Query gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 671
No_of_seqs 316 out of 1284
Neff 5.0
Searched_HMMs 39220
Date Sun May 29 19:15:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780473.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02843 CyoB cytochrome o ub 100.0 0 0 1924.9 51.9 645 12-656 1-646 (646)
2 TIGR02882 QoxB cytochrome aa3 100.0 0 0 1769.7 47.8 633 21-658 9-647 (648)
3 TIGR02891 CtaD_CoxA cytochrome 100.0 0 0 1616.9 54.1 505 58-568 1-524 (524)
4 COG0843 CyoB Heme/copper-type 100.0 0 0 1395.6 54.1 563 48-617 1-566 (566)
5 MTH00153 COX1 cytochrome c oxi 100.0 0 0 1400.9 49.2 508 56-570 2-511 (511)
6 MTH00103 COX1 cytochrome c oxi 100.0 0 0 1395.3 51.1 509 54-569 2-512 (513)
7 MTH00187 COX1 cytochrome c oxi 100.0 0 0 1393.9 50.3 511 56-573 4-516 (517)
8 MTH00128 COX1 cytochrome c oxi 100.0 0 0 1388.9 51.6 510 56-572 4-515 (516)
9 MTH00182 COX1 cytochrome c oxi 100.0 0 0 1389.5 48.2 515 53-571 3-520 (525)
10 MTH00116 COX1 cytochrome c oxi 100.0 0 0 1385.8 49.3 511 55-572 3-515 (515)
11 MTH00184 COX1 cytochrome c oxi 100.0 0 0 1385.8 49.0 513 54-570 4-518 (519)
12 MTH00078 COX1 cytochrome c oxi 100.0 0 0 1383.0 49.1 519 55-581 11-532 (548)
13 MTH00167 COX1 cytochrome c oxi 100.0 0 0 1381.4 49.8 508 55-569 3-512 (513)
14 MTH00077 COX1 cytochrome c oxi 100.0 0 0 1378.8 49.0 509 56-571 4-514 (515)
15 MTH00037 COX1 cytochrome c oxi 100.0 0 0 1375.7 50.7 509 56-571 4-515 (517)
16 MTH00183 COX1 cytochrome c oxi 100.0 0 0 1374.2 50.7 507 56-569 2-510 (511)
17 MTH00007 COX1 cytochrome c oxi 100.0 0 0 1375.4 48.3 507 57-570 2-510 (511)
18 MTH00142 COX1 cytochrome c oxi 100.0 0 0 1372.4 49.0 506 57-569 2-509 (511)
19 MTH00026 COX1 cytochrome c oxi 100.0 0 0 1372.6 48.4 512 55-570 4-530 (535)
20 MTH00079 COX1 cytochrome c oxi 100.0 0 0 1365.4 48.0 503 55-565 4-508 (508)
21 MTH00048 COX1 cytochrome c oxi 100.0 0 0 1336.5 48.9 507 53-570 3-513 (514)
22 cd01663 Cyt_c_Oxidase_I Cytoch 100.0 0 0 1276.9 49.8 485 62-553 1-488 (488)
23 cd01662 Ubiquinol_Oxidase_I Ub 100.0 0 0 1258.6 49.9 500 58-562 1-501 (501)
24 cd00919 Heme_Cu_Oxidase_I Heme 100.0 0 0 1001.9 47.8 463 64-530 1-463 (463)
25 cd01660 ba3-like_Oxidase_I ba3 100.0 0 0 913.3 50.6 448 64-530 2-472 (473)
26 pfam00115 COX1 Cytochrome C an 100.0 0 0 878.6 48.9 441 64-515 1-444 (444)
27 cd01661 cbb3_Oxidase_I Cytochr 100.0 0 0 651.1 46.5 435 65-530 44-493 (493)
28 TIGR00780 ccoN cytochrome c ox 100.0 6.3E-42 0 302.7 31.9 451 62-538 3-477 (485)
29 COG3278 CcoN Cbb3-type cytochr 100.0 9.4E-40 2.4E-44 287.9 23.3 440 65-538 13-472 (482)
30 KOG4769 consensus 100.0 4.2E-45 0 324.7 -8.2 181 120-327 1-182 (182)
31 COG3256 NorB Nitric oxide redu 99.7 1.9E-10 4.9E-15 88.7 38.1 438 64-532 249-711 (717)
32 cd01661 cbb3_Oxidase_I Cytochr 98.9 1E-05 2.6E-10 56.5 26.0 231 283-535 84-334 (493)
33 cd01660 ba3-like_Oxidase_I ba3 98.0 0.00058 1.5E-08 44.6 13.6 101 420-536 204-306 (473)
34 pfam00115 COX1 Cytochrome C an 97.9 0.0025 6.3E-08 40.3 22.0 236 280-533 37-310 (444)
35 cd00919 Heme_Cu_Oxidase_I Heme 97.8 0.0014 3.5E-08 42.1 13.4 100 420-535 219-319 (463)
36 cd01662 Ubiquinol_Oxidase_I Ub 97.7 0.0039 9.9E-08 39.0 14.5 84 438-534 240-324 (501)
37 pfam12270 Cyt_c_ox_IV Cytochro 97.6 0.0006 1.5E-08 44.6 8.6 54 593-647 81-134 (135)
38 cd01663 Cyt_c_Oxidase_I Cytoch 96.3 0.078 2E-06 30.2 13.8 42 211-253 64-107 (488)
39 TIGR02891 CtaD_CoxA cytochrome 96.0 0.12 2.9E-06 29.0 14.6 239 105-388 231-493 (524)
40 MTH00037 COX1 cytochrome c oxi 95.6 0.16 4.1E-06 28.0 11.5 254 209-490 71-357 (517)
41 MTH00052 COX3 cytochrome c oxi 94.9 0.15 3.8E-06 28.3 7.1 39 338-376 144-182 (262)
42 MTH00048 COX1 cytochrome c oxi 94.8 0.27 7E-06 26.5 14.5 249 211-491 74-357 (514)
43 MTH00167 COX1 cytochrome c oxi 94.3 0.35 8.9E-06 25.8 13.0 250 210-490 72-357 (513)
44 MTH00099 COX3 cytochrome c oxi 94.1 0.22 5.6E-06 27.1 6.5 14 111-124 74-87 (261)
45 MTH00141 COX3 cytochrome c oxi 94.1 0.32 8.2E-06 26.0 7.3 38 339-376 142-179 (259)
46 pfam00510 COX3 Cytochrome c ox 93.9 0.35 8.9E-06 25.8 7.2 38 339-376 141-178 (258)
47 MTH00039 COX3 cytochrome c oxi 93.9 0.4 1E-05 25.3 7.5 38 339-376 143-180 (260)
48 MTH00155 COX3 cytochrome c oxi 93.7 0.37 9.4E-06 25.6 6.9 38 339-376 144-181 (261)
49 MTH00024 COX3 cytochrome c oxi 93.6 0.21 5.3E-06 27.3 5.6 40 338-377 143-182 (261)
50 MTH00130 COX3 cytochrome c oxi 93.6 0.44 1.1E-05 25.1 7.2 39 338-376 143-181 (261)
51 MTH00083 COX3 cytochrome c oxi 93.4 0.33 8.4E-06 25.9 6.4 37 339-376 140-176 (256)
52 MTH00075 COX3 cytochrome c oxi 93.2 0.55 1.4E-05 24.4 7.4 38 339-376 144-181 (261)
53 MTH00189 COX3 cytochrome c oxi 93.0 0.54 1.4E-05 24.5 6.9 14 111-124 73-86 (260)
54 MTH00118 COX3 cytochrome c oxi 92.3 0.72 1.8E-05 23.6 6.9 38 339-376 144-181 (261)
55 TIGR02897 QoxC cytochrome aa3 71.3 5.9 0.00015 17.4 8.0 76 149-242 7-89 (190)
56 PRK11099 putative inner membra 71.3 5.9 0.00015 17.4 12.7 94 433-532 288-383 (398)
57 KOG4768 consensus 69.2 0.89 2.3E-05 23.0 -0.8 62 56-125 3-68 (796)
58 pfam05976 consensus 69.0 6.6 0.00017 17.1 8.0 26 284-309 252-277 (706)
59 pfam11070 DUF2871 Protein of u 64.8 7.9 0.0002 16.5 9.8 119 397-527 8-128 (131)
60 PRK13165 cytochrome c-type bio 62.4 8.7 0.00022 16.2 4.2 34 623-656 14-47 (161)
61 pfam04332 DUF475 Protein of un 61.1 9.2 0.00023 16.1 7.7 111 46-172 9-133 (294)
62 PRK13150 cytochrome c-type bio 60.5 9.4 0.00024 16.0 4.6 33 623-655 14-46 (159)
63 PRK10642 proline/glycine betai 57.8 10 0.00027 15.7 11.6 74 59-144 6-87 (490)
64 pfam08374 Protocadherin Protoc 57.5 9.6 0.00024 16.0 2.6 11 547-557 78-88 (223)
65 TIGR01191 ccmC heme exporter p 56.5 9 0.00023 16.2 2.3 52 325-383 24-77 (185)
66 PRK13254 cytochrome c-type bio 48.5 14 0.00037 14.7 4.0 35 622-656 13-47 (149)
67 PRK13159 cytochrome c-type bio 44.6 17 0.00042 14.4 3.7 33 624-656 15-47 (156)
68 TIGR02921 PEP_integral PEP-CTE 43.0 18 0.00045 14.2 11.9 127 285-413 9-161 (952)
69 TIGR00804 nupC nucleoside tran 42.8 17 0.00044 14.2 2.1 188 285-536 144-341 (425)
70 CHL00035 psbC photosystem II 4 40.6 19 0.00049 13.9 3.9 34 542-578 345-379 (461)
71 PRK00478 scpA segregation and 39.6 20 0.0005 13.8 3.8 35 107-141 80-115 (505)
72 KOG4320 consensus 39.5 20 0.0005 13.8 9.0 99 427-532 115-222 (253)
73 pfam03842 Silic_transp Silicon 37.8 21 0.00053 13.7 3.2 31 638-670 425-455 (513)
74 PRK09556 uhpT sugar phosphate 37.2 21 0.00054 13.6 4.7 26 71-96 27-52 (463)
75 pfam06738 DUF1212 Protein of u 37.1 15 0.00039 14.6 1.1 26 594-619 97-123 (193)
76 PRK10873 hypothetical protein; 36.3 22 0.00056 13.5 6.9 63 459-536 65-127 (131)
77 pfam01654 Bac_Ubq_Cox Bacteria 34.8 23 0.00059 13.3 15.6 92 64-165 42-133 (430)
78 COG0575 CdsA CDP-diglyceride s 33.9 24 0.00061 13.2 6.9 24 513-536 206-229 (265)
79 KOG2103 consensus 33.5 21 0.00055 13.6 1.3 50 404-456 287-336 (910)
80 PRK12405 electron transport co 32.8 25 0.00064 13.1 2.7 41 500-540 179-219 (224)
81 COG2056 Predicted permease [Ge 32.7 25 0.00064 13.1 4.5 12 299-310 193-204 (444)
82 TIGR02139 permease_CysT sulfat 32.6 25 0.00064 13.1 4.6 31 504-534 234-265 (265)
83 TIGR03039 PS_II_CP47 photosyst 32.5 25 0.00065 13.1 5.8 20 599-618 450-469 (504)
84 KOG4664 consensus 31.7 23 0.00058 13.4 1.2 29 409-437 69-97 (261)
85 PRK09796 cellobiose/arbutin/sa 31.6 26 0.00067 13.0 6.5 36 339-374 231-267 (472)
86 pfam03100 CcmE CcmE. CcmE is t 31.5 26 0.00067 13.0 4.4 33 623-655 13-45 (130)
87 COG5617 Predicted integral mem 31.5 26 0.00067 13.0 6.3 159 129-312 122-295 (801)
88 PRK13700 conjugal transfer pro 30.6 12 0.00032 15.2 -0.3 13 227-239 169-181 (732)
89 PRK11273 glpT sn-glycerol-3-ph 30.3 27 0.0007 12.9 6.0 65 462-537 381-446 (452)
90 TIGR00538 hemN oxygen-independ 29.6 9.7 0.00025 15.9 -1.0 26 546-571 224-252 (462)
91 KOG2766 consensus 29.5 21 0.00053 13.7 0.7 27 446-472 242-272 (336)
92 pfam01299 Lamp Lysosome-associ 27.1 28 0.0007 12.8 1.0 18 627-645 285-302 (305)
93 COG5346 Predicted membrane pro 26.3 32 0.00082 12.4 5.7 31 599-629 85-115 (136)
94 COG1928 PMT1 Dolichyl-phosphat 25.8 30 0.00076 12.6 1.0 101 551-652 446-588 (699)
95 pfam12072 DUF3552 Domain of un 25.4 33 0.00085 12.3 2.5 19 72-90 3-21 (201)
96 COG4664 FcbT3 TRAP-type mannit 25.0 34 0.00086 12.2 3.5 30 371-400 318-350 (447)
97 PRK10050 curli assembly protei 24.5 35 0.00088 12.2 1.3 12 275-286 28-39 (138)
98 TIGR01946 rnfD electron transp 24.4 35 0.00089 12.2 5.8 60 193-257 23-86 (346)
