RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase
subunit III [Candidatus Liberibacter asiaticus str. psy62]
(210 letters)
>gnl|CDD|29487 cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III
subfamily. Ubiquinol oxidase, the terminal oxidase in
the respiratory chains of aerobic bacteria, is a
multi-chain transmembrane protein located in the cell
membrane. It catalyzes the reduction of O2 and
simultaneously pumps protons across the membrane.
Ubiquinol oxidases feature four subunits in contrast to
the 13 subunit bovine cytochrome c oxidase (CcO).
Subunits I, II, and III of bovine CcO are encoded within
the mitochondrial genome and the remaining 10 subunits
are encoded within the nuclear genome. Subunits I, II
and III of ubiquinol oxidase are homologous to the
corresponding subunits in bovine CcO. Although not
required for catalytic activity, subunit III appears to
be involved in assembly of the multimer complex..
Length = 186
Score = 205 bits (524), Expect = 6e-54
Identities = 99/179 (55%), Positives = 127/179 (70%), Gaps = 1/179 (0%)
Query: 30 TYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCS 89
LGFWIYLMSDC++FA F TYAVL N A GP ++F++ +F+ T +LLLSS +C
Sbjct: 9 KILGFWIYLMSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFTCG 68
Query: 90 FAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALV 149
AM+A K + WL++T G+ F+ MEIYEF HLI+ A P RSAFLS+FF LV
Sbjct: 69 LAMIAMNKNNKK-KVILWLIITFLLGLGFVGMEIYEFHHLIAEGAGPDRSAFLSAFFTLV 127
Query: 150 GLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208
G HGLHV FGLIW+ V++IQ+ K+GL RRL CLS+FWHFLD++WI VF+ VYL+G
Sbjct: 128 GTHGLHVTFGLIWILVMIIQLKKRGLTPDTARRLFCLSLFWHFLDIVWIFVFTVVYLLG 186
>gnl|CDD|32030 COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit
3 [Energy production and conversion].
Length = 209
Score = 161 bits (410), Expect = 9e-41
Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 4/186 (2%)
Query: 26 DHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGP-APIDVFDISGIFVSTIVLLLS 84
LGFW++LMS+ +FA F Y V + A P A ++FD+ + ++T +LL S
Sbjct: 27 VGGNGRLGFWVFLMSEVALFASLFAAYFVARASTAGWPPAGTELFDLPLVLINTFILLSS 86
Query: 85 SLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSS 144
S +C A+ A + +WLL+T G F+ ++YE+ HLI+ SAF S+
Sbjct: 87 SFTCGLAVHA-LRRGNRKGARAWLLLTLLLGAAFVGGQLYEYYHLIA--FGLTASAFGSA 143
Query: 145 FFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFV 204
FF L G HGLHV FGLIWL VL+ +I ++GL + N + S++WHF+D++WI +F+ V
Sbjct: 144 FFLLTGFHGLHVTFGLIWLLVLLWRIARRGLTTRNHTGVEAASLYWHFVDVVWIFLFTLV 203
Query: 205 YLMGVV 210
YL G +
Sbjct: 204 YLWGAL 209
>gnl|CDD|29484 cd00386, Heme_Cu_Oxidase_III_like, Heme-copper oxidase subunit III.
Heme-copper oxidases are transmembrane protein
complexes in the respiratory chains of prokaryotes and
mitochondria which couple the reduction of molecular
oxygen to water to, proton pumping across the membrane.
The heme-copper oxidase superfamily is diverse in terms
of electron donors, subunit composition, and heme types.
This superfamily includes cytochrome c and ubiquinol
oxidases. Bacterial oxidases typically contain 3 or 4
subunits in contrast to the 13 subunit bovine cytochrome
c oxidase (CcO). Subunits I, II, and III of mammalian
CcO are encoded within the mitochondrial genome and the
remaining 10 subunits are encoded within the nuclear
genome. Subunits I, II and III of ubiquinol oxidase are
homologous to the corresponding subunits in CcO. This
group additionally contains proteins which are fusions
between subunits I and III, such as Sulfolobus
acidocaldarius SoxM, a subunit of the SoxM terminal
oxidase complex. It also includes NorE which has been
speculated to be a subunit of nitric oxide reductase.
