HHsearch alignment for GI: 254780473 and conserved domain: TIGR02843
>TIGR02843 CyoB cytochrome o ubiquinol oxidase, subunit I; InterPro: IPR014207 This entry represents subunit 1 (CyoB) of the cytochrome o terminal oxidase complex, which is a component of the aerobic respiratory chain that reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilise cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant..
Probab=100.00 E-value=0 Score=1924.88 Aligned_cols=645 Identities=68% Similarity=1.242 Sum_probs=640.5
Q ss_pred HCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02335214657573799999999999999999997506332344303000014799999999999999999999999999
Q gi|254780473|r 12 FGRLTINSIPYNIPIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRL 91 (671)
Q Consensus 12 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~w~~lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~ 91 (671)
T Consensus 1 fGKLt~~~~~~~ePi~~~~~~~~~~~~~~~~~~it~~~kW~~LW~eW~ttVDHKkIG~MYi~~a~vMLlRGFaDAimmR~ 80 (646)
T TIGR02843 1 FGKLTLEAIPLHEPIIMVTLVAVALGGLAVLGAITYLRKWGYLWNEWLTTVDHKKIGIMYIIVALVMLLRGFADAIMMRT 80 (646)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98654200033662999999999999999999999975247765076303066135689999999997423688999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85076756677668789899999999999999999999999999999864986400588999999999999999999997
Q gi|254780473|r 92 QQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLF 171 (671)
Q Consensus 92 qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~ 171 (671)
T Consensus 81 qqala~g~~~GyL~p~HyDqiFtAHGViMIFF~Amp~~~GL~N~~vPLQIGARDVAFPflN~lSFWl~~~gA~L~~~SL~ 160 (646)
T TIGR02843 81 QQALASGESEGYLPPEHYDQIFTAHGVIMIFFVAMPLVVGLMNLVVPLQIGARDVAFPFLNSLSFWLTVVGAILVNISLG 160 (646)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99996368899768642111221224878889899999999876621014722343566766899999999999999987
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 17677888313478655877885204588779999999998755689999997236898831331566689999999999
Q gi|254780473|r 172 IGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIA 251 (671)
Q Consensus 172 ~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~ 251 (671)
T Consensus 161 ~G~FA~tGWlAYPPLS~~~ySP~vGvDYyiW~LqiSG~GtlL~giNf~vTi~KMR~pGM~lm~mPvF~W~~l~~~iLI~~ 240 (646)
T TIGR02843 161 VGEFAQTGWLAYPPLSELQYSPGVGVDYYIWALQISGIGTLLTGINFLVTIIKMRAPGMTLMKMPVFTWTSLCSNILIVA 240 (646)
T ss_pred HCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 40022168522687566778989741488898898568999888999998887436775300362788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 73335788899877763298011465432101322123334012579999879999999985310564026689999999
Q gi|254780473|r 252 AFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATL 331 (671)
Q Consensus 252 a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~ 331 (671)
T Consensus 241 ~FPiLT~tL~LLtlDRYlg~hFFT~~~GGn~MmYvNLiW~WGHPEVYiLiLP~FG~fSEv~aTFS~K~LFGY~smV~A~~ 320 (646)
T TIGR02843 241 SFPILTATLALLTLDRYLGMHFFTNEAGGNPMMYVNLIWIWGHPEVYILILPAFGIFSEVVATFSSKRLFGYTSMVWATI 320 (646)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEHHHHHHHCCCCEEEEEEECCCCCEECEECCCCCCCCCCCHHHHHHHH
T ss_conf 81799999999987887276300230588722110020223796446453144440001000035766664179999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999753322102247875889987653346788987799998787425873022437999999999999887556530
Q gi|254780473|r 332 AITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLL 411 (671)
Q Consensus 332 ~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~l 411 (671)
T Consensus 321 ~I~~LSF~VWlHHFFTMG~g~~VNaFFGi~TmIIaiPTGvKiFnWLFTmYkGri~f~~p~LW~~GF~~tF~iGGmTGVLl 400 (646)
T TIGR02843 321 AITILSFLVWLHHFFTMGSGANVNAFFGIATMIIAIPTGVKIFNWLFTMYKGRIRFETPMLWTIGFLVTFTIGGMTGVLL 400 (646)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999876541126887533567767887753156215775656654151575334899999999866456777887
Q ss_pred CCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 34321112127422044789999999999999999996244307674716899999999999999999999987640530
Q gi|254780473|r 412 AVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTR 491 (671)
Q Consensus 412 A~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpR 491 (671)
T Consensus 401 a~P~~DF~lHNSLFLiAHFHnvIIGGvvFG~~AG~~yWFPK~FGF~L~e~lG~~sFWcW~~GF~~AFmPlY~LG~mG~tR 480 (646)
T TIGR02843 401 AVPPADFVLHNSLFLIAHFHNVIIGGVVFGYLAGLTYWFPKAFGFKLNEKLGKASFWCWLIGFYLAFMPLYVLGLMGMTR 480 (646)
T ss_pred HHCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52343503122688887770312488899999878874001257542166637898999999999998888875303666
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 30025870057999999999999999999999999999744953568999899997101269981199894759607845
Q gi|254780473|r 492 RLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTI 571 (671)
Q Consensus 492 R~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~ 571 (671)
T Consensus 481 RL~~~~~~~w~~~l~~a~~Ga~lI~~Gi~~~~~q~~vSi~~R~~~~d~~GD~W~gRTLEWs~~SP~P~YNFA~~P~v~~~ 560 (646)
T TIGR02843 481 RLNHYDNPEWQPYLIVAAIGAVLIAIGILCQLLQIFVSIRDRDQLRDTTGDPWNGRTLEWSTSSPPPFYNFAVIPKVEDR 560 (646)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65331040135899999999999999999999999988872355102468887762312346877876665446621540
Q ss_pred CCHHHHHHCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf 50477555397677-67873661899885899999999999999999999999999999999999998314898455678
Q gi|254780473|r 572 DAWEHMKNRGYRYP-SEGFMPIHMPSNTATGIILAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAK 650 (671)
Q Consensus 572 d~~~~~k~~~~~~~-~~~~~~ihmP~~t~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (671)
T Consensus 561 D~~w~~K~~G~~~~~~~~y~~IHmP~nT~~G~~i~~f~~~~GFA~vWhIWWl~~~~~~g~i~~~i~~s~~~d~dYyv~a~ 640 (646)
T TIGR02843 561 DAYWDMKKKGVATKRPKKYEDIHMPKNTAAGFIIAAFSLVLGFALVWHIWWLAIIGLVGIIATLIVRSFDDDVDYYVPAE 640 (646)
T ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHH
T ss_conf 55788765023341101201024889605899999999999999999999999999999999999998415887422186
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780473|r 651 DVAFSE 656 (671)
Q Consensus 651 ~~~~~e 656 (671)
T Consensus 641 ~v~~iE 646 (646)
T TIGR02843 641 EVKKIE 646 (646)
T ss_pred HHHCCC
T ss_conf 440169