99 PRK10847 hypothetical protein; 23.9 35 0.0009 12.1 11.5 49 446-495 88-157 (219)
100 COG2332 CcmE Cytochrome c-type 23.9 35 0.0009 12.1 3.9 37 622-658 13-49 (153)
101 pfam10643 Cytochrome-c551 Phot 23.8 36 0.00091 12.1 5.5 58 434-495 13-76 (213)
102 PRK13681 hypothetical protein; 23.7 31 0.0008 12.5 0.8 18 399-416 13-30 (35)
103 pfam09904 DUF2131 Uncharacteri 22.4 29 0.00074 12.7 0.4 12 484-495 5-16 (67)
104 TIGR02534 mucon_cyclo muconate 21.7 33 0.00084 12.3 0.5 202 377-602 120-356 (369)
105 TIGR03144 cytochr_II_ccsB cyto 21.6 39 0.001 11.8 15.7 122 199-339 99-228 (243)
106 pfam03839 Sec62 Translocation 21.5 40 0.001 11.8 7.4 20 596-615 100-119 (217)
107 TIGR02847 CyoD cytochrome o ub 21.2 40 0.001 11.7 4.4 16 323-338 34-49 (99)
108 pfam06472 ABC_membrane_2 ABC t 21.0 40 0.001 11.7 3.5 17 60-76 20-36 (282)
109 pfam05940 NnrS NnrS protein. T 21.0 40 0.001 11.7 25.5 290 112-477 43-338 (379)
110 pfam04483 DUF565 Protein of un 20.7 41 0.001 11.7 4.8 45 31-75 9-53 (60)
111 PRK09609 hypothetical protein; 20.5 41 0.0011 11.7 9.4 92 362-459 13-108 (308)
No 1
>TIGR02843 CyoB cytochrome o ubiquinol oxidase, subunit I; InterPro: IPR014207 This entry represents subunit 1 (CyoB) of the cytochrome o terminal oxidase complex, which is a component of the aerobic respiratory chain that reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilise cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant..
Probab=100.00 E-value=0 Score=1924.88 Aligned_cols=645 Identities=68% Similarity=1.242 Sum_probs=640.5
Q ss_pred HCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02335214657573799999999999999999997506332344303000014799999999999999999999999999
Q gi|254780473|r 12 FGRLTINSIPYNIPIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRL 91 (671)
Q Consensus 12 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~w~~lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~ 91 (671)
|||||+||+|+||||++.+.+.+.+.+++++++|||+|||+|||+||+|||||||||+||+++|++|++||+.||+|||.
T Consensus 1 fGKLt~~~~~~~ePi~~~~~~~~~~~~~~~~~~it~~~kW~~LW~eW~ttVDHKkIG~MYi~~a~vMLlRGFaDAimmR~ 80 (646)
T TIGR02843 1 FGKLTLEAIPLHEPIIMVTLVAVALGGLAVLGAITYLRKWGYLWNEWLTTVDHKKIGIMYIIVALVMLLRGFADAIMMRT 80 (646)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98654200033662999999999999999999999975247765076303066135689999999997423688999999
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85076756677668789899999999999999999999999999999864986400588999999999999999999997
Q gi|254780473|r 92 QQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLF 171 (671)
Q Consensus 92 qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~ 171 (671)
|||.+.++..|||+|+||||+||+||++||||+|||++.|++|++|||||||||+|||.+|++|||++..|++|+++|+.
T Consensus 81 qqala~g~~~GyL~p~HyDqiFtAHGViMIFF~Amp~~~GL~N~~vPLQIGARDVAFPflN~lSFWl~~~gA~L~~~SL~ 160 (646)
T TIGR02843 81 QQALASGESEGYLPPEHYDQIFTAHGVIMIFFVAMPLVVGLMNLVVPLQIGARDVAFPFLNSLSFWLTVVGAILVNISLG 160 (646)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99996368899768642111221224878889899999999876621014722343566766899999999999999987
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 17677888313478655877885204588779999999998755689999997236898831331566689999999999
Q gi|254780473|r 172 IGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIA 251 (671)
Q Consensus 172 ~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~ 251 (671)
+|+++++||.+|||||+.+|||++|+|||+|+||++|+||++++|||++||+|||||||++||||+|+|+++||++|++.
T Consensus 161 ~G~FA~tGWlAYPPLS~~~ySP~vGvDYyiW~LqiSG~GtlL~giNf~vTi~KMR~pGM~lm~mPvF~W~~l~~~iLI~~ 240 (646)
T TIGR02843 161 VGEFAQTGWLAYPPLSELQYSPGVGVDYYIWALQISGIGTLLTGINFLVTIIKMRAPGMTLMKMPVFTWTSLCSNILIVA 240 (646)
T ss_pred HCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 40022168522687566778989741488898898568999888999998887436775300362788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 73335788899877763298011465432101322123334012579999879999999985310564026689999999
Q gi|254780473|r 252 AFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATL 331 (671)
Q Consensus 252 a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~ 331 (671)
+||+||+++.||.+|||+|+||||++.|||+|+|.||.|.||||||||++||+||++|||++|||+||||||++||||++
T Consensus 241 ~FPiLT~tL~LLtlDRYlg~hFFT~~~GGn~MmYvNLiW~WGHPEVYiLiLP~FG~fSEv~aTFS~K~LFGY~smV~A~~ 320 (646)
T TIGR02843 241 SFPILTATLALLTLDRYLGMHFFTNEAGGNPMMYVNLIWIWGHPEVYILILPAFGIFSEVVATFSSKRLFGYTSMVWATI 320 (646)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEHHHHHHHCCCCEEEEEEECCCCCEECEECCCCCCCCCCCHHHHHHHH
T ss_conf 81799999999987887276300230588722110020223796446453144440001000035766664179999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999753322102247875889987653346788987799998787425873022437999999999999887556530
Q gi|254780473|r 332 AITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLL 411 (671)
Q Consensus 332 ~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~l 411 (671)
+|.+|||.||.||+||||.++++|++||++||+||||||||+||||+||||||+|+++||||++||+.+|++||+|||++
T Consensus 321 ~I~~LSF~VWlHHFFTMG~g~~VNaFFGi~TmIIaiPTGvKiFnWLFTmYkGri~f~~p~LW~~GF~~tF~iGGmTGVLl 400 (646)
T TIGR02843 321 AITILSFLVWLHHFFTMGSGANVNAFFGIATMIIAIPTGVKIFNWLFTMYKGRIRFETPMLWTIGFLVTFTIGGMTGVLL 400 (646)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999876541126887533567767887753156215775656654151575334899999999866456777887
Q ss_pred CCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 34321112127422044789999999999999999996244307674716899999999999999999999987640530
Q gi|254780473|r 412 AVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTR 491 (671)
Q Consensus 412 A~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpR 491 (671)
|.+++|+++|||.|+|||||++++||++||+|||+.|||||.||++|||||||.+||||++||.++|+|+|.+|++||+|
T Consensus 401 a~P~~DF~lHNSLFLiAHFHnvIIGGvvFG~~AG~~yWFPK~FGF~L~e~lG~~sFWcW~~GF~~AFmPlY~LG~mG~tR 480 (646)
T TIGR02843 401 AVPPADFVLHNSLFLIAHFHNVIIGGVVFGYLAGLTYWFPKAFGFKLNEKLGKASFWCWLIGFYLAFMPLYVLGLMGMTR 480 (646)
T ss_pred HHCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52343503122688887770312488899999878874001257542166637898999999999998888875303666
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 30025870057999999999999999999999999999744953568999899997101269981199894759607845
Q gi|254780473|r 492 RLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTI 571 (671)
Q Consensus 492 R~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~ 571 (671)
|.++|++++|+|+..++.+|+.++.+|+++++.|+++|+|+|++++|.+|||||||||||+||||||.||||.+|+|+++
T Consensus 481 RL~~~~~~~w~~~l~~a~~Ga~lI~~Gi~~~~~q~~vSi~~R~~~~d~~GD~W~gRTLEWs~~SP~P~YNFA~~P~v~~~ 560 (646)
T TIGR02843 481 RLNHYDNPEWQPYLIVAAIGAVLIAIGILCQLLQIFVSIRDRDQLRDTTGDPWNGRTLEWSTSSPPPFYNFAVIPKVEDR 560 (646)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65331040135899999999999999999999999988872355102468887762312346877876665446621540
Q ss_pred CCHHHHHHCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf 50477555397677-67873661899885899999999999999999999999999999999999998314898455678
Q gi|254780473|r 572 DAWEHMKNRGYRYP-SEGFMPIHMPSNTATGIILAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAK 650 (671)
Q Consensus 572 d~~~~~k~~~~~~~-~~~~~~ihmP~~t~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (671)
|+||++|++|+..+ +++|++|||||||..|+++|.++.++|||+|||+||++++|+++++++.+.||+++|.||||++|
T Consensus 561 D~~w~~K~~G~~~~~~~~y~~IHmP~nT~~G~~i~~f~~~~GFA~vWhIWWl~~~~~~g~i~~~i~~s~~~d~dYyv~a~ 640 (646)
T TIGR02843 561 DAYWDMKKKGVATKRPKKYEDIHMPKNTAAGFIIAAFSLVLGFALVWHIWWLAIIGLVGIIATLIVRSFDDDVDYYVPAE 640 (646)
T ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHH
T ss_conf 55788765023341101201024889605899999999999999999999999999999999999998415887422186
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780473|r 651 DVAFSE 656 (671)
Q Consensus 651 ~~~~~e 656 (671)
||+|+|
T Consensus 641 ~v~~iE 646 (646)
T TIGR02843 641 EVKKIE 646 (646)
T ss_pred HHHCCC
T ss_conf 440169
No 2
>TIGR02882 QoxB cytochrome aa3 quinol oxidase, subunit I; InterPro: IPR014233 This entry represents subunit I of the aa3-type quinone oxidase, one of several terminal oxidases found in bacteria . This complex couples the oxidation of reduced quinones to the reduction of molecular oxygen to water, and the pumping of protons to form a proton gradient utilised for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms at the active site..
