RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780472|ref|YP_003064885.1| cytochrome o ubiquinol oxidase subunit III [Candidatus Liberibacter asiaticus str. psy62] (210 letters) >gnl|CDD|29487 cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.. Length = 186 Score = 205 bits (524), Expect = 6e-54 Identities = 99/179 (55%), Positives = 127/179 (70%), Gaps = 1/179 (0%) Query: 30 TYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCS 89 LGFWIYLMSDC++FA F TYAVL N A GP ++F++ +F+ T +LLLSS +C Sbjct: 9 KILGFWIYLMSDCILFATLFATYAVLSGNTAGGPPGHELFELPLVFIETFLLLLSSFTCG 68 Query: 90 FAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALV 149 AM+A K + WL++T G+ F+ MEIYEF HLI+ A P RSAFLS+FF LV Sbjct: 69 LAMIAMNKNNKK-KVILWLIITFLLGLGFVGMEIYEFHHLIAEGAGPDRSAFLSAFFTLV 127 Query: 150 GLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 G HGLHV FGLIW+ V++IQ+ K+GL RRL CLS+FWHFLD++WI VF+ VYL+G Sbjct: 128 GTHGLHVTFGLIWILVMIIQLKKRGLTPDTARRLFCLSLFWHFLDIVWIFVFTVVYLLG 186 >gnl|CDD|32030 COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]. Length = 209 Score = 161 bits (410), Expect = 9e-41 Identities = 73/186 (39%), Positives = 110/186 (59%), Gaps = 4/186 (2%) Query: 26 DHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGP-APIDVFDISGIFVSTIVLLLS 84 LGFW++LMS+ +FA F Y V + A P A ++FD+ + ++T +LL S Sbjct: 27 VGGNGRLGFWVFLMSEVALFASLFAAYFVARASTAGWPPAGTELFDLPLVLINTFILLSS 86 Query: 85 SLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSS 144 S +C A+ A + +WLL+T G F+ ++YE+ HLI+ SAF S+ Sbjct: 87 SFTCGLAVHA-LRRGNRKGARAWLLLTLLLGAAFVGGQLYEYYHLIA--FGLTASAFGSA 143 Query: 145 FFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFV 204 FF L G HGLHV FGLIWL VL+ +I ++GL + N + S++WHF+D++WI +F+ V Sbjct: 144 FFLLTGFHGLHVTFGLIWLLVLLWRIARRGLTTRNHTGVEAASLYWHFVDVVWIFLFTLV 203 Query: 205 YLMGVV 210 YL G + Sbjct: 204 YLWGAL 209 >gnl|CDD|29484 cd00386, Heme_Cu_Oxidase_III_like, Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex. It also includes NorE which has been speculated to be a subunit of nitric oxide reductase. Some archaebacterial cytochrome oxidases lack subunit III. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria.. Length = 183 Score = 118 bits (296), Expect = 2e-27 Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 5/186 (2%) Query: 23 SCVDHDGTYLGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPA-PIDVFDISGIFVSTIVL 81 + G LG W++++S+ ++F FF Y + +D D+ + +T++L Sbjct: 2 TASVRSGGRLGMWLFILSEVMLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNTNTLLL 61 Query: 82 LLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAF 141 SS++ + A LA+ K WLL+T G+ F+ ++ YE++HLI S F Sbjct: 62 SGSSVTWAHASLAARRGN-RKKARLWLLLTILLGLAFLGLQAYEYSHLI---FTISDSVF 117 Query: 142 LSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVF 201 S+FF L G HGLHV GLI+L V++I++ + + L +++WHF+D++W+ +F Sbjct: 118 GSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHLGLEAAALYWHFVDVVWLFLF 177 Query: 202 SFVYLM 207 VYL Sbjct: 178 PLVYLW 183 >gnl|CDD|29486 