HHsearch alignment for GI: 254780473 and conserved domain: cd01660
>cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.
Probab=100.00 E-value=0 Score=913.30 Aligned_cols=448 Identities=22% Similarity=0.382 Sum_probs=419.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47999999999999999999999999998507675667766878989999999999999999999999999999986498
Q gi|254780473|r 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGA 143 (671)
Q Consensus 64 HK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGa 143 (671)
T Consensus 2 ~K~igl~y~v~~~~~~~~gg~~all~r~~~~~~~---~~~~~~~~Yn~~~T~Hg~~Mif~~~~~~~~G~~~~l~~~~~-~ 77 (473)
T cd01660 2 EKKLALAHFVVAFLALLLGGLFGLLQVLVRTGVF---PLPSSGILYYQGLTLHGVLLAIVFTTFFIMGFFYAIVARAL-L 77 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_conf 5501399999999999999999999999971886---56898327788679999999999999999999999999980-9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64005889999999999999999999971767788831347865587788520458877999999999875568999999
Q gi|254780473|r 144 RDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTII 223 (671)
Q Consensus 144 rdlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~ 223 (671)
T Consensus 78 ~~~~~prl~~~~fwl~~~g~~l~~~s~~~G~-~~~gwt~Y~PL~~~--------~~~~~g~~l~~v~~~l~~~~~~~t~~ 148 (473)
T cd01660 78 RSLFNRRLAWAGFWLMVIGTVMAAVPILLGQ-ASVLYTFYPPLQAH--------PLFYIGAALVVVGSWISGFAMFVTLW 148 (473)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCEECCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8775289999999999999999999996588-88887027842001--------45899999999999999999999999
Q ss_pred HHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72368988313315666899999999997333578889987776329801146543210132212333401257999987
Q gi|254780473|r 224 KMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLP 303 (671)
Q Consensus 224 ~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLP 303 (671)
T Consensus 149 ~~r~~~~~-~~~pl~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~-----~~~~dp~l~qhLFWffGHpeVyi~ilP 222 (473)
T cd01660 149 RWKKANPG-KKVPLATFMVVTTMILWLVASLGVALEVLFQLLPWSLGL-----VDTVDVLLSRTLFWWFGHPLVYFWLLP 222 (473)
T ss_pred HHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99636988-876199999999999999999999999999999887177-----678679999999999254689999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 999999998531056402668999999999999753322102247-87588998765334678898779999878742--
Q gi|254780473|r 304 AFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTM-GSGANVNAFFGIMTMVIAVPTGAKIFNWLFTM-- 380 (671)
Q Consensus 304 a~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~-G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl-- 380 (671)
T Consensus 223 a~g~~~~iip~~~~kpif~~~~~~~a~~~i~~l~~~vw~HHmf~~~g~~~~~~~~~~~~T~~iavPt~v~vf~~~~Tl~~ 302 (473)
T cd01660 223 AYIAWYTILPKIAGGKLFSDPLARLAFILFLLFSTPVGFHHQFADPGIGPGWKFIHMVLTFMVALPSLLTAFTVFASLEI 302 (473)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987338873100799999999999999961335315778668999999999999999876999999999875
Q ss_pred ------------CCCCCEECHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------5873022437999999-999999887556530343211121274220447899999999999999999
Q gi|254780473|r 381 ------------RLGKVRFEVPMMWTLG-FMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIV 447 (671)
Q Consensus 381 ------------~~G~ir~~~pml~~lg-fi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiy 447 (671)
T Consensus 303 ~~~~~~~~~~~~w~~~l~~~~p~~~~~~~~i~~F~iGG~tGv~la~~~~d~~~HdTy~VvaHFH~~l~g~~~~~~~g~~Y 382 (473)
T cd01660 303 AGRLRGGKGLFGWIRALPWGDPMFLALFLAMLMFIPGGAGGIINASYQLNYVVHNTAWVPGHFHLTVGGAVALTFMAVAY 382 (473)
T ss_pred HCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 11235663031120005789889999999999999998887810376766555485599975323288899999999999
Q ss_pred HHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC------CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96244307674-716899999999999999999999987640530300258------70057999999999999999999
Q gi|254780473|r 448 YWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE------DTTLQVYYVVALLGAVLIGIGVF 520 (671)
Q Consensus 448 yW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~------~~~~~~~n~istiGa~l~~~g~l 520 (671)
T Consensus 383 ~~~P~~~Gr~~~~~~L~~~hfwl~~iG~~l~f~pm~~~Gl~GmpRR~~~~~~~~~~~~~~~~~~n~i~siG~~l~~~g~l 462 (473)
T cd01660 383 WLVPHLTGRELAAKRLALAQPWLWFVGMTIMSTAMHVAGLLGAPRRTAEAQYGGLPAAGEWAPYQQLMAIGGTILFVSGA 462 (473)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999938866412799999999999999999999998737897746355667666527789999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254780473|r 521 SFVLSFIVSF 530 (671)
Q Consensus 521 ~f~~nl~~S~ 530 (671)
T Consensus 463 ~f~~ni~~Sl 472 (473)
T cd01660 463 LFLYILFRTL 472 (473)
T ss_pred HHHHHHHHHH
T ss_conf 9999999985