PSIBLAST alignment of GI: 254780472 and protein with PDB id: 1qle
>gi|6730478|pdb|1QLE|C Chain C, Cryo-Structure Of The Paracoccus Denitrificans Four-Subunit Cytochrome C Oxidase In The Completely Oxidized State Complexed With An Antibody Fv Fragment Length = 273
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 14/201 (6%)
Query: 19 DKKESCVDHDGTYLGFWIYLMSDCLMFAVFFVTYA--VLGKNYA--------AGPAPIDV 68
+ + V G GF +++MS+ + F +F + L P I
Sbjct: 75 TGEHTPVVRIGLQYGFILFIMSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVT 134
Query: 69 FDIS-GIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFA 127
FD ++T++LLLS ++ ++A A + T++ L+V G+ F ++ YE++
Sbjct: 135 FDPWHLPLINTLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGLQAYEYS 194
Query: 128 HLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLS 187
H + + +F+ G HG HV G I+LFV +I++LK + +
Sbjct: 195 H---AAFGLADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAA 251
Query: 188 MFWHFLDLIWICVFSFVYLMG 208
+WHF+D++W+ +F +Y+ G
Sbjct: 252 WYWHFVDVVWLFLFVVIYIWG 272