cd02862, NorE_like, NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.. Length = 186 Score = 97.2 bits (242), Expect = 3e-21 Identities = 55/180 (30%), Positives = 97/180 (53%), Gaps = 8/180 (4%) Query: 32 LGFWIYLMSDCLMFAVFFVTYAVLGKNY----AAGPAPIDVFDISGIFVSTIVLLLSSLS 87 LG W++++S+ L F F+ YAV Y AAG A +D+ + G ++T+VLL SS + Sbjct: 11 LGMWVFILSELLAFGALFIAYAVYRALYPELFAAGSAHLDL--LLG-ALNTLVLLTSSFT 67 Query: 88 CSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFA 147 + A+ A+ R + WL G++F++++ +E+AH I+ P F + +F Sbjct: 68 VALAVRAARAGRR-RRARRWLAAAVLLGLVFLVIKYFEYAHKIAAGIDPDAGLFFTLYFL 126 Query: 148 LVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLM 207 L G H LHV GL L + + + + + + +++WH +DL+WI +F +YL+ Sbjct: 127 LTGFHLLHVLIGLGILLWVAWRARRGRYSARDYEGVEAAALYWHMVDLVWIVLFPLLYLV 186 >gnl|CDD|29488 cd02864, Heme_Cu_Oxidase_III_1, Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.. Length = 202 Score = 81.6 bits (201), Expect = 1e-16 Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 18/193 (9%) Query: 32 LGFWIYLMSDCLMFAVFFVTYA-VLGKNYAAGPAPIDVF-------DISGIFVS--TIVL 81 W +L+SD +F+ F + Y P P DVF +I + ++ T +L Sbjct: 11 AMMWFFLLSDAFIFSSFLIAYMTARISTTEPWPLPSDVFALRIGHFNIPLVLIAIMTFIL 70 Query: 82 LLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQ---- 137 + SS + + A + + +L TA G F+ M+ +E+ LI E V Sbjct: 71 ITSSGTMAMA-VNFGYRGNRKAAARLMLATALLGATFVGMQAFEWTKLIVEEGVRPWGNP 129 Query: 138 --RSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLI-CLSMFWHFLD 194 + F +SFF + G HG HV G+I+L ++ ++ + + ++ ++WHF+D Sbjct: 130 WGAAQFGASFFMITGFHGTHVTIGVIYLIIIARKVWRGKYQRIGRYEIVEIAGLYWHFVD 189 Query: 195 LIWICVFSFVYLM 207 L+W+ +F+F YL Sbjct: 190 LVWVFIFAFFYLW 202 >gnl|CDD|29485 cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.. Length = 243 Score = 75.9 bits (187), Expect = 8e-15 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 13/186 (6%) Query: 28 DGTYLGFWIYLMSDCLMFAVFFVT--YAVLGKNYAAG----PAPIDVFDISGI-FVSTIV 80 G LG ++++S+ + F FF ++ L + G P I+ + GI ++TI+ Sbjct: 61 KGLRLGMILFILSEVMFFFSFFWAFFHSSLSPSVELGGTWPPVGIEPLNPFGIPLLNTII 120 Query: 81 LLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAH-LISMEAVPQRS 139 LL S + ++A A K + L++T G+ F ++ YE+ ++ S Sbjct: 121 LLSSGATVTWAHHAL-LLGNRKKAILGLILTILLGVYFTGLQAYEYYEASFTISD----S 175 Query: 140 AFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWIC 199 + S+FF L G HGLHV G I+L V +I++LK S + +WHF+D++W+ Sbjct: 176 VYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHFVDVVWLF 235 Query: 200 VFSFVY 205 +F FVY Sbjct: 236 LFVFVY 241 >gnl|CDD|177199 MTH00141, COX3, cytochrome c oxidase subunit III; Provisional. Length = 259 Score = 64.5 bits (158), Expect = 2e-11 Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 17/187 (9%) Query: 32 LGFWIYLMSDCLMFAVFFVTY--AVLGKNYAAG----PAPIDVFDISGI-FVSTIVLLLS 84 GF ++++S+ F FF Y + L + G P I+ + + ++T VLL S Sbjct: 79 WGFILFIVSEVCFFFAFFWAYFHSSLAPSVEIGCCWPPVGIEPLNPFQVPLLNTAVLLAS 138 Query: 85 SLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFII---MEIYEFAHLISMEAVPQRSAF 