Some archaebacterial cytochrome oxidases lack subunit
III. Although not required for catalytic activity,
subunit III is believed to play a role in assembly of
the multimer complex. Rhodobacter CcO subunit III
stabilizes the integrity of the binuclear center in
subunit I. It has been proposed that archaea acquired
heme-copper oxidases through gene transfer from
gram-positive bacteria..
Length = 183
Score = 118 bits (296), Expect = 2e-27
Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 5/186 (2%)
Query: 23 SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPA-PIDVFDISGIFVSTIVL 81
+ G LG W++++S+ ++F FF Y + +D D+ + +T++L
Sbjct: 2 TASVRSGGRLGMWLFILSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLL 61
Query: 82 LLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAF 141
SS++ + A LA+ K WLL+T G+ F+ ++ YE++HLI S F
Sbjct: 62 SGSSVTWAHASLAARRGN-RKKARLWLLLTILLGLAFLGLQAYEYSHLI---FTISDSVF 117
Query: 142 LSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVF 201
S+FF L G HGLHV GLI+L V++I++ + + L +++WHF+D++W+ +F
Sbjct: 118 GSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHLGLEAAALYWHFVDVVWLFLF 177
Query: 202 SFVYLM 207
VYL
Sbjct: 178 PLVYLW 183
>gnl|CDD|29486 cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase
subunit III. Heme-copper oxidases include cytochrome c
and ubiquinol oxidases. Alcaligenes faecalis norE is
found in a gene cluster containing norCB. norCB encodes
the cytochrome c and cytochrome b subunits of nitric
oxide reductase (NOR). Based on this and on its
similarity to subunit III of cytochrome c oxidase (CcO)
and ubiquinol oxidase, NorE has been speculated to be a
subunit of NOR..
Length = 186
Score = 97.2 bits (242), Expect = 3e-21
Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 8/180 (4%)
Query: 32 LGFWIYLMSDCLMFAVFFVTYAVLGKNY----AAGPAPIDVFDISGIFVSTIVLLLSSLS 87
LG W++++S+ L F F+ YAV Y AAG A +D+ + G ++T+VLL SS +
Sbjct: 11 LGMWVFILSELLAFGALFIAYAVYRALYPELFAAGSAHLDL--LLG-ALNTLVLLTSSFT 67
Query: 88 CSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFA 147
+ A+ A+ R + WL G++F++++ +E+AH I+ P F + +F
Sbjct: 68 VALAVRAARAGRR-RRARRWLAAAVLLGLVFLVIKYFEYAHKIAAGIDPDAGLFFTLYFL 126
Query: 148 LVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLM 207
L G H LHV GL L + + + + + + +++WH +DL+WI +F +YL+
Sbjct: 127 LTGFHLLHVLIGLGILLWVAWRARRGRYSARDYEGVEAAALYWHMVDLVWIVLFPLLYLV 186
>gnl|CDD|29488 cd02864, Heme_Cu_Oxidase_III_1, Heme-copper oxidase subunit III
subfamily. Heme-copper oxidases are transmembrane
protein complexes in the respiratory chains of
prokaryotes and mitochondria which couple the reduction
of molecular oxygen to water to, proton pumping across
the membrane. The heme-copper oxidase superfamily is
diverse in terms of electron donors, subunit
composition, and heme types. This superfamily includes
cytochrome c and ubiquinol oxidases. Bacterial oxidases
typically contain 3 or 4 subunits in contrast to the 13
subunit bovine cytochrome c oxidase (CcO). Subunits I,
II, and III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Subunits I, II and
III of ubiquinol oxidase are homologous to the
corresponding subunits in CcO. Although not required
for catalytic activity, subunit III is believed to play
a role in assembly of the multimer complex. Rhodobacter
CcO subunit III stabilizes the integrity of the
binuclear center in subunit I. It has been proposed
that Archaea acquired heme-copper oxidases through gene
transfer from Gram-positive bacteria..