Probab=100.00 E-value=0 Score=1769.74 Aligned_cols=633 Identities=51% Similarity=0.986 Sum_probs=624.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 57573799999999999999999997506332344303000014799999999999999999999999999850767566
Q gi|254780473|r 21 PYNIPIVLGTFFVVALVGVSIIFAITYYRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGG 100 (671)
Q Consensus 21 p~~~~~~~~~~~~~~~~~~~~~~~~t~~~~w~~lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~ 100 (671)
|.+||++..+.+++++..++++..||||||||||||||+|||||||||+||+++|++|++|||+||++||.|+..|+
T Consensus 9 p~g~p~i~~a~va~~l~~ig~v~viTYFK~W~yLw~EWlTtVDHKkIGvMYiIcAvLMl~RGG~Dall~R~QltvPd--- 85 (648)
T TIGR02882 9 PKGEPMIYAADVAIALVVIGVVVVITYFKKWKYLWNEWLTTVDHKKIGVMYIICAVLMLFRGGVDALLMRAQLTVPD--- 85 (648)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC---
T ss_conf 89753565887789999988998776555446778631242340023689999999998512577999987606886---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 77668789899999999999999999999999999999864986400588999999999999999999997176778883
Q gi|254780473|r 101 EGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGW 180 (671)
Q Consensus 101 ~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GW 180 (671)
+.||++||||++||.||++||+|+|||+++|++|++|||||||||+|||+||++||||+.+|++|.|+|+.+||+||+||
T Consensus 86 ~~FLda~HYNEiFtTHGviMI~FMAMpFI~GL~N~VvPLQIGARDVAFP~LN~lSFWLfF~G~~LFNiSFviGGSP~AGW 165 (648)
T TIGR02882 86 NKFLDAQHYNEIFTTHGVIMILFMAMPFIIGLMNIVVPLQIGARDVAFPVLNALSFWLFFAGAMLFNISFVIGGSPDAGW 165 (648)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHH
T ss_conf 20002234331222225889899888999857754302324761000002546889999998998753410248886331
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13478655877885204588779999999998755689999997236898831331566689999999999733357888
Q gi|254780473|r 181 LAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATL 260 (671)
Q Consensus 181 t~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al 260 (671)
|.|.||+++++|+++|++||.+++|++|+||+++||||++||+|||+|||++||||+|||+.++|++++++|||+||+|+
T Consensus 166 T~Y~PLAG~EFS~g~G~NYY~~AlQISGiGTL~TGINF~VTIlk~raPgM~lM~MPMFT~t~lIT~~iii~AFP~LTvAL 245 (648)
T TIGR02882 166 TNYFPLAGNEFSEGVGVNYYAVALQISGIGTLMTGINFLVTILKMRAPGMKLMKMPMFTWTILITTVIIIFAFPVLTVAL 245 (648)
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 34787787543678760599899997035677644788888774178852011373679999999998888341789999
Q ss_pred HHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877763298011465432101322123334012579999879999999985310564026689999999999997533
Q gi|254780473|r 261 FLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTV 340 (671)
Q Consensus 261 ~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~V 340 (671)
++.++||.++|+||+.+.||-+|||.||||.||||||||+|||||||+|||+||||||||||||+||.|++.|++|||.|
T Consensus 246 ~l~T~DR~F~T~FFT~a~GGM~MlWANlFWiWGHPEVYIvILPAFGIyS~iisTFa~k~LfGy~sMV~s~v~Ia~LSF~V 325 (648)
T TIGR02882 246 ALMTLDRLFDTAFFTVADGGMDMLWANLFWIWGHPEVYIVILPAFGIYSEIISTFAQKRLFGYKSMVASIVGIAFLSFVV 325 (648)
T ss_pred HHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98633134402310002687546876421113685478883054230333320235431021489999999999999998
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 22102247875889987653346788987799998787425873022437999999999999887556530343211121
Q gi|254780473|r 341 WLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTL 420 (671)
Q Consensus 341 W~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~l 420 (671)
|+||+||+|.++.+|+.||++||+|+||||||+||||.||||||+||++||||+++||++|++||+||||||..++|+|.
T Consensus 326 WVHHFFTMG~Gal~NS~FSItTM~IaiPTGvKiFNWLlTl~KGkI~F~tpML~SlAFIP~F~iGGVTGVMLa~AsADYQY 405 (648)
T TIGR02882 326 WVHHFFTMGAGALVNSIFSITTMAIAIPTGVKIFNWLLTLYKGKIRFTTPMLYSLAFIPNFVIGGVTGVMLAMASADYQY 405 (648)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 88644204771467669999889865055057888888761674354116899998853445220689999997544345
Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC-CC
Q ss_conf 27422044789999999999999999996244307674716899999999999999999999987640530300258-70
Q gi|254780473|r 421 HNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE-DT 499 (671)
Q Consensus 421 HnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~-~~ 499 (671)
|||||+||||||+++.|+||+++||+.||+|||+|.+||||++||.||...||||++|+|||++||+||+||.|+|. ..
T Consensus 406 HNt~FLvAHFHyvli~GvVFA~~AGL~ywyPKM~G~~LNE~lgKW~FW~~~IGF~~cF~P~y~lGL~G~~RR~YTY~~~~ 485 (648)
T TIGR02882 406 HNTYFLVAHFHYVLIAGVVFACLAGLIYWYPKMFGYLLNERLGKWAFWLFMIGFNVCFFPMYILGLDGMARRLYTYSEAS 485 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 55789888887687777999998668886177610355200221567788998888752378743789862012421666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCC-CCCCCCCCCCEECCCCCHHH
Q ss_conf 0579999999999999999999999999997449535689998999--97101269981-19989475960784550477
Q gi|254780473|r 500 TLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD--GRTLEWSISSP-SPQYNFAFTPIVSTIDAWEH 576 (671)
Q Consensus 500 ~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~~~~~dPW~--~~tLEW~~~sP-pp~~nF~~~P~v~~~d~~~~ 576 (671)
+|.|+|++|++|+.++++|+++.++|+++|.|+++ ||.++|||| ||||||+|.|| ||+|||+.+|+|+|.|++||
T Consensus 486 Gw~~LNl~s~~G~~L~~iGFi~Lv~~I~YS~~~~~--R~~tgD~W~glgRtLEWaT~~~~~~~YNFavTP~~~~~daf~~ 563 (648)
T TIGR02882 486 GWTPLNLVSTVGAVLMAIGFILLVYNIYYSARKAP--REVTGDPWNGLGRTLEWATASPIPPKYNFAVTPVVEDVDAFWD 563 (648)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 73488999999999998779888876776200255--4578987310000022213689875567655783265267888
Q ss_pred HHHCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHH
Q ss_conf 55539767--7678736618998858999999999999999999999999999999999999983148984556789999
Q gi|254780473|r 577 MKNRGYRY--PSEGFMPIHMPSNTATGIILAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDVAF 654 (671)
Q Consensus 577 ~k~~~~~~--~~~~~~~ihmP~~t~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (671)
+|+++.+. ++|+++|||||+||+.|++++.+.++.||++|++.+-.+++|.++++.|++.||||+|+|||||+|||+|
T Consensus 564 ~K~~g~~~~~~~~~~~dIHMP~Nsg~~~~~~~~~~i~GFflvF~~~~~~ivg~~gI~g~liyRsF~~D~Gy~I~~~Ei~~ 643 (648)
T TIGR02882 564 MKKKGYKLYLDEEDLKDIHMPNNSGVSFWLAVFFFIAGFFLVFKVFALAIVGALGILGTLIYRSFEKDDGYHIPAEEIAE 643 (648)
T ss_pred HHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 87514410020468886548898853899999999888999999999999999999998887531047860337799999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780473|r 655 SEEV 658 (671)
Q Consensus 655 ~e~~ 658 (671)
+|++
T Consensus 644 ~E~~ 647 (648)
T TIGR02882 644 TEKK 647 (648)
T ss_pred HHHC
T ss_conf 8741
No 3
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I; InterPro: IPR014241 This entry represents the bacterial-type cytochrome c oxidase subunit I (CtaD, CoxA, CaaA). Cytochrome c oxidase is the component of the respiratory chain that catalyses the reduction of oxygen to water. Subunits I, II and III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A centre of subunit II and heme a of subunit I to the bimetallic centre formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer activity. In the bacilli an apparent split (paralogism) has created a sister clade (IPR014233 from INTERPRO) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c..
