HHsearch alignment for GI: 254780473 and conserved domain: cd01660

>cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.
Probab=100.00  E-value=0  Score=913.30  Aligned_cols=448  Identities=22%  Similarity=0.382  Sum_probs=419.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47999999999999999999999999998507675667766878989999999999999999999999999999986498
Q gi|254780473|r   64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGA  143 (671)
Q Consensus        64 HK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGa  143 (671)
T Consensus         2 ~K~igl~y~v~~~~~~~~gg~~all~r~~~~~~~---~~~~~~~~Yn~~~T~Hg~~Mif~~~~~~~~G~~~~l~~~~~-~   77 (473)
T cd01660           2 EKKLALAHFVVAFLALLLGGLFGLLQVLVRTGVF---PLPSSGILYYQGLTLHGVLLAIVFTTFFIMGFFYAIVARAL-L   77 (473)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_conf             5501399999999999999999999999971886---56898327788679999999999999999999999999980-9


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64005889999999999999999999971767788831347865587788520458877999999999875568999999
Q gi|254780473|r  144 RDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTII  223 (671)
Q Consensus       144 rdlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~  223 (671)
T Consensus        78 ~~~~~prl~~~~fwl~~~g~~l~~~s~~~G~-~~~gwt~Y~PL~~~--------~~~~~g~~l~~v~~~l~~~~~~~t~~  148 (473)
T cd01660          78 RSLFNRRLAWAGFWLMVIGTVMAAVPILLGQ-ASVLYTFYPPLQAH--------PLFYIGAALVVVGSWISGFAMFVTLW  148 (473)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCEECCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8775289999999999999999999996588-88887027842001--------45899999999999999999999999


Q ss_pred             HHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             72368988313315666899999999997333578889987776329801146543210132212333401257999987
Q gi|254780473|r  224 KMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLP  303 (671)
Q Consensus       224 ~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLP  303 (671)
T Consensus       149 ~~r~~~~~-~~~pl~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~-----~~~~dp~l~qhLFWffGHpeVyi~ilP  222 (473)
T cd01660         149 RWKKANPG-KKVPLATFMVVTTMILWLVASLGVALEVLFQLLPWSLGL-----VDTVDVLLSRTLFWWFGHPLVYFWLLP  222 (473)
T ss_pred             HHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             99636988-876199999999999999999999999999999887177-----678679999999999254689999999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf             999999998531056402668999999999999753322102247-87588998765334678898779999878742--
Q gi|254780473|r  304 AFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTM-GSGANVNAFFGIMTMVIAVPTGAKIFNWLFTM--  380 (671)
Q Consensus       304 a~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~-G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl--  380 (671)
T Consensus       223 a~g~~~~iip~~~~kpif~~~~~~~a~~~i~~l~~~vw~HHmf~~~g~~~~~~~~~~~~T~~iavPt~v~vf~~~~Tl~~  302 (473)
T cd01660         223 AYIAWYTILPKIAGGKLFSDPLARLAFILFLLFSTPVGFHHQFADPGIGPGWKFIHMVLTFMVALPSLLTAFTVFASLEI  302 (473)
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999987338873100799999999999999961335315778668999999999999999876999999999875


Q ss_pred             ------------CCCCCEECHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------------5873022437999999-999999887556530343211121274220447899999999999999999
Q gi|254780473|r  381 ------------RLGKVRFEVPMMWTLG-FMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIV  447 (671)
Q Consensus       381 ------------~~G~ir~~~pml~~lg-fi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiy  447 (671)
T Consensus       303 ~~~~~~~~~~~~w~~~l~~~~p~~~~~~~~i~~F~iGG~tGv~la~~~~d~~~HdTy~VvaHFH~~l~g~~~~~~~g~~Y  382 (473)
T cd01660         303 AGRLRGGKGLFGWIRALPWGDPMFLALFLAMLMFIPGGAGGIINASYQLNYVVHNTAWVPGHFHLTVGGAVALTFMAVAY  382 (473)
T ss_pred             HCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEEEEHHHHHHHHHHHHHHH
T ss_conf             11235663031120005789889999999999999998887810376766555485599975323288899999999999


Q ss_pred             HHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC------CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             96244307674-716899999999999999999999987640530300258------70057999999999999999999
Q gi|254780473|r  448 YWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE------DTTLQVYYVVALLGAVLIGIGVF  520 (671)
Q Consensus       448 yW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~------~~~~~~~n~istiGa~l~~~g~l  520 (671)
T Consensus       383 ~~~P~~~Gr~~~~~~L~~~hfwl~~iG~~l~f~pm~~~Gl~GmpRR~~~~~~~~~~~~~~~~~~n~i~siG~~l~~~g~l  462 (473)
T cd01660         383 WLVPHLTGRELAAKRLALAQPWLWFVGMTIMSTAMHVAGLLGAPRRTAEAQYGGLPAAGEWAPYQQLMAIGGTILFVSGA  462 (473)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999938866412799999999999999999999998737897746355667666527789999999999999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999997
Q gi|254780473|r  521 SFVLSFIVSF  530 (671)
Q Consensus       521 ~f~~nl~~S~  530 (671)
T Consensus       463 ~f~~ni~~Sl  472 (473)
T cd01660         463 LFLYILFRTL  472 (473)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999985