Length = 202
Score = 81.6 bits (201), Expect = 1e-16
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 18/193 (9%)
Query: 32 LGFWIYLMSDCLMFAVFFVTYA-VLGKNYAAGPAPIDVF-------DISGIFVS--TIVL 81
W +L+SD +F+ F + Y P P DVF +I + ++ T +L
Sbjct: 11 AMMWFFLLSDAFIFSSFLIAYMTARISTTEPWPLPSDVFALRIGHFNIPLVLIAIMTFIL 70
Query: 82 LLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQ---- 137
+ SS + + A + + +L TA G F+ M+ +E+ LI E V
Sbjct: 71 ITSSGTMAMA-VNFGYRGNRKAAARLMLATALLGATFVGMQAFEWTKLIVEEGVRPWGNP 129
Query: 138 --RSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLI-CLSMFWHFLD 194
+ F +SFF + G HG HV G+I+L ++ ++ + + ++ ++WHF+D
Sbjct: 130 WGAAQFGASFFMITGFHGTHVTIGVIYLIIIARKVWRGKYQRIGRYEIVEIAGLYWHFVD 189
Query: 195 LIWICVFSFVYLM 207
L+W+ +F+F YL
Sbjct: 190 LVWVFIFAFFYLW 202
>gnl|CDD|29485 cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III.
Cytochrome c oxidase (CcO), the terminal oxidase in the
respiratory chains of eukaryotes and most bacteria, is a
multi-chain transmembrane protein located in the inner
membrane of mitochondria and the cell membrane of
prokaryotes. CcO catalyzes the reduction of O2 and
simultaneously pumps protons across the membrane. The
number of subunits varies from three to five in bacteria
and up to 13 in mammalian mitochondria. Only subunits I
and II are essential for function, but subunit III,
which is also conserved, is believed to play a role in
assembly of the multimer complex. Rhodobacter CcO
subunit III stabilizes the integrity of the binuclear
center in subunit I. Subunits I, II, and III of
mammalian CcO are encoded within the mitochondrial
genome and the remaining 10 subunits are encoded within
the nuclear genome. Subunit III contains bound
phospholipids in several crystal structures and is
proposed to contain a "lipid pool." These phospholipids
are believed to intrinsic constituents similar to
cofactors of the enzyme..
Length = 243
Score = 75.9 bits (187), Expect = 8e-15
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 28 DGTYLGFWIYLMSDCLMFAVFFVT--YAVLGKNYAAG----PAPIDVFDISGI-FVSTIV 80
G LG ++++S+ + F FF ++ L + G P I+ + GI ++TI+
Sbjct: 61 KGLRLGMILFILSEVMFFFSFFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTII 120
Query: 81 LLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAH-LISMEAVPQRS 139
LL S + ++A A K + L++T G+ F ++ YE+ ++ S
Sbjct: 121 LLSSGATVTWAHHAL-LLGNRKKAILGLILTILLGVYFTGLQAYEYYEASFTISD----S 175
Query: 140 AFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWIC 199
+ S+FF L G HGLHV G I+L V +I++LK S + +WHF+D++W+
Sbjct: 176 VYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHFVDVVWLF 235
Query: 200 VFSFVY 205
+F FVY
Sbjct: 236 LFVFVY 241
>gnl|CDD|177199 MTH00141, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 259
Score = 64.5 bits (158), Expect = 2e-11
Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 17/187 (9%)
Query: 32 LGFWIYLMSDCLMFAVFFVTY--AVLGKNYAAG----PAPIDVFDISGI-FVSTIVLLLS 84
GF ++++S+ F FF Y + L + G P I+ + + ++T VLL S
Sbjct: 79 WGFILFIVSEVCFFFAFFWAYFHSSLAPSVEIGCCWPPVGIEPLNPFQVPLLNTAVLLAS 138
Query: 85 SLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFII---MEIYEFAHLISMEAVPQRSAF 141
++ ++A + + L +T G+ F E YE + I+ +
Sbjct: 139 GVTVTWAHHSLMEGDY-KSALQGLGLTIILGVYFTFLQAGEYYEASFSIA------DGVY 191
Query: 142 LSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVF 201
S+FF L G HGLHV G +L V ++++L + + + +WHF+D++W+ ++
Sbjct: 192 GSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFEAAAWYWHFVDVVWLFLY 251
Query: 202 SFVYLMG 208
+Y G
Sbjct: 252 LSIYWWG 258
>gnl|CDD|29489 cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III
subfamily. Heme-copper oxidases are transmembrane
protein complexes in the respiratory chains of
prokaryotes and mitochondria which couple the reduction
of molecular oxygen to water to, proton pumping across
the membrane. The heme-copper oxidase superfamily is
diverse in terms of electron donors, subunit
composition, and heme types. This superfamily includes
cytochrome c and ubiquinol oxidases. Bacterial oxidases
typically contain 3 or 4 subunits in contrast to the 13
subunit bovine cytochrome c oxidase (CcO). Subunits I,
II, and III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Subunits I, II and
III of ubiquinol oxidase are homologous to the
corresponding subunits in CcO. Although not required
for catalytic activity, subunit III is believed to play
a role in assembly of the multimer complex. Rhodobacter
CcO subunit III stabilizes the integrity of the
binuclear center in subunit I. It has been proposed
that Archaea acquired heme-copper oxidases through gene
transfer from Gram-positive bacteria..
Length = 184
Score = 63.8 bits (155), Expect = 3e-11
Identities = 38/174 (21%), Positives = 81/174 (46%), Gaps = 2/174 (1%)
Query: 32 LGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFA 91
G W+++ + +FA+ Y + + P + + + ++T VL SS++ +A
Sbjct: 11 WGLWVFMAVEGTLFALLISAYFMRMTSGDWQP-GAPLPLPNLLSLNTAVLAASSVAMQWA 69
Query: 92 MLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGL 151
A+ R + L + + F+ ++ + L P + S F+ L GL
Sbjct: 70 RRAARRNRRVL-ARLGLALAGALALAFLAGQLLAWHALNDAGYGPTSNPAGSFFYLLTGL 128
Query: 152 HGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVY 205
HGLHV GL+ L +++ +++ + + +++WHFL L+W+ + + +Y
Sbjct: 129 HGLHVIGGLVALAIVLAGLIRGHYGPRRRLPVELCALYWHFLLLVWLVLLALLY 182
>gnl|CDD|109561 pfam00510, COX3, Cytochrome c oxidase subunit III.
Length = 258
Score = 61.1 bits (149), Expect = 2e-10
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 17/191 (8%)
Query: 28 DGTYLGFWIYLMSDCLMFAVFFVTY--AVLGKNYAAG----PAPIDVFDISGI-FVSTIV 80