141 ++ ++A + + L +T G+ F E YE + I+ + Sbjct: 139 GVTVTWAHHSLMEGDY-KSALQGLGLTIILGVYFTFLQAGEYYEASFSIA------DGVY 191 Query: 142 LSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVF 201 S+FF L G HGLHV G +L V ++++L + + + +WHF+D++W+ ++ Sbjct: 192 GSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFEAAAWYWHFVDVVWLFLY 251 Query: 202 SFVYLMG 208 +Y G Sbjct: 252 LSIYWWG 258 >gnl|CDD|29489 cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.. Length = 184 Score = 63.8 bits (155), Expect = 3e-11 Identities = 38/174 (21%), Positives = 81/174 (46%), Gaps = 2/174 (1%) Query: 32 LGFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFA 91 G W+++ + +FA+ Y + + P + + + ++T VL SS++ +A Sbjct: 11 WGLWVFMAVEGTLFALLISAYFMRMTSGDWQP-GAPLPLPNLLSLNTAVLAASSVAMQWA 69 Query: 92 MLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGL 151 A+ R + L + + F+ ++ + L P + S F+ L GL Sbjct: 70 RRAARRNRRVL-ARLGLALAGALALAFLAGQLLAWHALNDAGYGPTSNPAGSFFYLLTGL 128 Query: 152 HGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVY 205 HGLHV GL+ L +++ +++ + + +++WHFL L+W+ + + +Y Sbjct: 129 HGLHVIGGLVALAIVLAGLIRGHYGPRRRLPVELCALYWHFLLLVWLVLLALLY 182 >gnl|CDD|109561 pfam00510, COX3, Cytochrome c oxidase subunit III. Length = 258 Score = 61.1 bits (149), Expect = 2e-10 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 17/191 (8%) Query: 28 DGTYLGFWIYLMSDCLMFAVFFVTY--AVLGKNYAAG----PAPIDVFDISGI-FVSTIV 80 G G ++++S+ + F FF + + L G P I + + ++TI+ Sbjct: 74 KGLRYGMILFIVSEVMFFFSFFWAFFHSSLSPTVELGGTWPPVGIHPLNPFEVPLLNTII 133 Query: 81 LLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAH---LISMEAVPQ 137 LL S ++ ++A S + L +T + F ++ YE+ IS Sbjct: 134 LLSSGVTVTWAH-HSLISGNRKGALQGLFLTILLAVYFTGLQAYEYYEAPFTIS------ 186 Query: 138 RSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIW 197 + S+FF G HGLHV G I+L V ++++L S + +WHF+D++W Sbjct: 187 DGVYGSTFFMATGFHGLHVIIGTIFLLVCLLRLLNYHFTSNHHFGFEAAIWYWHFVDVVW 246 Query: 198 ICVFSFVYLMG 208 + ++ +Y G Sbjct: 247 LFLYVSIYWWG 257 >gnl|CDD|177107 MTH00028, COX3, cytochrome c oxidase subunit III; Provisional. Length = 297 Score = 57.4 bits (138), Expect = 3e-09 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%) Query: 108 LLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLV 167 LL+T G+IF ++ +E+ S + S+FF L G HGLHV G +L V Sbjct: 199 LLMTILLGIIFTGLQAFEYKE---ASFAISDSVYGSTFFMLTGTHGLHVLVGTTFLIVCF 255 Query: 168 IQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 I++L + + L +WHF+D++W+ ++ FVY G Sbjct: 256 IRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFVYWWG 296 >gnl|CDD|177212 MTH00155, COX3, cytochrome c oxidase subunit III; Provisional. Length = 255 Score = 57.1 bits (139), Expect = 3e-09 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 10/143 (6%) Query: 65 PIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIY 124 P + F I ++TI+LL S ++ ++A + T S L T G+ F +++ Y Sbjct: 121 PFNPFQI--PLLNTIILLSSGVTVTWAHHSLMENNYKQATQS-LFFTIILGIYFTMLQAY 177 Query: 125 EFAHLISMEA--VPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRR 182 E+ EA S + S+FF G HGLHV G +L V +I+ L S + Sbjct: 178 EY-----YEAPFTIADSVYGSTFFMATGFHGLHVIIGTTFLLVCLIRHLNNHFSSNHHFG 232 Query: 183 LICLSMFWHFLDLIWICVFSFVY 205 + +WHF+D++W+ ++ +Y Sbjct: 233 FEAAAWYWHFVDVVWLFLYISIY 255 >gnl|CDD|39863 KOG4664, KOG4664, KOG4664, Cytochrome oxidase subunit III and related proteins [Energy production and conversion]. Length = 261 Score = 55.0 bits (132), Expect = 1e-08 Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 11/189 (5%) Query: 28 DGTYLGFWIYLMSDCLMFAVFFVTY--AVLGKNYAAG----PAPIDVFDISGI-FVSTIV 80 G +GF ++++S+ L F F + + L G P I+ + + ++T + Sbjct: 77 KGLRVGFILFVLSEVLFFFGIFWAFFHSSLAPTVELGGCWPPTGIEPVNPLEVPLLNTSI 136 Query: 81 LLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSA 140 LL S ++ ++A S + K S LL+T + F ++ E+A Sbjct: 137 LLSSGVTVTWAH-HSLIEGNRKKATSSLLITVLLAVYFTGFQLIEYAEA---PFTISDGI 192 Query: 141 FLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICV 200 + S+FF G HG HV G ++L + I+ L + + +WHF+D++W+ + Sbjct: 193 YGSTFFVATGFHGFHVIIGTLFLPICFIRQLNNHFTKNHHVGFEAAAWYWHFVDVVWLFL 252 Query: 201 FSFVYLMGV 209 + +Y G Sbjct: 253 YVSIYWWGG 261 >gnl|CDD|164597 MTH00024, COX3, cytochrome c oxidase subunit III; Validated. Length = 261 Score = 52.4 bits (126), Expect = 8e-08 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 21/192 (10%) Query: 29 GTYLGFWIYLMSDCLMFAVFFVTY--------AVLGKNYAA-GPAPIDVFDISGIFVSTI 79 G G ++++S+ L F FF + LG + G P++ F + ++T Sbjct: 78 GLKYGMLLFILSEVLFFFSFFWAFFHSSLAPAVELGVVWPPQGINPLNPFSVP--LLNTA 135 Query: 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFI---IMEIYEFAHLISMEAVP 136 VLL S + ++A A + + + L +T F G++F +E YE IS Sbjct: 136 VLLSSGATVTWAHHAIISGKRKEAILG-LFLTVFLGVLFTGLQAIEYYEAPFAIS----- 189 Query: 137 QRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLI 196 S + S+FF G HGLHV G +LFV ++++L S +WHF+D++ Sbjct: 190 -DSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSNQFTRRQHVGFEAASWYWHFVDVV 248 Query: 197 WICVFSFVYLMG 208 W+ ++ +Y G Sbjct: 249 WLFLYLCIYWWG 260 >gnl|CDD|177238 MTH00189, COX3, cytochrome c oxidase subunit III; Provisional. Length = 260 Score = 52.7 bits (127), Expect = 8e-08 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 25/196 (12%) Query: 27 HDGTYLGFWIYLMSDCLMFAVFFVTY--AVLGKNYAAG----PAPIDVFDISGI-FVSTI 79 G G +++ S+ F FF + + L G P I+ + + ++T Sbjct: 75 QKGLRYGMILFITSEVFFFLGFFWAFFHSSLAPTVELGMCWPPTGIEPLNPFEVPLLNTA 134 Query: 80 VLLLSSLSCSFA----MLASATKRLIHKTVSWLLVTAFFGMIFI---IMEIYEFAHLISM 132 VLL S ++ ++A M + + + L +T G+ F ME YE I+ Sbjct: 135 VLLSSGVTVTWAHHSLMEGNRKE-----AIQALTLTVILGVYFTLLQAMEYYEAPFTIA- 188 Query: 133 EAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHF 192 S + S+FF G HGLHV G +L V +++ ++ S + + +WHF Sbjct: 189 -----DSVYGSTFFVATGFHGLHVIIGSTFLLVCLLRQIQGHFTSSHHFGFEAAAWYWHF 243 Query: 193 LDLIWICVFSFVYLMG 208 +D++W+ ++ +Y G Sbjct: 244 VDVVWLFLYVSIYWWG 259 >gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional. Length = 256 Score = 52.3 bits (126), Expect = 1e-07 