 9.1 0.2 14 3-16 43-56 (113)
7 d1s9ua_ a.184.1.1 (A:) Putativ 3.9 97 0.007 8.8 1.9 23 124-146 73-95 (207)
8 d1xg0b_ d.184.1.1 (B:) Phycoer 3.6 1E+02 0.0076 8.6 0.2 28 4-31 3-30 (67)
9 d2i10a1 a.4.1.9 (A:10-78) Puta 3.6 1.1E+02 0.0078 8.6 0.4 14 179-192 28-41 (69)
10 d1xg0a_ d.184.1.1 (A:) Phycoer 3.2 1.2E+02 0.0087 8.3 0.2 30 4-33 3-32 (76)
No 1
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=337.55 Aligned_cols=182 Identities=53% Similarity=0.990 Sum_probs=172.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25660268889999999999999999999427888888660000240357899999999999999999996333368877
Q gi|254780472|r 26 DHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTV 105 (210)
Q Consensus 26 ~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~iLl~SS~~~~~a~~a~~~~~~~~~~~ 105 (210)
+++++++|||+||+||+|+|+++|++|++.|.+.+.+|++.+..+++.+++||.+|++||+++++|+++.++ +++++++
T Consensus 3 ~~~~~~~G~w~Fi~se~~~F~~lf~~y~~~~~~~~~~~~~~~~~~~~~~~~nT~vLl~SS~~~~~a~~~~~~-~~~~~~~ 81 (185)
T d1fftc_ 3 AGGTKIFGFWIYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYK-NNKSQVI 81 (185)
T ss_dssp STTHHHHHHHTTHHHHTTHHHHHHHHHTTTTTTCCCSCCCCCCTTHHHHHHHHHHHGGGTTTTTSGGGTTTT-CCGGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 998762658999999999999999999999967777876410124239999999999999999999999998-7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 65589999999998899998755431110014786016799998997999999999999999999707998304267999
Q gi|254780472|r 106 SWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLIC 185 (210)
Q Consensus 106 ~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~~~~~~~~~~~~~~ 185 (210)
.++..|+++|.+|+..|..||++++++|.++++|+|+|+||++||+|++||++|+++|.++.+|..+++.+++++.++|.
T Consensus 82 ~~L~~t~~lG~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~fy~lTGlH~lHV~~Gli~L~~~~~r~~~~~~~~~~~~~v~~ 161 (185)
T d1fftc_ 82 SWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMC 161 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSCCCCSTTTHHHHHHHHHTTHHHHTTHHHHHHHHHHHHTCCCTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99999999999999988876999997166643342033399989999999999999999999999807999540068999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999999999982
Q gi|254780472|r 186 LSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 186 ~~~YWHFVdivWi~lf~llYl~g 208 (210)
+++||||||++|+++|+++|++|
T Consensus 162 ~~~YWHFvd~vWi~lf~~lYl~g 184 (185)
T d1fftc_ 162 LSLFWHFLDVVWICVFTVVYLMG 184 (185)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999897049
No 2
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=100.00 E-value=0 Score=317.76 Aligned_cols=186 Identities=23% Similarity=0.442 Sum_probs=162.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCC-CHHH-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 76572025660268889999999999999999999427888---------8886-6000-02403578999999999999
Q gi|254780472|r 20 KKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYA---------AGPA-PIDV-FDISGIFVSTIVLLLSSLSC 88 (210)
Q Consensus 20 ~~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~---------~~~~-~~~~-~~~~~~~~nT~iLl~SS~~~ 88 (210)
..|+....++.|+|||+||+||+|+|+++|++|+..|.... .+|| +... .++..+.+||.+|++||.++
T Consensus 68 G~~t~~v~~~~k~Gm~~Fi~SEvm~F~~~f~~yf~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~l~l~nT~iLl~Ss~~~ 147 (265)
T d1m56c_ 68 GDHTPVVRLGLRWGFILFIMSEVMFFSAWFWSFFKHALYPMGPESPIIDGIFPPEGIITFDPWHLPLINTLILLCSGCAA 147 (265)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTBTTTBCCCSSCTTCCCCCTTTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
T ss_conf 87755531014776499999999999999999999861878888877677779875231661454889989997108999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996333368877655899999999988999987554311100147860167999989979999999999999999
