HHsearch alignment for GI: 254780473 and conserved domain: COG3278
>COG3278 CcoN Cbb3-type cytochrome oxidase, subunit 1 [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=9.4e-40 Score=287.86 Aligned_cols=440 Identities=18% Similarity=0.250 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79999999999999999999999999985076756677668789899999999999999999999999999999864986
Q gi|254780473|r 65 KKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGAR 144 (671)
Q Consensus 65 K~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGar 144 (671)
T Consensus 13 ~~vvr~f~~~tv~wgivgmlvGv~iA~qL~~P~ln~~~-~~w~~FGRlRplHtnaVifafgg~al~ats~yVvqRt~k~r 91 (482)
T COG3278 13 YKVVRQFLIATVVWGIVGMLVGVLIAAQLAWPDLNFDP-APWLSFGRLRPLHTNAVIFAFGGNALIATSYYVVQRTCKAR 91 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHCCCCCCCCCEECEEEEECCCCCHHEEEEEEEEEHHCCE
T ss_conf 58899999999999999999999999987265455674-30000242233300233233146302103303543001202
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40058899999999999999999999717677888313478655877885204588779999999998755689999997
Q gi|254780473|r 145 DVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIK 224 (671)
Q Consensus 145 dlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~ 224 (671)
T Consensus 92 -L~~~~l~~f~fwgwq~~iV~a~~s~~~G~T~-----------skEyaE---~-eW~idi~~~-ivwv~y~i~f~gTi~~ 154 (482)
T COG3278 92 -LFGGNLAWFVFWGWQLFIVLAAISLPLGLTQ-----------SKEYAE---L-EWPIDILLT-IVWVAYGIVFFGTILK 154 (482)
T ss_pred -ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-----------CHHHCC---C-CCHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf -0267218999999999999998777304556-----------313303---5-643678999-9999999999999987
Q ss_pred HCCCCCCHHHCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 236898831331566689999----9999997333578889987776329801146543210132212333401257999
Q gi|254780473|r 225 MRCPGMTMMKMPVFVWTAFCS----NIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL 300 (671)
Q Consensus 225 ~RapGm~l~rmPlf~W~~l~t----sil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIl 300 (671)
T Consensus 155 rk~~hi-----YVanWfy~afi~~iamLhivN--------n~~vPv~~~~~kSys~ysGv~DA~vQ---WWyGHnaVgFf 218 (482)
T COG3278 155 RKEPHI-----YVANWFYGAFIVTIAMLHIVN--------NLSVPVSFFGWKSYSAYSGVQDALVQ---WWYGHNAVGFF 218 (482)
T ss_pred HCCCEE-----EEEEHHHHHHHHHHHHHHHHH--------CCCCCEEEECCCCEEECCCHHHHHHH---HHHCCCEEEHH
T ss_conf 438728-----997088899999999999983--------34676587414311100456889999---87356500011
Q ss_pred HHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987-9999999985310564026689999999999997533221022478758899876533467889877999987874
Q gi|254780473|r 301 VLP-AFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFT 379 (671)
Q Consensus 301 iLP-a~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~T 379 (671)
T Consensus 219 lT~gfL~mmYYFvPKqa~rPiySYrLSivhFWaLif~YiwAGpHHLhytalPdW~qtLgmVfS~mL~~PswggmINglmT 298 (482)
T COG3278 219 LTAGFLGMMYYFVPKQAGRPIYSYRLSIVHFWALIFLYIWAGPHHLHYTALPDWAQTLGMVFSLMLLAPSWGGMINGLMT 298 (482)
T ss_pred HHHHHHHHHHHCCHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35767777310360002995335542199999999997520665101467845999988999899875057655577743
Q ss_pred HCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 2587--3022437999999999999887556530343211121274220447899999999999999999962443076-
Q gi|254780473|r 380 MRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGY- 456 (671)
Q Consensus 380 l~~G--~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr- 456 (671)
T Consensus 299 lsGaw~klr~dPilrflv~a~~fYgmSTfEGpmmaIksVNaLsHyTdwtiGHVH~GalgwV~~it~gsiY~~vPrl~~r~ 378 (482)
T COG3278 299 LSGAWHKLRTDPILRFLVVALAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVGFITIGSIYHMVPRLFGRE 378 (482)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 20057666038169999999998725640462232000112220225520120243266788887877984228875866
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHCC------CC--C--CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7-4716899999999999999999999987-6405303002------58--7--00579999999999999999999999
Q gi|254780473|r 457 Q-LNSFWGKVSFWCWFVGFYLAFMPLYALG-LKGVTRRLSQ------YE--D--TTLQVYYVVALLGAVLIGIGVFSFVL 524 (671)
Q Consensus 457 ~-l~e~lgk~~Fwl~~iGf~l~F~pm~~lG-l~GmpRR~~~------y~--~--~~~~~~n~istiGa~l~~~g~l~f~~ 524 (671)
T Consensus 379 ~mys~~Li~~hFWlatiGivlY~aaMwiaGi~QGLmwr~~~~~G~L~ysFiesv~a~~Pyy~iR~vGG~~~l~G~llmay 458 (482)
T COG3278 379 RMYSLRLVNAHFWLATIGIVLYIAAMWIAGITQGLMWRAYDEDGTLTYSFIESVVATHPYYVIRAVGGLLYLSGMLLMAY 458 (482)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 33534465788999987589999999998887500212105788278667888886250678887511999988899999
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 99999744953568
Q gi|254780473|r 525 SFIVSFLNRSKLQD 538 (671)
Q Consensus 525 nl~~S~~~~~~~~~ 538 (671)
T Consensus 459 n~~~Ti~~~~~~~~ 472 (482)
T COG3278 459 NIWMTIRGGKPLEA 472 (482)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 98885206775545