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 9/130 (6%) Query: 78 TIVLLLSSLSCSFA--MLASATKRLIHKTVSWLLVTAFFGMIFIIMEIYEFAHLISMEAV 135 TI+LL S +S +++ L + K + LL+T F G+ F ++ E+ Sbjct: 130 TIILLSSGVSVTWSHHSLCLSNK----SCTNSLLLTCFLGLYFTSFQLMEYKEA---SFS 182 Query: 136 PQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDL 195 S + S F+ G HG+HV G ++L ++++LK + L ++WHF+D+ Sbjct: 183 ISDSIYGSIFYLGTGFHGIHVLCGGLFLLFNLLRLLKSHFNYNHHLGLEFAILYWHFVDV 242 Query: 196 IWICVFSFVY 205 +W+ +F FVY Sbjct: 243 VWLFLFVFVY 252 >gnl|CDD|177101 MTH00009, COX3, cytochrome c oxidase subunit III; Validated. Length = 259 Score = 50.6 bits (121), Expect = 3e-07 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 62 GPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFIIM 121 G P++ F + ++T VLL S ++ ++A S + + L++T G F + Sbjct: 118 GIEPLNPFSVP--LLNTAVLLASGVTVTWAH-HSLIEGDRPEATQALILTVLLGAYFTFL 174 Query: 122 EIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQR 181 + E+ I S + S+FF G HGLHV G +LFV +++ +G+ Sbjct: 175 QAGEY---IEAPFTIADSVYGSTFFVATGFHGLHVLIGSSFLFVCLLRTWSHHFSTGHHF 231 Query: 182 RLICLSMFWHFLDLIWICVFSFVYLMG 208 + +WHF+D++WI ++ +Y G Sbjct: 232 GFEAAAWYWHFVDVVWIFLYLCIYWWG 258 >gnl|CDD|177259 MTH00219, COX3, cytochrome c oxidase subunit III; Provisional. Length = 262 Score = 49.8 bits (119), Expect = 5e-07 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 21/192 (10%) Query: 29 GTYLGFWIYLMSDCLMFAVFFVTY--------AVLGKNYA-AGPAPIDVFDISGIFVSTI 79 G +G ++++S+ L F FF + LG + G P++ F + ++T Sbjct: 79 GLRIGMILFIVSEILFFFAFFWAFFHSSLAPTIELGSCWPPTGINPLNPFQVP--LLNTA 136 Query: 80 VLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFII---MEIYEFAHLISMEAVP 136 VLL S ++ ++A + LL T G+ F + ME E + IS Sbjct: 137 VLLASGVTVTWAHHSLMESNHKEAQQG-LLFTILLGLYFTMLQGMEYLEASFSIS----- 190 Query: 137 QRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLI 196 S + ++FF G HGLHV G I+LFV ++ L + + +WHF+D++ Sbjct: 191 -DSVYGTTFFVATGFHGLHVIIGTIFLFVCFMRGLMLHFSKNHHFGFEAAAWYWHFVDVV 249 Query: 197 WICVFSFVYLMG 208 W+ ++ +Y G Sbjct: 250 WLFLYVSIYWWG 261 >gnl|CDD|177114 MTH00039, COX3, cytochrome c oxidase subunit III; Validated. Length = 260 Score = 48.6 bits (116), Expect = 1e-06 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWL 163 + L +T G+ F ++ +E+ S + S+FF G HGLHV G +L Sbjct: 158 AIQALFLTVLLGLYFTALQAWEY---YDAPFTIADSVYGSTFFVATGFHGLHVIIGTTFL 214 Query: 164 FVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 V + +++ + + + +WHF+D++W+ ++ +Y G Sbjct: 215 AVCLFRLINHHFSNNHHFGFEAAAWYWHFVDVVWLFLYVCIYWWG 259 >gnl|CDD|164623 MTH00052, COX3, cytochrome c oxidase subunit III; Provisional. Length = 262 Score = 48.6 bits (116), Expect = 1e-06 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 12/150 (8%) Query: 62 GPAPIDVFDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMIFI-- 119 G P++ F + ++T VLL S + ++A + + + L +T G++F Sbjct: 121 GVDPLNPFSVP--LLNTAVLLSSGATVTWAHHGIISGKRKEAIIG-LALTVALGLLFTGL 177 Query: 120 -IMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISG 178 ME