Probab=100.00 E-value=0 Score=1616.87 Aligned_cols=505 Identities=49% Similarity=0.970 Sum_probs=499.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 30000147999999999999999999999999998507675667-76687898999999999999999999-99999999
Q gi|254780473|r 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGE-GYLDAHHYDQIFTAHGVIMIFFVAMP-MITGIMNF 135 (671)
Q Consensus 58 wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~-~~l~~~~Ynq~~T~HG~~Mif~~a~p-~~~G~~n~ 135 (671)
|+|||||||||+||+++++.++++||++|++||+||+.|+ + +++++|+|||+||+||++|||++++| ++.||+||
T Consensus 1 wl~tvDHK~IG~lY~~~~~~fFl~GG~lAll~R~qLa~P~---~F~~~~~~~YNq~fT~HG~~M~Flf~~Pa~~~gFgNy 77 (524)
T TIGR02891 1 WLTTVDHKRIGILYLVTAFAFFLVGGVLALLMRAQLATPG---NFTFMDAETYNQLFTMHGTIMIFLFAVPAILAGFGNY 77 (524)
T ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9325210799999999999999999999999999863898---6012388789999999999999999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99986498640058899999999999999999999717-----6778-88313478655877885204588779999999
Q gi|254780473|r 136 VVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG-----EFAS-VGWLAYPPLSGISYSPGVGVDYYIWGLQIAGI 209 (671)
Q Consensus 136 lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g-----~~~~-~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gi 209 (671)
++||||||||||||||||+|||++++|+++++.|++.+ ++|| +|||+|||||+.++|||.|+|+|++|+.+.|+
T Consensus 78 l~PLMiGArDmAFPRLNa~syW~yl~G~~l~~~s~~~~l~~~G~aP~~~GWt~Y~PLs~~~~~~G~~~d~~llg~~~~G~ 157 (524)
T TIGR02891 78 LLPLMIGARDMAFPRLNAFSYWLYLFGGLLLLASFFTGLFGIGGAPDGTGWTMYPPLSLLSYSPGVGVDLWLLGLHLLGI 157 (524)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 86886388876402267899999999999999998733120365756675323464123666888439999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC--CCCHHHHHH
Q ss_conf 998755689999997236898831331566689999999999733357888998777632980114654--321013221
Q gi|254780473|r 210 GTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHL--GGNPMMYIN 287 (671)
Q Consensus 210 gsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~--GGdplL~q~ 287 (671)
||+++++||++||+||||||||++|||+|+|++++||+++++|+|+|++|++||++||++|++|||++. ||||+||||
T Consensus 158 Ssi~ga~NfivTil~~RAPGMtl~~mPlFvW~~L~ts~~~l~A~P~L~~a~~ll~ldR~~G~~FF~pa~VmGGDP~LwQH 237 (524)
T TIGR02891 158 SSILGAVNFIVTILKMRAPGMTLMRMPLFVWGILVTSILILLAFPVLAAALILLLLDRLFGTHFFDPARVMGGDPLLWQH 237 (524)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHH
T ss_conf 99998888998655058857973331188999999999999997799999999999985387642154650686357877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 23334012579999879999999985310564026689999999999997533221022478758899876533467889
Q gi|254780473|r 288 LIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAV 367 (671)
Q Consensus 288 LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaI 367 (671)
||||||||||||++||++|++|||+|||||||+||||.||+|+++|+++||.||+|||||+|+++..+.+|+.+||+|||
T Consensus 238 LFWFFGHPEVYI~~LPa~Gi~S~i~ptFaRkp~FGY~~~V~a~~aIg~lsf~VWaHHMFt~G~~~~~~~~Fs~~t~~iAv 317 (524)
T TIGR02891 238 LFWFFGHPEVYIIVLPAFGIISEIIPTFARKPIFGYRAMVYATVAIGFLSFGVWAHHMFTTGIPPLALAFFSAATMLIAV 317 (524)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHHHHHHHHHHHHHHH
T ss_conf 64440270678998369999999968753898632899999999999998664223301126442589999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87799998787425873022437999999999999887556530343211121274220447899999999999999999
Q gi|254780473|r 368 PTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIV 447 (671)
Q Consensus 368 PTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiy 447 (671)
|||||||||++|||+||+|+++||+|++|||++|++||+|||++|++|.|+|+|||||||||||||++||.+|+++||+|
T Consensus 318 PTgvKvFnWiaTlw~G~i~f~~PMLf~lGFi~~F~iGGLTGvmlA~~p~D~~~HDTYFVVAHFHYVl~Gg~vF~~~aa~Y 397 (524)
T TIGR02891 318 PTGVKVFNWIATLWGGSIRFKTPMLFALGFIFLFVIGGLTGVMLASVPLDWQLHDTYFVVAHFHYVLVGGSVFALFAAIY 397 (524)
T ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54799999999987685123157899999999999878899999877605333575000357999999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC----CC-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9624430767471689999999999999999999998764053030025----87-005799999999999999999999
Q gi|254780473|r 448 YWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQY----ED-TTLQVYYVVALLGAVLIGIGVFSF 522 (671)
Q Consensus 448 yW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y----~~-~~~~~~n~istiGa~l~~~g~l~f 522 (671)
||+||+|||+|||||||+|||+.++|||++|+|||++|++|||||++|| ++ .+|+.+|++||+||+++++|++++
T Consensus 398 YWfPk~TGRm~~erlG~~hFwl~f~GfN~tFfPmh~lGl~GMPRR~~tYe~f~~~~~Gf~~lN~~St~Gaf~la~g~L~f 477 (524)
T TIGR02891 398 YWFPKVTGRMYNERLGRWHFWLTFVGFNLTFFPMHLLGLLGMPRRYYTYEYFIPPQMGFATLNLISTIGAFILAAGVLLF 477 (524)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87222025767344788999999999999999999985278986343054006755772177799999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCC-C-CCCCCC-CCCCCCCCCCCCCC-CEE
Q ss_conf 9999999744953568999899-9-971012-69981199894759-607
Q gi|254780473|r 523 VLSFIVSFLNRSKLQDTIGDPW-D-GRTLEW-SISSPSPQYNFAFT-PIV 568 (671)
Q Consensus 523 ~~nl~~S~~~~~~~~~~~~dPW-~-~~tLEW-~~~sPpp~~nF~~~-P~v 568 (671)
++|+++|.|+|+|++| ||| + |+|||| +++||||+|||++. |+|
T Consensus 478 ~~~~~~~~~~G~~a~~---NPW~g~A~TLEW~~~~sPPp~~nf~~~~P~v 524 (524)
T TIGR02891 478 LVNVIWSLRKGPKAGA---NPWEGAATTLEWQATSSPPPAHNFESLLPVV 524 (524)
T ss_pred HHHHHHHHHCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999615887898---8644467863334668878988875567749
No 4
>COG0843 CyoB Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]
Probab=100.00 E-value=0 Score=1395.63 Aligned_cols=563 Identities=54% Similarity=1.021 Sum_probs=549.4
Q ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 06332344303000014799999999999999999999999999850767566776687898999999999999999999
Q gi|254780473|r 48 YRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMP 127 (671)
Q Consensus 48 ~~~w~~lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p 127 (671)
+++| ++|++|++|+||||||++|+++|++++++||++|++||+||+.|. +++++++|+|||++|+||++|+|+++||
T Consensus 1 ~~~~-~~~~~~~~s~dhk~Igi~Y~i~a~~~~l~gg~~a~~mR~~la~p~--~~~~l~~~~Yn~~~T~HGviMif~~~~p 77 (566)
T COG0843 1 FGKW-YLWKRWLTSTDHKDIGILYLILAIFFLLVGGALALLMRLELATPS--GSQFLDPQLYNQILTLHGVIMIFFFAMP 77 (566)
T ss_pred CCCC-CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9845-421677750357998899999999999999999999999985578--8888898998799999899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999998649864005889999999999999999999971-7677888313478655877885204588779999
Q gi|254780473|r 128 MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFI-GEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQI 206 (671)
Q Consensus 128 ~~~G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~-g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l 206 (671)
++.||+||++|+||||||+||||+|++|||+++.|+++++.|+++ |+++++|||+|||||..++| |+|+|+|++|+++
T Consensus 78 ~i~Gf~n~~vpl~iGa~d~afPrlN~isFWl~~~g~~ll~~s~~v~gg~~~~GWt~YpPLs~~~~s-g~g~dl~~~~l~l 156 (566)
T COG0843 78 AIGGFANYLVPLMIGARDVAFPRLNAISFWLLVVGAILLVTSFFVPGGAADTGWTAYPPLSAISYS-GPGVDLFILGLHL 156 (566)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCC-CCCHHHHHHHHHH
T ss_conf 999999999898718975214777878999999999999999961678878622765775357888-7422899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHH
Q ss_conf 99999875568999999723689883133156668999999999973335788899877763298011465432101322
Q gi|254780473|r 207 AGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYI 286 (671)
Q Consensus 207 ~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q 286 (671)
+++||+++++||++|++|||+|||+++|||+|+|++++|++++++++|+|+++++++++||++|++||+++.||||+|||
T Consensus 157 ~gi~s~l~~infivTi~~mRapgm~~~kmPlf~w~~l~t~~L~lla~P~L~~~~~~llldr~~gt~fF~~~~gG~p~L~q 236 (566)
T COG0843 157 LGIGSLLGAINFIVTILNMRAPGMTMMKMPLFTWSILITAILILLAFPVLAAALTMLLLDRNFGTSFFTPAGGGDPLLYQ 236 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 99999999999999999985599970017489899999999999980799999999999998398341567898779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 12333401257999987999999998531056402668999999999999753322102247875889987653346788
Q gi|254780473|r 287 NLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIA 366 (671)
Q Consensus 287 ~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~Ia 366 (671)
|||||||||||||++|||+|++||++|+++|||+|||++|++|+++|+++|+.||+|||||+|++++.|.+|+++||+||
T Consensus 237 hLFWffGHPeVYi~iLPafGi~s~iip~~a~k~lFgy~~m~~a~~~i~ilSf~Vw~HHmft~G~~~~~~~~f~~~Tm~Ia 316 (566)
T COG0843 237 HLFWFFGHPEVYILILPAFGIVSEIIPTFARKPLFGYTSMVYAFVAIGILSFIVWAHHMFTTGLPADLRAFFSITTMIIA 316 (566)
T ss_pred HHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999289611034776778999999998388852088999999999999866738663166886899999999999997
Q ss_pred HHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98779999878742587302243799999999999988755653034321112127422044789999999999999999
Q gi|254780473|r 367 VPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGI 446 (671)
Q Consensus 367 IPTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagi 446 (671)
||||+|+|||++|+|+||+|+++||+|+++|+.+|++||+|||++|++++|.++||||||||||||++.++++|+++||+
T Consensus 317 iPTgikiFnW~~t~~~G~i~~~~pml~~~~fi~~F~iGGvTGv~la~~~~d~~vhnTy~VVgHFH~vl~~~~vf~~~ag~ 396 (566)
T COG0843 317 IPTGIKIFNWLATLWGGRIRFKTPMLFAIGFIVTFVIGGVTGVLLASIPLDFVVHNTYFVVGHFHYVLGGGVVFGLFAGI 396 (566)
T ss_pred HHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCEECCCEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 54466999999999667322365199999999998643502897156664621327358861133447989999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 996244307674716899999999999999999999987640530300258-7005799999999999999999999999
Q gi|254780473|r 447 VYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE-DTTLQVYYVVALLGAVLIGIGVFSFVLS 525 (671)
Q Consensus 447 yyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~-~~~~~~~n~istiGa~l~~~g~l~f~~n 525 (671)
|||+||++||++|||++|+|||++++|++++|+|||++|++|||||+++|+ +++|+++|+++++|++++++|++++++|
T Consensus 397 ~~w~pk~tGr~~~e~~gk~~f~~~~iG~~l~f~pm~~lGl~GmpRR~~~y~~~~~~~~~n~i~tvGa~il~~g~~~~~~~ 476 (566)
T COG0843 397 YYWFPKMTGRMLNERLGKLHFWLWFIGFNLTFFPMHVLGLMGMPRRYATYPGVPGFTPLNVIATVGAFILGLGVLLFLLN 476 (566)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99989982973468898899999999899999999998427884004315998521478999986789999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99997449535689998999971012699811998947596-07845504775553976776787366189988589999
Q gi|254780473|r 526 FIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTP-IVSTIDAWEHMKNRGYRYPSEGFMPIHMPSNTATGIIL 604 (671)
Q Consensus 526 l~~S~~~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P-~v~~~d~~~~~k~~~~~~~~~~~~~ihmP~~t~~~~~~ 604 (671)
+++|+++|| ++.++|||+++||||++|||||.|||+++| +|+++|+.+|.|+++.....++. +||||+|+.+|+..
