HHsearch alignment for GI: 254780473 and conserved domain: TIGR00780
>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I; InterPro: IPR004677 This family represents the largest subunit, I, of the ccb3-type cytochrome c oxidase 1.9.3.1 from EC, with two protohemes and copper. It shows strong homology to subunits of other types of cytochrome oxidases. Species with this type, all from the proteobacteria so far, include Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Rhodobacter sphaeroides, Rhizobium leguminosarum, and others.; GO: 0004129 cytochrome-c oxidase activity, 0006118 electron transport, 0045278 plasma membrane respiratory chain complex IV.
Probab=100.00 E-value=6.3e-42 Score=302.66 Aligned_cols=451 Identities=18% Similarity=0.264 Sum_probs=369.4
Q ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 014-799999999999999999999999999850767566776687--89899999999999999999999999999999
Q gi|254780473|r 62 VDH-KKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDA--HHYDQIFTAHGVIMIFFVAMPMITGIMNFVVP 138 (671)
Q Consensus 62 ~dH-K~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~--~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvP 138 (671)
T Consensus 3 y~Y~d~vvr~f~ia~v~wGiVGmLvGvv~Af~L~fPaLnlS~-I~~~y~~FGrLRPLHTnAVIfaFgg~GliatsyYvvQ 81 (485)
T TIGR00780 3 YDYMDSVVRLFLIATVVWGIVGMLVGVVVAFQLSFPALNLSD-IAGEYGIFGRLRPLHTNAVIFAFGGGGLIATSYYVVQ 81 (485)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 524789998787743432167789999999986056456011-3565235786686502366653222215544667656
Q ss_pred H--HCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--649864005-8899999999999999999999717677888313478655877885204588779999999998755
Q gi|254780473|r 139 L--QIGARDVSF-PFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSG 215 (671)
Q Consensus 139 l--~iGardlaF-Prlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~ 215 (671)
T Consensus 82 RvlkiT~~~rlfgg~~~~f~FWgw~~~ivlav~s~~~G~------TQ-----sKEYAEl----~Wp~Di~~~-vvWV~y~ 145 (485)
T TIGR00780 82 RVLKITYAQRLFGGIVGLFVFWGWQILIVLAVISLILGL------TQ-----SKEYAEL----EWPVDILVT-VVWVLYA 145 (485)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CC-----CCCCCCC----CCHHHHHHH-HHHHHHH
T ss_conf 576651113511136899998999999999999997246------66-----7300364----405899999-9999999
Q ss_pred HHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 689999997236898831331566689999999--999733357888998777632980114654321013221233340
Q gi|254780473|r 216 INLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIM--IIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293 (671)
Q Consensus 216 iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil--~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fG 293 (671)
T Consensus 146 ~vffGti~~Rke~~-----IYVa~WfY~~fiv~iA~lhIvNNlsiP~~l~~-DmGsv~kS~~~ySG~~DA~~Q---WWyG 216 (485)
T TIGR00780 146 VVFFGTISKRKEKH-----IYVANWFYIAFIVGIALLHIVNNLSIPTYLVA-DMGSVWKSISLYSGSNDAMIQ---WWYG 216 (485)
T ss_pred HHHHHHHHHCCCCC-----EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHH---HHHH
T ss_conf 99850342222462-----35505899999999999999967776578763-212001445202451235454---0256
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12579999879-99999998531056402668999999999999753322102247875889987653346788987799
Q gi|254780473|r 294 HPEVYILVLPA-FGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAK 372 (671)
Q Consensus 294 HPeVYIliLPa-~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvk 372 (671)
T Consensus 217 HNAVgF~lTaG~lG~~YYF~PK~a~rPvySYkLs~~~FWaLiF~YiWAGpHHL~YtalPDW~qtLg~VfS~iL~~PSWGg 296 (485)
T TIGR00780 217 HNAVGFFLTAGFLGMMYYFVPKQAERPVYSYKLSVVHFWALIFVYIWAGPHHLHYTALPDWVQTLGMVFSVILILPSWGG 296 (485)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 78999999755686654136644678733204779999999999974388411014654046777899999986166046
Q ss_pred HHHHHHHHCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99878742587--3022437999999999999887556530343211121274220447899999999999999999962
Q gi|254780473|r 373 IFNWLFTMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWF 450 (671)
Q Consensus 373 iFnwl~Tl~~G--~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~ 450 (671)
T Consensus 297 ~INgl~TlsGaWdkLr~dPiikflvva~~FYg~sTfEGp~~sIK~VNalsHyTDW~igHVH~GaLGWvGf~~igs~Yym~ 376 (485)
T TIGR00780 297 MINGLMTLSGAWDKLRTDPIIKFLVVAVTFYGMSTFEGPMMSIKSVNALSHYTDWTIGHVHDGALGWVGFVTIGSLYYMV 376 (485)
T ss_pred HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 89888854045222142638999999977766765333458888875443302432433207731357999999999850
Q ss_pred HHHHCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-CCHHHCCCCCC---------HHHHHHHHHHHHHHHHHH
Q ss_conf 443076-7-47168999999999999999999999876-40-53030025870---------057999999999999999
Q gi|254780473|r 451 PKAFGY-Q-LNSFWGKVSFWCWFVGFYLAFMPLYALGL-KG-VTRRLSQYEDT---------TLQVYYVVALLGAVLIGI 517 (671)
Q Consensus 451 Pk~~Gr-~-l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl-~G-mpRR~~~y~~~---------~~~~~n~istiGa~l~~~ 517 (671)
T Consensus 377 PRLfgrE~~ySt~LV~~~FWiaTiG~VLY~asMWiaGi~qGlMWr~vd~~G~Lty~F~dtVk~~~PyyviR~~GGllYl~ 456 (485)
T TIGR00780 377 PRLFGREELYSTRLVDFHFWIATIGIVLYIASMWIAGIMQGLMWRDVDQDGNLTYQFIDTVKVLIPYYVIRGVGGLLYLI 456 (485)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 34145321010551237788999999999987578764057530102357853187799998755823567776899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999999744953568
Q gi|254780473|r 518 GVFSFVLSFIVSFLNRSKLQD 538 (671)
Q Consensus 518 g~l~f~~nl~~S~~~~~~~~~ 538 (671)
T Consensus 457 G~~I~aYN~~~T~~~gkk~~~ 477 (485)
T TIGR00780 457 GFIIMAYNIFATITAGKKLER 477 (485)
T ss_pred HHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999736862124