G G ++++S+ + F FF + + L G P I + + ++TI+
Sbjct: 74 KGLRYGMILFIVSEVMFFFSFFWAFFHSSLSPTVELGGTWPPVGIHPLNPFEVPLLNTII 133
Query: 81 LLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAH---LISMEAVPQ 137
LL S ++ ++A S + L +T + F ++ YE+ IS
Sbjct: 134 LLSSGVTVTWAH-HSLISGNRKGALQGLFLTILLAVYFTGLQAYEYYEAPFTIS------ 186
Query: 138 RSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIW 197
+ S+FF G HGLHV G I+L V ++++L S + +WHF+D++W
Sbjct: 187 DGVYGSTFFMATGFHGLHVIIGTIFLLVCLLRLLNYHFTSNHHFGFEAAIWYWHFVDVVW 246
Query: 198 ICVFSFVYLMG 208
+ ++ +Y G
Sbjct: 247 LFLYVSIYWWG 257
>gnl|CDD|177107 MTH00028, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 297
Score = 57.4 bits (138), Expect = 3e-09
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 108 LLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLV 167
LL+T G+IF ++ +E+ S + S+FF L G HGLHV G +L V
Sbjct: 199 LLMTILLGIIFTGLQAFEYKE---ASFAISDSVYGSTFFMLTGTHGLHVLVGTTFLIVCF 255
Query: 168 IQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208
I++L + + L +WHF+D++W+ ++ FVY G
Sbjct: 256 IRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFVYWWG 296
>gnl|CDD|177212 MTH00155, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 255
Score = 57.1 bits (139), Expect = 3e-09
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 65 PIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIY 124
P + F I ++TI+LL S ++ ++A + T S L T G+ F +++ Y
Sbjct: 121 PFNPFQI--PLLNTIILLSSGVTVTWAHHSLMENNYKQATQS-LFFTIILGIYFTMLQAY 177
Query: 125 EFAHLISMEA--VPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRR 182
E+ EA S + S+FF G HGLHV G +L V +I+ L S +
Sbjct: 178 EY-----YEAPFTIADSVYGSTFFMATGFHGLHVIIGTTFLLVCLIRHLNNHFSSNHHFG 232
Query: 183 LICLSMFWHFLDLIWICVFSFVY 205
+ +WHF+D++W+ ++ +Y
Sbjct: 233 FEAAAWYWHFVDVVWLFLYISIY 255
>gnl|CDD|39863 KOG4664, KOG4664, KOG4664, Cytochrome oxidase subunit III and
related proteins [Energy production and conversion].
Length = 261
Score = 55.0 bits (132), Expect = 1e-08
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 11/189 (5%)
Query: 28 DGTYLGFWIYLMSDCLMFAVFFVTY--AVLGKNYAAG----PAPIDVFDISGI-FVSTIV 80
G +GF ++++S+ L F F + + L G P I+ + + ++T +
Sbjct: 77 KGLRVGFILFVLSEVLFFFGIFWAFFHSSLAPTVELGGCWPPTGIEPVNPLEVPLLNTSI 136
Query: 81 LLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSA 140
LL S ++ ++A S + K S LL+T + F ++ E+A
Sbjct: 137 LLSSGVTVTWAH-HSLIEGNRKKATSSLLITVLLAVYFTGFQLIEYAEA---PFTISDGI 192
Query: 141 FLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICV 200
+ S+FF G HG HV G ++L + I+ L + + +WHF+D++W+ +
Sbjct: 193 YGSTFFVATGFHGFHVIIGTLFLPICFIRQLNNHFTKNHHVGFEAAAWYWHFVDVVWLFL 252
Query: 201 FSFVYLMGV 209
+ +Y G
Sbjct: 253 YVSIYWWGG 261
>gnl|CDD|164597 MTH00024, COX3, cytochrome c oxidase subunit III; Validated.