T Consensus 477 ~v~s~~~g~--~~~~~~pw~~~tlew~tssppp~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~ 553 (566)
T COG0843 477 LVVSLRKGK--RDATGDPWGARTLEWATSSPPPFYNFAELPYKVRASDAVYDNKSPGLYERYPSG-DIHMPYNTGEPFMI 553 (566)
T ss_pred HHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCEECCCC-CCCCCCCCCCCHHH
T ss_conf 999997254--435789988766333679999755666798346404135542577521004664-33567888752477
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780473|r 605 AALSIVFSFAMVW 617 (671)
Q Consensus 605 ~~~~~~~~f~~~~ 617 (671)
+.+...++++.+|
T Consensus 554 ~~~~~~~~~~~~~ 566 (566)
T COG0843 554 SKFSLFFGFGLIW 566 (566)
T ss_pred HHHHHHHHCCCCC
T ss_conf 7777752302569
No 5
>MTH00153 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1400.87 Aligned_cols=508 Identities=37% Similarity=0.758 Sum_probs=499.5
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 303000014799999999999999999999999999850767566776687898999999999999999999999-9999
Q gi|254780473|r 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIMN 134 (671)
Q Consensus 56 ~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n 134 (671)
|+|++||||||||++|++++++++++|+++|++||+||+.|+ ..+.++|+|||++|+||++|||+++||.+. ||+|
T Consensus 2 ~~Wl~ttdHK~IG~~Ylv~~~~~~l~Gg~lalliR~eL~~Pg---~~~~~~~~YN~l~T~HG~iMiF~~vmP~l~ggfgN 78 (511)
T MTH00153 2 RRWLFSTNHKDIGTLYFIFGAWSGMVGTSLSLLIRAELGQPG---SLIGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGN 78 (511)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 750332678999999999999999999999999999981885---45687788999999999999999999999888899
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998649864005889999999999999999999971767788831347865587788520458877999999999875
Q gi|254780473|r 135 FVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLS 214 (671)
Q Consensus 135 ~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~ 214 (671)
|++|+|||||||||||+|++|||++++|+++++.|+++++++++|||.|||||+..++||.++|+|+++++++|+||+++
T Consensus 79 yliPl~IGA~DmAFPRLN~lSfWl~~~~~~l~~~s~~~~~g~~~GWt~YpPLS~~~~~~g~~vd~~i~~l~l~gisSilg 158 (511)
T MTH00153 79 WLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILG 158 (511)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999869962111324546589865789999999971688998871057732245788731999999999999999998
Q ss_pred HHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 56899999972368988313315666899999999997333578889987776329801146543210132212333401
Q gi|254780473|r 215 GINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294 (671)
Q Consensus 215 ~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGH 294 (671)
++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++|||++.||||+|||||||||||
T Consensus 159 siNfi~Ti~~mRapGmt~~r~Plf~Ws~l~ts~l~l~a~PvL~~a~~mll~DR~~gt~FF~~~~GGdpvL~qhLFWffgH 238 (511)
T MTH00153 159 AINFITTIINMRSSGMTLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGH 238 (511)
T ss_pred HHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHCCC
T ss_conf 99999999972867888655879999999999999999689999999987052258521167778886411002233589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2579999879999999985310-564026689999999999997533221022478758899876533467889877999
Q gi|254780473|r 295 PEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKI 373 (671)
Q Consensus 295 PeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvki 373 (671)
|||||++|||+|++||++|+++ |||+|||++|++|+++|+++|+.||+|||||+|++++.|++|+++||+||||||+|+
T Consensus 239 PEVYIliLPafGiiseii~~~s~rk~~fgy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~T~~IaiPTgikv 318 (511)
T MTH00153 239 PEVYILILPGFGMISHIISQESGKKETFGTLGMIYAMLAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKI 318 (511)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86998835318999999998618874200279999999998771222130202667877889999999998750047899
Q ss_pred HHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98787425873022437999999999999887556530343211121274220447899999999999999999962443
Q gi|254780473|r 374 FNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKA 453 (671)
Q Consensus 374 Fnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~ 453 (671)
|||++|+|+||+|+++||+|++||+.+|++||+||+++|++++|+++|||||||||||||+.+|++|++|||+|||+||+
T Consensus 319 f~wi~Tl~~g~i~~~~pml~~lgfi~~F~iGGlTGv~la~~~~D~~lHdTYfVVaHFHyVl~~g~vf~~fag~yyw~Pk~ 398 (511)
T MTH00153 319 FSWLATLHGSQLNYSPSLLWALGFVFLFTVGGLTGVVLANSSIDIILHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLF 398 (511)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99988642884677678999999999997111203542464133423274488743111356389999999999999997
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07674716899999999999999999999987640530300258700579999999999999999999999999997449
Q gi|254780473|r 454 FGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 (671)
Q Consensus 454 ~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~ 533 (671)
|||++||++||+|||++++|+|++|+|||++|++|||||+++|+| +|+.||+++|+|++++++|++++++|++.|+++|
T Consensus 399 tG~~~~e~lgk~hf~~~fiG~n~tF~Pmh~lGl~GMpRR~~~Y~~-~~~~~n~iss~Ga~i~~~~~l~f~~~~~~s~~~~ 477 (511)
T MTH00153 399 TGLTMNPKWLKIQFFIMFIGVNLTFFPQHFLGLAGMPRRYSDYPD-AYTTWNVISSLGSTISLISVLFFIFIIWESLISQ 477 (511)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 376868779999999999999999999999865999876687737-7899999999999999999999999999999628
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 5356899989999710126998119989475960784
Q gi|254780473|r 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVST 570 (671)
Q Consensus 534 ~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~ 570 (671)
||+.+ |||+++||||++|||||+|||+++|+|++
T Consensus 478 ~~a~~---npw~~~tLEW~~~sPpp~~nF~~~P~Vt~ 511 (511)
T MTH00153 478 RPVLF---SLNLSSSIEWLQNLPPAEHSYSELPLLTN 511 (511)
T ss_pred CCCCC---CCCCCCCCEECCCCCCCCCCCCCCCCCCC
T ss_conf 87889---99999985038899999768887980689
No 6
>MTH00103 COX1 cytochrome c oxidase subunit I; Validated
Probab=100.00 E-value=0 Score=1395.31 Aligned_cols=509 Identities=37% Similarity=0.765 Sum_probs=501.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 44303000014799999999999999999999999999850767566776687898999999999999999999999-99
Q gi|254780473|r 54 LWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GI 132 (671)
Q Consensus 54 lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~ 132 (671)
.||+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|+|||++|+||++|||+++||.+. ||
T Consensus 2 f~~~wl~ttdHK~IG~~Y~i~~~~~~~~G~~~alliR~eL~~Pg---~~~~~~~~YN~l~T~HG~iMIFf~vmP~l~gGf 78 (513)
T MTH00103 2 FINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPG---TLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGF 78 (513)
T ss_pred CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12154101578999999999999999999999999999880886---567888999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999986498640058899999999999999999999717677888313478655877885204588779999999998
Q gi|254780473|r 133 MNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTT 212 (671)
Q Consensus 133 ~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsl 212 (671)
+||++|+|||||||||||+|++|||++++|.++++.|+++++++++|||.|||||+..++||.++|+|+++++++|+||+
T Consensus 79 gNylvPLmIGA~DmAFPRLN~lSfWl~~~~~~ll~~S~~~~~g~~tGWt~YpPLS~~~~~~g~~vd~~i~~l~l~GiSSi 158 (513)
T MTH00103 79 GNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSI 158 (513)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998699621104278788999879999999999707888887722677433457888409999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 75568999999723689883133156668999999999973335788899877763298011465432101322123334
Q gi|254780473|r 213 LSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIW 292 (671)
Q Consensus 213 l~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~f 292 (671)
++++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++|||++.||||+|||||||||
T Consensus 159 lgsiNfi~TI~~mRapgm~~~~mplf~Ws~l~ts~lllla~PvL~~a~~mll~DR~~~t~FF~~~~GGdp~L~QhLFWff 238 (513)
T MTH00103 159 LGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFF 238 (513)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHC
T ss_conf 98899999898607888766438799999999999999983799998888750543686433677788721788889880
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 012579999879999999985310-5640266899999999999975332210224787588998765334678898779
Q gi|254780473|r 293 GHPEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGA 371 (671)
Q Consensus 293 GHPeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgv 371 (671)
|||||||++|||+|++||++|++| |||+|||++|++|+++|+++||.||+|||||+|++++.+++|+++||+||||||+
T Consensus 239 GHPEVYIliLPafGiiseii~~fs~rk~ifGy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~T~~IavPtgi 318 (513)
T MTH00103 239 GHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGV 318 (513)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89869998254178999999983278755053999999999988823440302116677734778889999997756789
Q ss_pred HHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987874258730224379999999999998875565303432111212742204478999999999999999999624
Q gi|254780473|r 372 KIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFP 451 (671)
Q Consensus 372 kiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~P 451 (671)
|+|||++|+|+||+|+++||+|++||+++|++||+||+++|++++|+++|||||||||||||+.+|++|++|||+|||+|
T Consensus 319 kvf~W~~Tl~~g~i~~~~pml~a~gfi~~F~iGGlTGv~la~~~~D~~~HdTyfVVaHFHyVl~~g~vf~~fag~yyW~P 398 (513)
T MTH00103 319 KVFSWLATLHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFP 398 (513)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999857872544799999999999986531123047630212114644244218888876999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43076747168999999999999999999999876405303002587005799999999999999999999999999974
Q gi|254780473|r 452 KAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFL 531 (671)
Q Consensus 452 k~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~ 531 (671)
|+|||++||+|||+|||++++|+|++|+|||++|++|||||+++|+| +|+.||+++|+|++++++|++++++|++.|.|
T Consensus 399 k~tG~~~~e~lg~~~f~~~fiG~n~tFfPmh~lGl~GMPRR~~dY~~-~~~~~n~iss~Ga~i~~~~~l~~~~~~~~s~~ 477 (513)
T MTH00103 399 LFSGYTLNDTWAKIHFTIMFVGVNMTFFPQHFLGLSGMPRRYSDYPD-AYTTWNTVSSMGSFISLTAVMLMIFMIWEAFA 477 (513)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98684511889999999999999999999999854899874577747-89999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 49535689998999971012699811998947596078