Q gi|254780472|r 89 SFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVI 168 (210)
Q Consensus 89 ~~a~~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~ 168 (210)
++|+++.+++++++..+.++..|+++|..|+..|..||.+ .+.++++|+|+|+||++||+|++||++|+++|.++.+
T Consensus 148 ~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~~---~~~~~~~~~~gs~ff~lTG~Hg~HV~~G~i~l~~~~~ 224 (265)
T d1m56c_ 148 TWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSH---AAFGFAGNIYGANFFMATGFHGFHVIVGTIFLLVCLI 224 (265)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999865205789999999999999999999999985---4788643106779999999999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9970799830426799998999999999999999999982
Q gi|254780472|r 169 QILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
|..+++++++++.++|.+++||||||+||+++|+++|++|
T Consensus 225 ~~~~~~~~~~~~~~~e~~~~YWHFVDvVWi~lf~~~Yl~G 264 (265)
T d1m56c_ 225 RVQRGHFTPEKHVGFEAAIWYWHFVDVVWLFLFASIYIWG 264 (265)
T ss_dssp HHHTCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9972799844018999999999899989998788884228
No 3
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=0 Score=318.18 Aligned_cols=185 Identities=23% Similarity=0.427 Sum_probs=163.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCC-CHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 765720256602688899999999999999999994278888-----886-6000-024035789999999999999999
Q gi|254780472|r 20 KKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAA-----GPA-PIDV-FDISGIFVSTIVLLLSSLSCSFAM 92 (210)
Q Consensus 20 ~~~~~~~~~~~~~G~w~Fi~SE~~~Fa~lf~~y~~~~~~~~~-----~~~-~~~~-~~~~~~~~nT~iLl~SS~~~~~a~ 92 (210)
.+|+....++.|+|||+||+||+|+|+++|++|+..|...+. +|| +... .+.+++++||.+|++||.++++|+
T Consensus 67 G~ht~~v~~~~~~G~~lFi~SEv~~F~~~F~ay~~~~~~~~~~~g~~~pp~~i~~~~~~~lpllnT~vLl~Ss~t~~~A~ 146 (259)
T d1v54c_ 67 GHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAH 146 (259)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGTSSSSCTTCCCCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87528776401899999999999999999999888770786433785899884026425168999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99963333688776558999999999889999875543111001478601679999899799999999999999999970
Q gi|254780472|r 93 LASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILK 172 (210)
Q Consensus 93 ~a~~~~~~~~~~~~~L~~t~~lG~~Fl~~Q~~E~~~l~~~g~~~~~~~~~S~fy~lTG~H~lHV~~Gli~L~~~~~~~~~ 172 (210)
++.+++ ++++.+.++..|+++|.+|+.+|..||.+ .+.+++|++|+|.||++||+|++||++|++++.++..|..+
T Consensus 147 ~~~~~~-~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~---~~~~~~~~~~gS~ff~lTG~Hg~HVi~G~i~l~~~~~r~~~ 222 (259)
T d1v54c_ 147 HSLMEG-DRKHMLQALFITITLGVYFTLLQASEYYE---APFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLK 222 (259)
T ss_dssp HHHHTT-BHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999957-83337899999999999999999988623---67776678851399999999999999999999999999981
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799830426799998999999999999999999982
Q gi|254780472|r 173 KGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 (210)
Q Consensus 173 ~~~~~~~~~~~~~~~~YWHFVdivWi~lf~llYl~g 208 (210)
++++++++.++|.+++||||||+||+++|+++|++|
T Consensus 223 ~~~~~~~~~~~e~~~~YWHFVDvVWi~lf~~vYl~G 258 (259)
T d1v54c_ 223 FHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 258 (259)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 689855115689989788588989999898898428
No 4
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=8.05 E-value=44 Score=10.65 Aligned_cols=18 Identities=39% Similarity=1.006 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 765589999999998899
Q gi|254780472|r 105 VSWLLVTAFFGMIFIIME 122 (210)
Q Consensus 105 ~~~L~~t~~lG~~Fl~~Q 122 (210)
..|+.-+..+|++|+...