Length = 261
Score = 52.4 bits (126), Expect = 8e-08
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 21/192 (10%)
Query: 29 GTYLGFWIYLMSDCLMFAVFFVTY--------AVLGKNYAA-GPAPIDVFDISGIFVSTI 79
G G ++++S+ L F FF + LG + G P++ F + ++T
Sbjct: 78 GLKYGMLLFILSEVLFFFSFFWAFFHSSLAPAVELGVVWPPQGINPLNPFSVP--LLNTA 135
Query: 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFI---IMEIYEFAHLISMEAVP 136
VLL S + ++A A + + + L +T F G++F +E YE IS
Sbjct: 136 VLLSSGATVTWAHHAIISGKRKEAILG-LFLTVFLGVLFTGLQAIEYYEAPFAIS----- 189
Query: 137 QRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLI 196
S + S+FF G HGLHV G +LFV ++++L S +WHF+D++
Sbjct: 190 -DSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSNQFTRRQHVGFEAASWYWHFVDVV 248
Query: 197 WICVFSFVYLMG 208
W+ ++ +Y G
Sbjct: 249 WLFLYLCIYWWG 260
>gnl|CDD|177238 MTH00189, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 260
Score = 52.7 bits (127), Expect = 8e-08
Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 25/196 (12%)
Query: 27 HDGTYLGFWIYLMSDCLMFAVFFVTY--AVLGKNYAAG----PAPIDVFDISGI-FVSTI 79
G G +++ S+ F FF + + L G P I+ + + ++T
Sbjct: 75 QKGLRYGMILFITSEVFFFLGFFWAFFHSSLAPTVELGMCWPPTGIEPLNPFEVPLLNTA 134
Query: 80 VLLLSSLSCSFA----MLASATKRLIHKTVSWLLVTAFFGMIFI---IMEIYEFAHLISM 132
VLL S ++ ++A M + + + L +T G+ F ME YE I+
Sbjct: 135 VLLSSGVTVTWAHHSLMEGNRKE-----AIQALTLTVILGVYFTLLQAMEYYEAPFTIA- 188
Query: 133 EAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHF 192
S + S+FF G HGLHV G +L V +++ ++ S + + +WHF
Sbjct: 189 -----DSVYGSTFFVATGFHGLHVIIGSTFLLVCLLRQIQGHFTSSHHFGFEAAAWYWHF 243
Query: 193 LDLIWICVFSFVYLMG 208
+D++W+ ++ +Y G
Sbjct: 244 VDVVWLFLYVSIYWWG 259
>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 256
Score = 52.3 bits (126), Expect = 1e-07
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 78 TIVLLLSSLSCSFA--MLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAV 135
TI+LL S +S +++ L + K + LL+T F G+ F ++ E+
Sbjct: 130 TIILLSSGVSVTWSHHSLCLSNK----SCTNSLLLTCFLGLYFTSFQLMEYKEA---SFS 182
Query: 136 PQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDL 195
S + S F+ G HG+HV G ++L ++++LK + L ++WHF+D+
Sbjct: 183 ISDSIYGSIFYLGTGFHGIHVLCGGLFLLFNLLRLLKSHFNYNHHLGLEFAILYWHFVDV 242
Query: 196 IWICVFSFVY 205
+W+ +F FVY
Sbjct: 243 VWLFLFVFVY 252
>gnl|CDD|177101 MTH00009, COX3, cytochrome c oxidase subunit III; Validated.
Length = 259
Score = 50.6 bits (121), Expect = 3e-07
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 62 GPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIM 121
G P++ F + ++T VLL S ++ ++A S + + L++T G F +
Sbjct: 118 GIEPLNPFSVP--LLNTAVLLASGVTVTWAH-HSLIEGDRPEATQALILTVLLGAYFTFL 174
Query: 122 EIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQR 181
+ E+ I S + S+FF G HGLHV G +LFV +++ +G+
Sbjct: 175 QAGEY---IEAPFTIADSVYGSTFFVATGFHGLHVLIGSSFLFVCLLRTWSHHFSTGHHF 231
Query: 182 RLICLSMFWHFLDLIWICVFSFVYLMG 208
+ +WHF+D++WI ++ +Y G
Sbjct: 232 GFEAAAWYWHFVDVVWIFLYLCIYWWG 258
>gnl|CDD|177259 MTH00219, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 262
Score = 49.8 bits (119), Expect = 5e-07
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 29 GTYLGFWIYLMSDCLMFAVFFVTY--------AVLGKNYA-AGPAPIDVFDISGIFVSTI 79
G +G ++++S+ L F FF + LG + G P++ F + ++T
Sbjct: 79 GLRIGMILFIVSEILFFFAFFWAFFHSSLAPTIELGSCWPPTGINPLNPFQVP--LLNTA 136
Query: 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFII---MEIYEFAHLISMEAVP 136
VLL S ++ ++A + LL T G+ F + ME E + IS
Sbjct: 137 VLLASGVTVTWAHHSLMESNHKEAQQG-LLFTILLGLYFTMLQGMEYLEASFSIS----- 190
Query: 137 QRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLI 196
S + ++FF G HGLHV G I+LFV ++ L + + +WHF+D++
Sbjct: 191 -DSVYGTTFFVATGFHGLHVIIGTIFLFVCFMRGLMLHFSKNHHFGFEAAAWYWHFVDVV 249
Query: 197 WICVFSFVYLMG 208
W+ ++ +Y G
Sbjct: 250 WLFLYVSIYWWG 261
>gnl|CDD|177114 MTH00039, COX3, cytochrome c oxidase subunit III; Validated.
