HHsearch alignment for GI: 254780473 and conserved domain: MTH00037
>MTH00037 COX1 cytochrome c oxidase subunit I; Provisional.
Probab=95.59 E-value=0.16 Score=28.03 Aligned_cols=254 Identities=17% Similarity=0.243 Sum_probs=107.8
Q ss_pred HHHHHHHH-HHHHHHHHHCCCCCCHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHH-H
Q ss_conf 99987556-899999972368988313315666899999-99999733357888998777632980114654321013-2
Q gi|254780473|r 209 IGTTLSGI-NLVVTIIKMRCPGMTMMKMPVFVWTAFCSN-IMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMM-Y 285 (671)
Q Consensus 209 igsll~~i-Nfi~TI~~~RapGm~l~rmPlf~W~~l~ts-il~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL-~ 285 (671)
T Consensus 71 mP~~~ggfgNyliPlm-iGa~DmaFPRLN~~SfWl~~~~~~l~~~s~~~~~g--------~~~GWT~YpPLS~~~~~~g~ 141 (517)
T MTH00037 71 MPIMIGGFGNWLIPLM-IGAPDMAFPRMNNMSFWLIPPSFLLLLASAGVESG--------AGTGWTIYPPLSSGLAHAGG 141 (517)
T ss_pred HHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCCCCCCCCCCCCCCCCCCH
T ss_conf 9999999899999997-49974142608999999999999999999734688--------89987110785456779960
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH------HHCCCCCHHHHHHHHHHHHHHHHHHHHH-------------HHHC
Q ss_conf 21233340125799-99879999999985------3105640266899999999999975332-------------2102
Q gi|254780473|r 286 INLIWIWGHPEVYI-LVLPAFGIFSEVVA------TFSGKRLFGYNSMVYATLAITILSYTVW-------------LHHF 345 (671)
Q Consensus 286 q~LFW~fGHPeVYI-liLPa~Gi~seiip------~fs~kplfgy~~~v~A~~~i~~lsf~VW-------------~HHm 345 (671)
T Consensus 142 ~vd~~i~~l~l~gisSil~siNfi~Ti~~mR~pGm~~~~mPlf~Ws~l~ts~--lllla~PvL~~a~~mll~DR~~~t~F 219 (517)
T MTH00037 142 SVDLAIFSLHLAGASSILASINFITTIINMRTPGMSFDRLPLFVWSVFVTAF--LLLLSLPVLAGAITMLLTDRNINTTF 219 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999999999999986899999899856899983104599999999999--99976449999999987211038856
Q ss_pred CCC---CCCHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHCCCCCEEC-HHHHHHHHHHHH--HHHHHHHHHHCCCCC
Q ss_conf 247---875889987---65-33467889877999987874258730224-379999999999--998875565303432
Q gi|254780473|r 346 FTM---GSGANVNAF---FG-IMTMVIAVPTGAKIFNWLFTMRLGKVRFE-VPMMWTLGFMIT--FLIGGMTGVLLAVPP 415 (671)
Q Consensus 346 Ft~---G~~~~~~~~---F~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~-~pml~~lgfi~~--F~iGG~tGv~lA~~~ 415 (671)
T Consensus 220 F~~~~GGdpiL~QhLFWffGHPEVYIliLPafGiiSeii~~fs~rk~iFGy~~mv~A~~~I~~lgf~VW~-HHMFt--~G 296 (517)
T MTH00037 220 FDPAGGGDPILFQHLFWFFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAMIAIGILGFLVWA-HHMFT--VG 296 (517)
T ss_pred CCCCCCCCHHHHHCHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCC--CC
T ss_conf 6767787633552213315986244110403688877651024886431209999999999987777644-43020--47
Q ss_pred CCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 111212742204478999999999999999999624430767471689999999999999999999998764053
Q gi|254780473|r 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVT 490 (671)
Q Consensus 416 ~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~Gmp 490 (671)
T Consensus 297 ~~~-~~~~~F~~~-----Tm~IavPTgi-kvF~WiaTl~~g~i~~~----~pml~~lgFi~~F~---iGGlTGv~ 357 (517)
T MTH00037 297 MDV-DTRAYFTAA-----TMIIAVPTGI-KVFSWMATLQGSNLRWD----TPLLWALGFVFLFT---LGGLTGVV 357 (517)
T ss_pred CCC-HHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHH---HHCCCEEE
T ss_conf 782-367799999-----9998743589-99999999858988898----88999999999997---20421122