YE IS S + S+FF G HG HV G +L V + +++ Sbjct: 178 QAMEYYEAPFTIS------DSVYGSTFFVTTGAHGGHVLIGSSFLLVCLFRLINHQFTRH 231 Query: 179 NQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 + + +WHF+D++W+ +F F+Y G Sbjct: 232 HHFGFEAAAWYWHFVDVVWLFLFIFMYWWG 261 >gnl|CDD|177146 MTH00075, COX3, cytochrome c oxidase subunit III; Provisional. Length = 261 Score = 48.2 bits (115), Expect = 2e-06 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 18/154 (11%) Query: 61 AGPAPIDVFDISGIFVSTIVLLLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMI 117 G P+D F++ ++T VLL S ++ ++A ++ K I L +T G+ Sbjct: 119 TGITPLDPFEVP--LLNTAVLLASGVTVTWAHHSIMQGNRKEAIQS----LALTIILGLY 172 Query: 118 FII---MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKG 174 F + ME YE I+ + S+FF G HGLHV G ++L V +++ + Sbjct: 173 FTLLQAMEYYEAPFTIA------DGVYGSTFFVATGFHGLHVIIGSLFLLVCLLRQINFH 226 Query: 175 LISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 S + + +WHF+D++W+ ++ +Y G Sbjct: 227 FTSQHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260 >gnl|CDD|177124 MTH00049, COX3, cytochrome c oxidase subunit III; Validated. Length = 215 Score = 48.0 bits (115), Expect = 2e-06 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 19/176 (10%) Query: 33 GFWIYLMSDCLMFAVFFVTYAVLGKNYAAGPAPIDVFDISGIFVSTIVLLLSSLSCSFAM 92 FW++++S+ ++F V + +I FV +LL SS++ Sbjct: 56 AFWLFILSEVIIFGSLLVCCLWFDDWSYISLS--SSLEIP--FVGCFLLLGSSIT----- 106 Query: 93 LASATKRLIHKTVSW--LLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVG 150 +A L+ L +T G++F++++++EF S++ +S F VG Sbjct: 107 -VTAYHHLLGWKYCDLFLYLTILLGLLFVVLQVFEF---EESGVNSLDSSYYASCFCTVG 162 Query: 151 LHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWHFLDLIWICVFSFVYL 206 LH HV G++ L +L G S R L+ +WHF+D IW+ V+ VY+ Sbjct: 163 LHFSHVVLGVVGL----STLLLVGSSSFGVYRSTVLTWYWHFVDYIWLLVYLIVYV 214 >gnl|CDD|177179 MTH00118, COX3, cytochrome c oxidase subunit III; Provisional. Length = 261 Score = 46.5 bits (111), Expect = 5e-06 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 18/153 (11%) Query: 62 GPAPIDVFDISGIFVSTIVLLLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMIF 118 G P++ F++ ++T VLL S ++ ++A ++ K+ I L +T G+ F Sbjct: 120 GIKPLNPFEVP--LLNTAVLLASGVTVTWAHHSIMEGNRKQAIQA----LTLTILLGLYF 173 Query: 119 II---MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGL 175 ME YE IS S + S+FF G HGLHV G +L V +++++K Sbjct: 174 TALQAMEYYEAPFTIS------DSVYGSTFFVATGFHGLHVIIGSTFLIVCLLRLIKFHF 227 Query: 176 ISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 + + + +WHF+D++W+ ++ +Y G Sbjct: 228 TTNHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260 >gnl|CDD|177161 MTH00099, COX3, cytochrome c oxidase subunit III; Validated. Length = 261 Score = 46.6 bits (111), Expect = 5e-06 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 16/137 (11%) Query: 78 TIVLLLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMIFI---IMEIYEFAHLIS 131 T VLL S +S ++A ++ K ++ L +T G+ F E YE IS Sbjct: 134 TSVLLASGVSITWAHHSLMEGNRKHMLQA----LFITILLGLYFTLLQASEYYEAPFTIS 