Length = 260
Score = 48.6 bits (116), Expect = 1e-06
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWL 163
+ L +T G+ F ++ +E+ S + S+FF G HGLHV G +L
Sbjct: 158 AIQALFLTVLLGLYFTALQAWEY---YDAPFTIADSVYGSTFFVATGFHGLHVIIGTTFL 214
Query: 164 FVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208
V + +++ + + + +WHF+D++W+ ++ +Y G
Sbjct: 215 AVCLFRLINHHFSNNHHFGFEAAAWYWHFVDVVWLFLYVCIYWWG 259
>gnl|CDD|164623 MTH00052, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 262
Score = 48.6 bits (116), Expect = 1e-06
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 12/150 (8%)
Query: 62 GPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFI-- 119
G P++ F + ++T VLL S + ++A + + + L +T G++F
Sbjct: 121 GVDPLNPFSVP--LLNTAVLLSSGATVTWAHHGIISGKRKEAIIG-LALTVALGLLFTGL 177
Query: 120 -IMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISG 178
ME YE IS S + S+FF G HG HV G +L V + +++
Sbjct: 178 QAMEYYEAPFTIS------DSVYGSTFFVTTGAHGGHVLIGSSFLLVCLFRLINHQFTRH 231
Query: 179 NQRRLICLSMFWHFLDLIWICVFSFVYLMG 208
+ + +WHF+D++W+ +F F+Y G
Sbjct: 232 HHFGFEAAAWYWHFVDVVWLFLFIFMYWWG 261
>gnl|CDD|177146 MTH00075, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 261
Score = 48.2 bits (115), Expect = 2e-06
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 61 AGPAPIDVFDISGIFVSTIVLLLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMI 117
G P+D F++ ++T VLL S ++ ++A ++ K I L +T G+
Sbjct: 119 TGITPLDPFEVP--LLNTAVLLASGVTVTWAHHSIMQGNRKEAIQS----LALTIILGLY 172
Query: 118 FII---MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKG 174
F + ME YE I+ + S+FF G HGLHV G ++L V +++ +
Sbjct: 173 FTLLQAMEYYEAPFTIA------DGVYGSTFFVATGFHGLHVIIGSLFLLVCLLRQINFH 226
Query: 175 LISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208
S + + +WHF+D++W+ ++ +Y G
Sbjct: 227 FTSQHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
>gnl|CDD|177124 MTH00049, COX3, cytochrome c oxidase subunit III; Validated.
Length = 215
Score = 48.0 bits (115), Expect = 2e-06
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 33 GFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAM 92
FW++++S+ ++F V + +I FV +LL SS++
Sbjct: 56 AFWLFILSEVIIFGSLLVCCLWFDDWSYISLS--SSLEIP--FVGCFLLLGSSIT----- 106
Query: 93 LASATKRLIHKTVSW--LLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVG 150
+A L+ L +T G++F++++++EF S++ +S F VG
Sbjct: 107 -VTAYHHLLGWKYCDLFLYLTILLGLLFVVLQVFEF---EESGVNSLDSSYYASCFCTVG 162
Query: 151 LHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYL 206
LH HV G++ L +L G S R L+ +WHF+D IW+ V+ VY+
Sbjct: 163 LHFSHVVLGVVGL----STLLLVGSSSFGVYRSTVLTWYWHFVDYIWLLVYLIVYV 214
>gnl|CDD|177179 MTH00118, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 261
Score = 46.5 bits (111), Expect = 5e-06
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Query: 62 GPAPIDVFDISGIFVSTIVLLLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMIF 118
G P++ F++ ++T VLL S ++ ++A ++ K+ I L +T G+ F
Sbjct: 120 GIKPLNPFEVP--LLNTAVLLASGVTVTWAHHSIMEGNRKQAIQA----LTLTILLGLYF 173
Query: 119 II---MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGL 175
ME YE IS S + S+FF G HGLHV G +L V +++++K
Sbjct: 174 TALQAMEYYEAPFTIS------DSVYGSTFFVATGFHGLHVIIGSTFLIVCLLRLIKFHF 227
Query: 176 ISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208
+ + + +WHF+D++W+ ++ +Y G
Sbjct: 228 TTNHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260
>gnl|CDD|177161 MTH00099, COX3, cytochrome c oxidase subunit III; Validated.
