HHsearch alignment for GI: 254780473 and conserved domain: TIGR00780

>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I; InterPro: IPR004677 This family represents the largest subunit, I, of the ccb3-type cytochrome c oxidase 1.9.3.1 from EC, with two protohemes and copper. It shows strong homology to subunits of other types of cytochrome oxidases. Species with this type, all from the proteobacteria so far, include Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Rhodobacter sphaeroides, Rhizobium leguminosarum, and others.; GO: 0004129 cytochrome-c oxidase activity, 0006118 electron transport, 0045278 plasma membrane respiratory chain complex IV.
Probab=100.00  E-value=6.3e-42  Score=302.66  Aligned_cols=451  Identities=18%  Similarity=0.264  Sum_probs=369.4

Q ss_pred             CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             014-799999999999999999999999999850767566776687--89899999999999999999999999999999
Q gi|254780473|r   62 VDH-KKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDA--HHYDQIFTAHGVIMIFFVAMPMITGIMNFVVP  138 (671)
Q Consensus        62 ~dH-K~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~--~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvP  138 (671)
T Consensus         3 y~Y~d~vvr~f~ia~v~wGiVGmLvGvv~Af~L~fPaLnlS~-I~~~y~~FGrLRPLHTnAVIfaFgg~GliatsyYvvQ   81 (485)
T TIGR00780         3 YDYMDSVVRLFLIATVVWGIVGMLVGVVVAFQLSFPALNLSD-IAGEYGIFGRLRPLHTNAVIFAFGGGGLIATSYYVVQ   81 (485)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             524789998787743432167789999999986056456011-3565235786686502366653222215544667656


Q ss_pred             H--HCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8--649864005-8899999999999999999999717677888313478655877885204588779999999998755
Q gi|254780473|r  139 L--QIGARDVSF-PFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSG  215 (671)
Q Consensus       139 l--~iGardlaF-Prlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~  215 (671)
T Consensus        82 RvlkiT~~~rlfgg~~~~f~FWgw~~~ivlav~s~~~G~------TQ-----sKEYAEl----~Wp~Di~~~-vvWV~y~  145 (485)
T TIGR00780        82 RVLKITYAQRLFGGIVGLFVFWGWQILIVLAVISLILGL------TQ-----SKEYAEL----EWPVDILVT-VVWVLYA  145 (485)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CC-----CCCCCCC----CCHHHHHHH-HHHHHHH
T ss_conf             576651113511136899998999999999999997246------66-----7300364----405899999-9999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             689999997236898831331566689999999--999733357888998777632980114654321013221233340
Q gi|254780473|r  216 INLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIM--IIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG  293 (671)
Q Consensus       216 iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil--~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fG  293 (671)
T Consensus       146 ~vffGti~~Rke~~-----IYVa~WfY~~fiv~iA~lhIvNNlsiP~~l~~-DmGsv~kS~~~ySG~~DA~~Q---WWyG  216 (485)
T TIGR00780       146 VVFFGTISKRKEKH-----IYVANWFYIAFIVGIALLHIVNNLSIPTYLVA-DMGSVWKSISLYSGSNDAMIQ---WWYG  216 (485)
T ss_pred             HHHHHHHHHCCCCC-----EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHH---HHHH
T ss_conf             99850342222462-----35505899999999999999967776578763-212001445202451235454---0256


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12579999879-99999998531056402668999999999999753322102247875889987653346788987799
Q gi|254780473|r  294 HPEVYILVLPA-FGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAK  372 (671)
Q Consensus       294 HPeVYIliLPa-~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvk  372 (671)
T Consensus       217 HNAVgF~lTaG~lG~~YYF~PK~a~rPvySYkLs~~~FWaLiF~YiWAGpHHL~YtalPDW~qtLg~VfS~iL~~PSWGg  296 (485)
T TIGR00780       217 HNAVGFFLTAGFLGMMYYFVPKQAERPVYSYKLSVVHFWALIFVYIWAGPHHLHYTALPDWVQTLGMVFSVILILPSWGG  296 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             78999999755686654136644678733204779999999999974388411014654046777899999986166046


Q ss_pred             HHHHHHHHCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99878742587--3022437999999999999887556530343211121274220447899999999999999999962
Q gi|254780473|r  373 IFNWLFTMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWF  450 (671)
Q Consensus       373 iFnwl~Tl~~G--~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~  450 (671)
T Consensus       297 ~INgl~TlsGaWdkLr~dPiikflvva~~FYg~sTfEGp~~sIK~VNalsHyTDW~igHVH~GaLGWvGf~~igs~Yym~  376 (485)
T TIGR00780       297 MINGLMTLSGAWDKLRTDPIIKFLVVAVTFYGMSTFEGPMMSIKSVNALSHYTDWTIGHVHDGALGWVGFVTIGSLYYMV  376 (485)
T ss_pred             HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             89888854045222142638999999977766765333458888875443302432433207731357999999999850


Q ss_pred             HHHHCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-CCHHHCCCCCC---------HHHHHHHHHHHHHHHHHH
Q ss_conf             443076-7-47168999999999999999999999876-40-53030025870---------057999999999999999
Q gi|254780473|r  451 PKAFGY-Q-LNSFWGKVSFWCWFVGFYLAFMPLYALGL-KG-VTRRLSQYEDT---------TLQVYYVVALLGAVLIGI  517 (671)
Q Consensus       451 Pk~~Gr-~-l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl-~G-mpRR~~~y~~~---------~~~~~n~istiGa~l~~~  517 (671)
T Consensus       377 PRLfgrE~~ySt~LV~~~FWiaTiG~VLY~asMWiaGi~qGlMWr~vd~~G~Lty~F~dtVk~~~PyyviR~~GGllYl~  456 (485)
T TIGR00780       377 PRLFGREELYSTRLVDFHFWIATIGIVLYIASMWIAGIMQGLMWRDVDQDGNLTYQFIDTVKVLIPYYVIRGVGGLLYLI  456 (485)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             34145321010551237788999999999987578764057530102357853187799998755823567776899999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999999999999744953568
Q gi|254780473|r  518 GVFSFVLSFIVSFLNRSKLQD  538 (671)
Q Consensus       518 g~l~f~~nl~~S~~~~~~~~~  538 (671)
T Consensus       457 G~~I~aYN~~~T~~~gkk~~~  477 (485)
T TIGR00780       457 GFIIMAYNIFATITAGKKLER  477 (485)
T ss_pred             HHHHHHHHHHHHHHCCCCCCC
T ss_conf             999999999999736862124