189 Query: 132 MEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKGLISGNQRRLICLSMFWH 191 + S+FF G HGLHV G +L V ++ LK S + + +WH Sbjct: 190 ------DGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWH 243 Query: 192 FLDLIWICVFSFVYLMG 208 F+D++W+ ++ +Y G Sbjct: 244 FVDVVWLFLYVSIYWWG 260 >gnl|CDD|177188 MTH00130, COX3, cytochrome c oxidase subunit III; Provisional. Length = 261 Score = 45.9 bits (109), Expect = 7e-06 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 18/154 (11%) Query: 61 AGPAPIDVFDISGIFVSTIVLLLSSLSCSFA---MLASATKRLIHKTVSWLLVTAFFGMI 117 G +D F++ ++T VLL S ++ ++A ++ K+ I L +T G Sbjct: 119 TGITTLDPFEVP--LLNTAVLLASGVTVTWAHHSIMEGERKQAIQS----LTLTILLGFY 172 Query: 118 FII---MEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWLFVLVIQILKKG 174 F ME YE I+ + S+FF G HGLHV G +L V +++ ++ Sbjct: 173 FTFLQAMEYYEAPFTIA------DGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYH 226 Query: 175 LISGNQRRLICLSMFWHFLDLIWICVFSFVYLMG 208 S + + +WHF+D++W+ ++ +Y G Sbjct: 227 FTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 260 >gnl|CDD|38820 KOG3614, KOG3614, KOG3614, Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 1381 Score = 30.7 bits (69), Expect = 0.29 Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 28/111 (25%) Query: 104 TVSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGLHGLHVFFGLIWL 163 WL V ++ + + F +++ ++ P S + FA W+ Sbjct: 793 VKFWLNVLSYIAFLLL------FTYVLLVDFQPSPSMWEWILFA--------------WI 832 Query: 164 FVLVIQILKKGLISG----NQRRLICLSMFWHFLDLIWICVFSFVYLMGVV 210 F L ++ +++ IS Q+ + + FW+ +DL+ I ++L+G V Sbjct: 833 FTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAI----LLFLVGPV 879 >gnl|CDD|39229 KOG4026, KOG4026, KOG4026, Uncharacterized conserved protein [Function unknown]. Length = 207 Score = 27.6 bits (61), Expect = 2.3 Identities = 12/49 (24%), Positives = 19/49 (38%) Query: 69 FDISGIFVSTIVLLLSSLSCSFAMLASATKRLIHKTVSWLLVTAFFGMI 117 F ++ FV +L+ L A+L + I W+ A MI Sbjct: 77 FKLAAFFVLLAFVLILLLIVFLALLGCCRSKSIFNMCGWMQGIAGLCMI 125 >gnl|CDD|34270 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]. Length = 408 Score = 26.0 bits (57), Expect = 7.4 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 105 VSWLLVTAFFGMIFIIMEIYEFAHLISMEAVPQRSAFLSSFFALVGL 151 VS+ L F GM+ + E +H + +++P R AF FF VG+ Sbjct: 248 VSFALGAFFAGMV---LAESELSHRAAEDSLPLRDAFAVLFFVSVGM 291 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.335 0.146 0.465 Gapped Lambda K H 0.267 0.0746 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,701,072 Number of extensions: 147873 Number of successful extensions: 1031 Number of sequences better than 10.0: 1 Number of HSP's gapped: 963 Number of HSP's successfully gapped: 199 Length of query: 210 Length of database: 6,263,737 Length adjustment: 90 Effective length of query: 120 Effective length of database: 4,318,927 Effective search space: 518271240 Effective search space used: 518271240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 55 (24.9 bits)