Q gi|254780473|r 532 NRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569 (671)
Q Consensus 532 ~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~ 569 (671)
+|||+.+ |||+++||||+++||||+|||+++|+||
T Consensus 478 ~~~~~~~---~pw~~~tLEW~~~sPpp~~nF~~~P~Vk 512 (513)
T MTH00103 478 SKREVLT---VELTTTNLEWLHGCPPPYHTFEEPTYVK 512 (513)
T ss_pred CCCCCCC---CCCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 0876789---9999998314989989987879997027
No 7
>MTH00187 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1393.89 Aligned_cols=511 Identities=38% Similarity=0.772 Sum_probs=502.9
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 303000014799999999999999999999999999850767566776687898999999999999999999999-9999
Q gi|254780473|r 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIMN 134 (671)
Q Consensus 56 ~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n 134 (671)
|+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|+|||++|+||++|||+++||.+. ||+|
T Consensus 4 ~rwl~ttdHK~IG~~Y~i~~~~~~~~G~~la~liR~eL~~p~---~~~~~~~~YN~~~T~HG~iMiF~~vmP~l~ggfgN 80 (517)
T MTH00187 4 NRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPG---TLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGN 80 (517)
T ss_pred CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 523101778999999999999999999999999999980886---45688248999899999999999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998649864005889999999999999999999971767788831347865587788520458877999999999875
Q gi|254780473|r 135 FVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLS 214 (671)
Q Consensus 135 ~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~ 214 (671)
|++|+|||||||||||+|++|||++++|+++++.|+++++++++|||.|||||+..+++|.++|+++++++++|+||+++
T Consensus 81 yliPlmiGa~DmAFPRlN~~SfWl~~~~~~ll~~S~~~~~g~~~GWT~YpPLS~~~~~~g~~vd~~i~~l~l~gisSilg 160 (517)
T MTH00187 81 WLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILG 160 (517)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998758974154638999999999999999999734588888752047733456899627999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 56899999972368988313315666899999999997333578889987776329801146543210132212333401
Q gi|254780473|r 215 GINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294 (671)
Q Consensus 215 ~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGH 294 (671)
++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++||+|||++.||||+|||||||||||
T Consensus 161 siNfi~Ti~~mRa~Gm~~~~mPlf~Ws~l~ts~Lll~a~PvLa~a~~mll~DR~~gt~FF~p~~GGdpiL~QHLFWffGH 240 (517)
T MTH00187 161 AINFITTIINMKPPTMTQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240 (517)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 99999999986479987020479999999999999961609999999988140138877787778772057655553688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2579999879999999985310-564026689999999999997533221022478758899876533467889877999
Q gi|254780473|r 295 PEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKI 373 (671)
Q Consensus 295 PeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvki 373 (671)
|||||++|||+|++||++|++| |||+|||++|++|+++|+++||.||+|||||+|++++.+++|+++||+||||||+|+
T Consensus 241 PEVYIliLPafGiiSeii~~fs~rk~ifGy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~Tm~IavPTgikv 320 (517)
T MTH00187 241 PEVYILILPGFGMISHVVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKV 320 (517)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61441004126888775443048854133288999999999999988575422268880488899999999884257899
Q ss_pred HHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98787425873022437999999999999887556530343211121274220447899999999999999999962443
Q gi|254780473|r 374 FNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKA 453 (671)
Q Consensus 374 Fnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~ 453 (671)
|||++|||+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+||+
T Consensus 321 F~Wi~Tl~~g~i~~~~pml~~~gfi~~F~iGG~TGv~la~~~~D~~lHdTYfVVaHFHyvl~~g~vf~~fag~yyw~Pk~ 400 (517)
T MTH00187 321 FSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIILHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLF 400 (517)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999733987778878999999999997026554431244556351674467722334665699999999999970666
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07674716899999999999999999999987640530300258700579999999999999999999999999997449
Q gi|254780473|r 454 FGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 (671)
Q Consensus 454 ~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~ 533 (671)
|||++||++||+|||++++|+|++|+|||++|++|||||+++|+| +|+.||+++|+|+++.++|++.|++|++.|.+++
T Consensus 401 tG~~~~e~lgk~hf~~~fiG~nltFfPmh~lGl~GMPRR~~dY~~-~~~~~n~iss~Ga~i~~~~~~~f~~~~~~s~~~~ 479 (517)
T MTH00187 401 TGYTLHSTWTKIHFGIMFTGVNLTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSLISLIAVIMFMFILWEAFSSK 479 (517)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 467737678999999999999999999998645899878788778-8999999999999999999999999999999848
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 5356899989999710126998119989475960784550
Q gi|254780473|r 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTIDA 573 (671)
Q Consensus 534 ~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~d~ 573 (671)
||+. .|||+++||||+++||||+|||+++|+|++|+|
T Consensus 480 ~~~~---~~pw~~~tLEW~~~sPpp~~NF~e~p~V~~~~p 516 (517)
T MTH00187 480 REVL---SIELLNTNVEWLHGCPPPYHTYEEPAFVQVQQP 516 (517)
T ss_pred CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 8678---899999983108899999878699981007899
No 8
>MTH00128 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1388.86 Aligned_cols=510 Identities=38% Similarity=0.774 Sum_probs=501.0
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 303000014799999999999999999999999999850767566776687898999999999999999999999-9999
Q gi|254780473|r 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIMN 134 (671)
Q Consensus 56 ~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n 134 (671)
|+|++||||||||++|++++++++++|+++|++||+||+.|+ ..+.++|.|||++|+||++|||+++||.+. ||+|
T Consensus 4 ~rwl~t~dHK~IG~~Yli~~~~~~l~G~~~alliR~eL~~Pg---~~~~~~~~YN~l~T~HG~iMIFf~vmP~l~gGfgN 80 (516)
T MTH00128 4 TRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPG---ALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGN 80 (516)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 320111689999999999999999999999999999871896---56788889999999999999999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998649864005889999999999999999999971767788831347865587788520458877999999999875
Q gi|254780473|r 135 FVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLS 214 (671)
Q Consensus 135 ~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~ 214 (671)
|++|+|||||||||||+|++|||++++|.++++.|+++++++++|||.|||||+..+++|.++|+++++++++|+||+++
T Consensus 81 ~lvPLmIGa~DmAFPRLN~lSfWl~~~~~~ll~~S~~~~~g~~tGWT~YpPLS~~~~~~g~~vd~~i~~l~l~GiSSilg 160 (516)
T MTH00128 81 WLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG 160 (516)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999869972023648989999987999999999821678888760267733345788850999999999999999998
Q ss_pred HHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 56899999972368988313315666899999999997333578889987776329801146543210132212333401
Q gi|254780473|r 215 GINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294 (671)
Q Consensus 215 ~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGH 294 (671)
++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++|||++.||||+|||||||||||
T Consensus 161 sINfi~Ti~~mRapGmtl~rmPLFvWs~lvTs~lllla~PvLa~a~~mll~Dr~~~t~FF~~~~GGdpiL~QhLFWffGH 240 (516)
T MTH00128 161 AINFITTIINMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240 (516)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 99999999974988705120779999999999999998689999999988401048632267778871178989998089
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2579999879999999985310-564026689999999999997533221022478758899876533467889877999
Q gi|254780473|r 295 PEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKI 373 (671)
Q Consensus 295 PeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvki 373 (671)
|||||++|||+|++||++|++| |||+|||+.|++|+++|+++||.||+|||||+|++++.+++|+++||+||||||+|+
T Consensus 241 PEVYIliLPafGiis~ii~~fs~rk~ifGy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~T~~IavPtgvkv 320 (516)
T MTH00128 241 PEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKV 320 (516)
T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86999825417899999998427876504399999999998872233030212767883577899999999762468999
Q ss_pred HHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98787425873022437999999999999887556530343211121274220447899999999999999999962443
Q gi|254780473|r 374 FNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKA 453 (671)
Q Consensus 374 Fnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~ 453 (671)
|||++|||+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+||+
T Consensus 321 f~wi~T~~~g~~~~~~pml~a~gFi~~F~iGG~TGv~la~~~~D~~~HdTyfVVaHFHyvl~~g~vf~~f~g~yyw~Pk~ 400 (516)
T MTH00128 321 FSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFVHWFPLF 400 (516)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986584135568999999999998752221113763021312364324322888887699999999999998988
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07674716899999999999999999999987640530300258700579999999999999999999999999997449
Q gi|254780473|r 454 FGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 (671)
Q Consensus 454 ~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~ 533 (671)
|||++||+|||+|||++++|+|++|+|||++|++|||||+++||| +|+.||+++|+|+++.++|++.+++|++.|.++|
T Consensus 401 tG~~~~e~lgk~~f~~~fiG~nltFfPmh~lGl~GMPRR~~dY~~-~~~~~n~~st~Ga~i~~~~~l~f~~~~~~s~~~~ 479 (516)
T MTH00128 401 SGYTLHSTWTKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSLISLVAVIMFLFILWEAFAAK 479 (516)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 673531989999999999999999999999855899875787818-8999999999999999999999999999999608
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 535689998999971012699811998947596078455
Q gi|254780473|r 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTID 572 (671)
Q Consensus 534 ~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~d 572 (671)
|++.+ |||+++||||+++||||+|||+++|+|+++.