T Consensus 18 v~wl~p~vvMglLFiyIE 35 (38)
T d1jb0i_ 18 VCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp HHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHEEEE
T ss_conf 999999999988851631
No 5
>d1n1ca_ a.184.1.1 (A:) TorA specific chaperone TorD {Shewanella massilia [TaxId: 76854]}
Probab=4.31 E-value=85 Score=9.14 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 98755431110014786016799
Q gi|254780472|r 124 YEFAHLISMEAVPQRSAFLSSFF 146 (210)
Q Consensus 124 ~E~~~l~~~g~~~~~~~~~S~fy 146 (210)
.||.+++..+..+...||.|.|-
T Consensus 73 ~ey~~LF~~~~~~~~~pyeS~y~ 95 (207)
T d1n1ca_ 73 ADYCGLFLVGTKHSASPYASLYL 95 (207)
T ss_dssp HHHHHHHTSCC--CCCCBGGGGC
T ss_pred HHHHHHHCCCCCCCCCCEECEEC
T ss_conf 99999838999980698523202
No 6
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}
Probab=4.20 E-value=87 Score=9.06 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=8.6
Q ss_pred HHHCCCCCCCEEEE
Q ss_conf 01201698702465
Q gi|254780472|r 3 RQKIGKSPNFSLFY 16 (210)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (210)
|||.|++|.+-+..
T Consensus 43 rQ~~g~~p~~l~~~ 56 (113)
T d1n4xl_ 43 LQKPGQSPQLLIYK 56 (113)
T ss_dssp EECTTSCCEEEEET
T ss_pred ECCCCCCCEEEEEE
T ss_conf 62889851799990
No 7
>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic dehydrogenases YnfI {Salmonella typhimurium [TaxId: 90371]}
Probab=3.87 E-value=97 Score=8.83 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=15.3
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 98755431110014786016799
Q gi|254780472|r 124 YEFAHLISMEAVPQRSAFLSSFF 146 (210)
Q Consensus 124 ~E~~~l~~~g~~~~~~~~~S~fy 146 (210)
.||.+++..+..+...||.|.|.
T Consensus 73 ~ey~~LF~g~~~~~~~pyeS~y~ 95 (207)
T d1s9ua_ 73 QAWQRLFIGPYALPSPPWGSVWL 95 (207)
T ss_dssp HHHHHHHTCSSCCSSCCBHHHHH
T ss_pred HHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 99999848999986589210346
No 8
>d1xg0b_ d.184.1.1 (B:) Phycoerythrin 545 alpha-subunits {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]}
Probab=3.62 E-value=1e+02 Score=8.63 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCHH
Q ss_conf 1201698702465307765720256602
Q gi|254780472|r 4 QKIGKSPNFSLFYVKDKKESCVDHDGTY 31 (210)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (210)
.|-+++|.++...++--.+...|..|.+
T Consensus 3 dk~~~APvItiFDhRGC~r~~kEYtG~k 30 (67)
T d1xg0b_ 3 DKSAKAPVITIFDHRGCSRAPKEYTGAK 30 (67)
T ss_dssp CSSCEEEEEEEEECTTCSSCCCSCCSCC
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 7567787688852656667660014887
No 9
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=3.57 E-value=1.1e+02 Score=8.59 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 42679999899999
Q gi|254780472|r 179 NQRRLICLSMFWHF 192 (210)
Q Consensus 179 ~~~~~~~~~~YWHF 192 (210)
...++...++|.||
T Consensus 28 ~~agvs~~~~Y~~F 41 (69)
T d2i10a1 28 KALGINPPSLYAAF 41 (69)
T ss_dssp HHHTCCHHHHHHHH
T ss_pred HHHCCCHHHHHHHC
T ss_conf 98687862998888
No 10
>d1xg0a_ d.184.1.1 (A:) Phycoerythrin 545 alpha-subunits {Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]}
Probab=3.24 E-value=1.2e+02 Score=8.32 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCHHHH
Q ss_conf 120169870246530776572025660268
Q gi|254780472|r 4 QKIGKSPNFSLFYVKDKKESCVDHDGTYLG 33 (210)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 33 (210)
.|-+++|.++...++--.+...|..|.+-|
T Consensus 3 dk~~~APvItiFDhRGC~r~~kEytG~kag 32 (76)
T d1xg0a_ 3 DKSAKAPQITIFDHRGCSRAPKESTGGKAG 32 (76)
T ss_dssp CSSCEEEEEEEEECTTCSSCCCCCCSCCCS
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 756778768885266667776012487779
Done!