Length = 261
Score = 46.6 bits (111), Expect = 5e-06
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 78 TIVLLLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMIFI---IMEIYEFAHLIS 131
T VLL S +S ++A ++ K ++ L +T G+ F E YE IS
Sbjct: 134 TSVLLASGVSITWAHHSLMEGNRKHMLQA----LFITILLGLYFTLLQASEYYEAPFTIS 189
Query: 132 MEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWH 191
+ S+FF G HGLHV G +L V ++ LK S + + +WH
Sbjct: 190 ------DGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWH 243
Query: 192 FLDLIWICVFSFVYLMG 208
F+D++W+ ++ +Y G
Sbjct: 244 FVDVVWLFLYVSIYWWG 260
>gnl|CDD|177188 MTH00130, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 261
Score = 45.9 bits (109), Expect = 7e-06
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 61 AGPAPIDVFDISGIFVSTIVLLLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMI 117
G +D F++ ++T VLL S ++ ++A ++ K+ I L +T G
Sbjct: 119 TGITTLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQAIQS----LTLTILLGFY 172
Query: 118 FII---MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKG 174
F ME YE I+ + S+FF G HGLHV G +L V +++ ++
Sbjct: 173 FTFLQAMEYYEAPFTIA------DGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYH 226
Query: 175 LISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208
S + + +WHF+D++W+ ++ +Y G
Sbjct: 227 FTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260
>gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels
(LTRPC family) [Inorganic ion transport and metabolism,
Signal transduction mechanisms].
Length = 1381
Score = 30.7 bits (69), Expect = 0.29
Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 28/111 (25%)
Query: 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWL 163
WL V ++ + + F +++ ++ P S + FA W+
Sbjct: 793 VKFWLNVLSYIAFLLL------FTYVLLVDFQPSPSMWEWILFA--------------WI 832
Query: 164 FVLVIQILKKGLISG----NQRRLICLSMFWHFLDLIWICVFSFVYLMGVV 210
F L ++ +++ IS Q+ + + FW+ +DL+ I ++L+G V
Sbjct: 833 FTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAI----LLFLVGPV 879
>gnl|CDD|39229 KOG4026, KOG4026, KOG4026, Uncharacterized conserved protein
[Function unknown].
Length = 207
Score = 27.6 bits (61), Expect = 2.3
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 69 FDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMI 117
F ++ FV +L+ L A+L + I W+ A MI
Sbjct: 77 FKLAAFFVLLAFVLILLLIVFLALLGCCRSKSIFNMCGWMQGIAGLCMI 125
>gnl|CDD|34270 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 408
Score = 26.0 bits (57), Expect = 7.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 105 VSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGL 151
VS+ L F GM+ + E +H + +++P R AF FF VG+
Sbjct: 248 VSFALGAFFAGMV---LAESELSHRAAEDSLPLRDAFAVLFFVSVGM 291
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.335 0.146 0.465
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,701,072
Number of extensions: 147873
Number of successful extensions: 1031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 199
Length of query: 210
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 120
Effective length of database: 4,318,927
Effective search space: 518271240
Effective search space used: 518271240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (24.9 bits)