T Consensus 480 ~~~~~---~pw~~~tLEW~~~sPpp~~nF~~~p~V~~~~ 515 (516)
T MTH00128 480 REVLS---VELTSTNVEWLHGCPPPYHTFEEPAFVQVQS 515 (516)
T ss_pred CCCCC---CCCCCCCCEECCCCCCCCCCCCCCCEECCCC
T ss_conf 87889---9999998414989999987889997332678
No 9
>MTH00182 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1389.49 Aligned_cols=515 Identities=39% Similarity=0.790 Sum_probs=501.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 344303000014799999999999999999999999999850767566776687898999999999999999999999-9
Q gi|254780473|r 53 YLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-G 131 (671)
Q Consensus 53 ~lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G 131 (671)
--||+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|.|||++|+||++|||+++||.+. |
T Consensus 3 ~~~~~wl~ttdHK~IGi~Yl~~~~~~~~~G~~~alliR~eL~~p~---~~~~~~~~Yn~~~T~Hg~iMiF~~vmP~~~gg 79 (525)
T MTH00182 3 LYLTRWVFSTNHKDIGTLYLVFGIGAGMIGTAFSMLIRLELSAPG---AMLGDDHLYNVIVTAHAFIMIFFLVMPVMIGG 79 (525)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 288877001679999999999999999999999999999982885---34688248999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999998649864005889999999999999999999971767788831347865587788520458877999999999
Q gi|254780473|r 132 IMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGT 211 (671)
Q Consensus 132 ~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigs 211 (671)
|+||++|+|||||||||||+|++|||++++|+++++.|++.++++++|||.|||||+.+++||.++|+|+++++++|+||
T Consensus 80 fgN~lvPlmiGa~DmaFPRlN~~SfWl~~~~~~l~~~s~~~~~g~~~GWt~YpPLS~~~~~~g~~~d~~i~~l~l~gisS 159 (525)
T MTH00182 80 FGNWLVPLYIGAPDMAFPRLNNISFWLLPPALILLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGAVDMAIFSLHLAGVSS 159 (525)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998648974232618999999999999999999635788888740432752356899604899999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 87556899999972368988313315666899999999997333578889987776329801146543210132212333
Q gi|254780473|r 212 TLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWI 291 (671)
Q Consensus 212 ll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~ 291 (671)
+++++||++||+|||+|||+++|||+|+|+.++|++++++++|+|++|++|+++||++||+|||++.||||+||||||||
T Consensus 160 ilg~iNfi~Ti~~mRapGm~~~~mPlf~Ws~l~Ts~Lll~a~PvL~~a~~mll~DR~~gt~FF~p~~GGdpiL~QHLFWf 239 (525)
T MTH00182 160 ILGAINFITTIFNMRAPGVSFNRMPLFVWSILITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILFQHLFWF 239 (525)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCEEE
T ss_conf 99999999999985379998321219999999999999951539999999987242447778786778743243153122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4012579999879999999985310-564026689999999999997533221022478758899876533467889877
Q gi|254780473|r 292 WGHPEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTG 370 (671)
Q Consensus 292 fGHPeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTg 370 (671)
||||||||+||||+|++||++|+++ |||+|||+.|++|+++|+++|+.||+|||||+|++++.+++|+.+||+||||||
T Consensus 240 fGHPEVYIliLPafGiiS~ii~~fs~rk~ifgy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~Tm~IaiPTg 319 (525)
T MTH00182 240 FGHPEVYILILPGFGMISQIIPTFVAKKQIFGYLGMVYAMLSIGILGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTG 319 (525)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHEEEECCCEEECCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 59872331004126899999987527864110227999999998740145202325127881267899999999870204
Q ss_pred HHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998787425873022437999999999999887556530343211121274220447899999999999999999962
Q gi|254780473|r 371 AKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWF 450 (671)
Q Consensus 371 vkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~ 450 (671)
+|+|||++|+|+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+
T Consensus 320 ikif~Wi~Tl~~g~i~~~~pml~~lgFi~~F~iGGlTGv~la~~~~D~~lHDTYfVVaHFHyVl~~g~vf~~fag~yyWf 399 (525)
T MTH00182 320 IKVFSWLATIYGGTLRLDTPMLWAMGFVFLFTLGGLTGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIFGGFYYWI 399 (525)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 79999999964898778878999999999998213240010355414031671688742200145489999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44307674716899999999999999999999987640530300258700579999999999999999999999999997
Q gi|254780473|r 451 PKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSF 530 (671)
Q Consensus 451 Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~ 530 (671)
||+|||++||+|||+|||++++|+|++|+|||++|++|||||+++|+| +++.||+++++|+++.++|++.++++++.+.
T Consensus 400 Pk~tG~~~~e~lgk~hF~~~fiG~nltFfPmh~lGl~GMPRR~~dY~~-~~~~wn~iss~Gs~i~~~~~~~f~~~i~~~~ 478 (525)
T MTH00182 400 GKITGYCYNELYGKVHFWLMFIGVNLTFFPQHFLGLAGFPRRYSDFAD-AFAGWNLVSSLGSIISIVGVVWFLYIVYDLY 478 (525)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998664647789999999999999999999998646899888788768-8999999999999999999999999999999
Q ss_pred HCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 4495356-8999899997101269981199894759607845
Q gi|254780473|r 531 LNRSKLQ-DTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTI 571 (671)
Q Consensus 531 ~~~~~~~-~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~ 571 (671)
.++++.. ...+|||+++||||++|||||+|||+++|+|++.
T Consensus 479 ~~~~~~~~~~~~~p~~~~TLEW~~~SPPp~hNF~~iP~V~~s 520 (525)
T MTH00182 479 VREEPFIGWKEGTGESWASLEWVHVSPPLFHTYEELPFVYKS 520 (525)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 825734567789999999842188999998787888649860
No 10
>MTH00116 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1385.82 Aligned_cols=511 Identities=37% Similarity=0.762 Sum_probs=502.5
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 4303000014799999999999999999999999999850767566776687898999999999999999999999-999
Q gi|254780473|r 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIM 133 (671)
Q Consensus 55 w~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~ 133 (671)
+|+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|+|||++|+||++|||+++||.+. ||+
T Consensus 3 i~rwl~ttdHK~IGi~Y~i~~~~~~~~G~~~a~liR~eL~~p~---~~~~~~~~YN~~~T~HG~iMiF~~vmP~l~ggfg 79 (515)
T MTH00116 3 INRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELGQPG---TLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFG 79 (515)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3254010578999999999999999999999999999982886---5678888999999999999999999999998889
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999864986400588999999999999999999997176778883134786558778852045887799999999987
Q gi|254780473|r 134 NFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTL 213 (671)
Q Consensus 134 n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll 213 (671)
||++|+|||||||||||+|++|||++++|+++++.|+++++++++|||.|||||+..+++|.++|+|+++++++|+||++
T Consensus 80 NylvPl~iGa~DmAFPRlN~~SfWl~~~~~~l~~~s~~~~~g~~~GWt~YpPLS~~~~~~g~~vd~~i~~l~l~gissil 159 (515)
T MTH00116 80 NWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSIL 159 (515)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999986996211144677889998899999999986157888872130774235688986099999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 55689999997236898831331566689999999999733357888998777632980114654321013221233340
Q gi|254780473|r 214 SGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293 (671)
Q Consensus 214 ~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fG 293 (671)
+++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++|||++.||||+||||||||||
T Consensus 160 gaiNfi~Ti~~mRapGmt~~rmPlf~Ws~l~ts~lllla~PvLa~a~~mll~DR~~~t~FF~p~~GGdpiL~QHLFWffG 239 (515)
T MTH00116 160 GAINFITTAINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239 (515)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHC
T ss_conf 89999999987388887805177999999999999999838999999987605336853336777875348888888817
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12579999879999999985310-56402668999999999999753322102247875889987653346788987799
Q gi|254780473|r 294 HPEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAK 372 (671)
Q Consensus 294 HPeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvk 372 (671)
||||||++|||+|++||++|++| |||+|||++|++|+++|+++||.||+|||||+|++++.|++|+++||+||||||+|
T Consensus 240 HPEVYIliLPafGiiS~ii~~~s~rk~ifgy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~Tm~IaiPtgik 319 (515)
T MTH00116 240 HPEVYILILPGFGIISHVVTYYAGKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIK 319 (515)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEECCCCEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98699982432899999999862787540318999999999875022010201156887578889888888876447999
Q ss_pred HHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99878742587302243799999999999988755653034321112127422044789999999999999999996244
Q gi|254780473|r 373 IFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPK 452 (671)
Q Consensus 373 iFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk 452 (671)
+|||++|+|+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+||
T Consensus 320 vf~Wi~Tl~~g~~~~~~pml~algFi~~F~iGGlTGv~La~~~~D~~lHdTYfVVaHFHyVl~~gavf~~f~g~yyW~Pk 399 (515)
T MTH00116 320 VFSWLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPL 399 (515)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998557400150899999999999600221440477510004477458987752136658999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 30767471689999999999999999999998764053030025870057999999999999999999999999999744
Q gi|254780473|r 453 AFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532 (671)
Q Consensus 453 ~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~ 532 (671)
+|||++||||||+|||++++|+|++|+|||++|++|||||+++||| +|+.||+++|+|+++.++|++++++|++.|.++
T Consensus 400 ~tG~~~~e~lgk~hf~~~fiG~nltFfPmh~lGl~GMPRR~~dY~~-~~~~~n~iss~Gs~i~~~~~l~f~~~~~~s~~~ 478 (515)
T MTH00116 400 FTGYTLHQTWTKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTISSIGSLISMTAVIMLMFIIWEAFSS 478 (515)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8573531889999999999999999999999973899874577727-799999999999999999999999999999832
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 9535689998999971012699811998947596078455
Q gi|254780473|r 533 RSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTID 572 (671)
Q Consensus 533 ~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~d 572 (671)
||++.+ |||+++||||+++||||+|||+++|+|++||
T Consensus 479 ~~~~~~---~~~~~~tLEW~~~sPpp~~nF~~~PvV~~~~ 515 (515)
T MTH00116 479 KRKVLQ---PELTTTNIEWIHGCPPPYHTFEEPAFVQVQE 515 (515)
T ss_pred CCCCCC---CCCCCCCCEECCCCCCCCCCCCCCCEEECCC
T ss_conf 876789---9999988033889999987879896230589
No 11
>MTH00184 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1385.84 Aligned_cols=513 Identities=40% Similarity=0.816 Sum_probs=503.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 44303000014799999999999999999999999999850767566776687898999999999999999999999-99
Q gi|254780473|r 54 LWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GI 132 (671)
Q Consensus 54 lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~ 132 (671)
-.|+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|.|||++|+||++|||+++||.+. ||
T Consensus 4 ~~~~wl~t~dHK~IGi~Yl~~~~~~~~~Gg~~alliR~eL~~p~---~~~~~~~~Yn~~~T~HG~iMIF~~vmP~~~ggf 80 (519)
T MTH00184 4 YLSRWLFSTNHKDIGTLYLLFGAFAGMIGTAFSMLIRLELSAPG---SMLGDDHLYNVIVTAHAFVMIFFLVMPVMIGGF 80 (519)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77778002678999999999999999999999999999973984---346881489998999999999999999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999986498640058899999999999999999999717677888313478655877885204588779999999998
Q gi|254780473|r 133 MNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTT 212 (671)
Q Consensus 133 ~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsl 212 (671)
+||++|+|||||||||||+|++|||++++|++++..|++.++++++|||.|||||+.++++|.++|+|+++++++|+||+
T Consensus 81 gNyliPLmiGA~DmAFPRLN~lSfWl~~~~~~ll~~s~~~~~g~~~GWT~YpPLS~~~~~~g~~vd~~i~~l~l~GisSi 160 (519)
T MTH00184 81 GNWLVPLYIGAPDMAFPRLNNISFWLLPPALTLLLGSAFVEQGAGTGWTVYPPLSGIQTHSGGSVDMAIFSLHLAGISSI 160 (519)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999986489742215189999999999999999985358878898611268534567996078999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 75568999999723689883133156668999999999973335788899877763298011465432101322123334
Q gi|254780473|r 213 LSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIW 292 (671)
Q Consensus 213 l~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~f 292 (671)
++++||++||+|+|+|||+++|||+|+|+.++||+++++++|+|++|++|+++||++||+|||++.||||+|||||||||
T Consensus 161 lgsiNfi~Ti~~mRapGmt~~rmPlf~Ws~l~ts~l~l~a~PvL~~a~~mll~Dr~~gt~fFdp~~GGdpvL~QHLFWff 240 (519)
T MTH00184 161 LGAMNFITTIFNMRAPGITMDRMPLFVWSILVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFF 240 (519)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCEEEC
T ss_conf 98999999999727899883107399999999999999851699999999884011377777867786343441551435
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 012579999879999999985310-5640266899999999999975332210224787588998765334678898779
Q gi|254780473|r 293 GHPEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGA 371 (671)
Q Consensus 293 GHPeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgv 371 (671)
|||||||++|||+|++||++|++| |||+|||++|++|+++|+++|+.||+|||||+|++++.+++|+.+||+||||||+
T Consensus 241 GHPEVYIliLPafGiiSeii~~fs~rk~iFGy~~mv~a~~~I~~lgf~VW~HHMft~G~~~~~~~~F~~~T~~IaiPtgi 320 (519)
T MTH00184 241 GHPEVYILILPGFGIVSQIIPTFSAKKQIFGYLGMVYAMVSIGILGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGI 320 (519)
T ss_pred CCCEEEEHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCEEECCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 89701002320268999987313578753231899999999997411453023240578812578999999998712067
Q ss_pred HHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987874258730224379999999999998875565303432111212742204478999999999999999999624
Q gi|254780473|r 372 KIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFP 451 (671)
Q Consensus 372 kiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~P 451 (671)
|+|||++|+|+||+|+++||+|++||+++|++||+||+++|++++|+++|||||||||||||+.+|++|++|||+|||+|
T Consensus 321 kvfnwi~Tl~~g~i~~~~p~l~~lgFi~~F~iGG~TGv~la~~~~D~~lHDTyfVVaHFHyVl~~g~vf~~f~g~yywfP 400 (519)
T MTH00184 321 KIFSWIATIFGGSLRLDTPMLWAIGFVFLFTMGGLTGIVLANSSLDVVLHDTYYVVAHFHYVLSMGAVFAIFGGFYYWFG 400 (519)
T ss_pred HHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 99999999619852687789999999999971165512112644452447806887422010243899999999999858
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43076747168999999999999999999999876405303002587005799999999999999999999999999974
Q gi|254780473|r 452 KAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFL 531 (671)
Q Consensus 452 k~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~ 531 (671)
|++||++||++||+|||++++|+|++|+|||++|++|||||+++|+| +++.||+++++|+++..++++.|++|++.|++
T Consensus 401 k~tG~~~~e~lgk~~f~l~fiG~nltF~Pmh~lGl~GMPRR~~dY~~-~~~~wn~iss~gs~~~~~~~~~f~~~i~~s~~ 479 (519)
T MTH00184 401 KITGYCYNEVYGKIHFWLMFIGVNLTFFPQHFLGLAGLPRRYSDFHD-SFAGWNQISSLGSVISIVAVIWFIYIVYDAYC 479 (519)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88760767899999999999999999999998635899876788737-78999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 495356899989999710126998119989475960784
Q gi|254780473|r 532 NRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVST 570 (671)
Q Consensus 532 ~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~ 570 (671)
+++|+++.++|||+++||||+++||||+|||+++|+|+.
T Consensus 480 ~~~~~~~~~~npw~~~tLEW~~~SPpp~~NF~~~P~Vtr 518 (519)
T MTH00184 480 REIKFVGWVEDSGHHPSLEWAQTSPPAHHTYNELPYVSK 518 (519)
T ss_pred HCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEECC
T ss_conf 434346678999999983049999899878788783337
No 12
>MTH00078 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1383.04 Aligned_cols=519 Identities=33% Similarity=0.692 Sum_probs=502.2
Q ss_pred HHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 4303-000014799999999999999999999999999850767566776687898999999999999999999999-99
Q gi|254780473|r 55 WKEW-FTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GI 132 (671)
Q Consensus 55 w~~w-ltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~ 132 (671)
-|+| +|||||||||++|++++++++++|+++|++||+||+.|++. ..+.++|+|||++|+||++|||+++||.+. ||
T Consensus 11 ~~~~~ltttdHK~IGilYli~~~~~~l~Gg~lallIR~eL~~Pg~~-l~~~~~~~YN~l~T~HG~iMIFf~vmP~l~gGf 89 (548)
T MTH00078 11 MKQSIINTVNHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGY-LFFGSGQVYNSVLTMHGVLMIFFMVMPILIGGF 89 (548)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8888830567899999999999999999999999999998189865-347981389999999999999999999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999986498640058899999999999999999999717677888313478655877885204588779999999998
Q gi|254780473|r 133 MNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTT 212 (671)
Q Consensus 133 ~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsl 212 (671)
+||++|+|||||||||||+|++|||++++|.++++.|++.++++++|||.|||||. +++|+.++|+|+++++++|+||+
T Consensus 90 gNylvPLmIGArDmAFPRLN~lSfWl~~~~~~ll~~S~~~~gg~~tGWT~YpPLS~-~~~~~~~vD~~i~~l~l~GiSSi 168 (548)
T MTH00078 90 GNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSV-EGQPELSLDVMILGLHTVGIGSL 168 (548)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999986589741436189999999999999999998537888988320488555-78997159999999999998999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 75568999999723689883133156668999999999973335788899877763298011465432101322123334
Q gi|254780473|r 213 LSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIW 292 (671)
Q Consensus 213 l~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~f 292 (671)
++++||++||+|||+|||+++|||+|+|+.++|++++++++|+|++|++|+++||++||+|||++.||||+|||||||||
T Consensus 169 lgsINfI~TI~~mRapGMtl~rmPLFvWs~l~Ts~LlllalPvLa~a~~mLl~DR~~gt~FFdp~~GGdPiLyQHLFWFf 248 (548)
T MTH00078 169 LGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFF 248 (548)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 98899999999705889987877789999999999999970899999998761545567676778886335888877863
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 012579999879999999985310564-0266899999999999975332210224787588998765334678898779
Q gi|254780473|r 293 GHPEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGA 371 (671)
Q Consensus 293 GHPeVYIliLPa~Gi~seiip~fs~kp-lfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgv 371 (671)
|||||||++||++|++||++++++||| +|||++|++|+++|+++|+.||+|||||+|++++.|++|+++||+||||||+
T Consensus 249 GHPEVYIlILPafGiiS~ii~~~s~k~~iFGy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~r~~F~~~Tm~IavPTgi 328 (548)
T MTH00078 249 GHPEVYVIILPVFGIISEAVLFLTDKDRLFGQTSMTFASIWIAVLGTSVWGHHMYTAGLDIDTRTYFSAATMIIAIPSAV 328 (548)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89734320350689999998760377410103899999999986602323035024788804888999999987611257
Q ss_pred HHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987874258730224379999999999998875565303432111212742204478999999999999999999624
Q gi|254780473|r 372 KIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFP 451 (671)
Q Consensus 372 kiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~P 451 (671)
|+|||++|+|+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+|
T Consensus 329 kvF~Wl~Tl~~g~~~~~~~ml~~lgFi~lF~iGGlTGv~la~~~~D~~~HdTY~VVaHFHyVL~~gavf~ifag~~yWfP 408 (548)
T MTH00078 329 KIFNWLGTFFGSNQKMQPLWCWTYSFIFLFTVGGLSGIILSAASLDIILHDTYYVVAHFHYTLSLGAVYGIFCGFCLWLP 408 (548)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986178988787999999999999873153432304553361405743776214535665999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43076747168999999999999999999999876405303002587005799999999999999999999999999974
Q gi|254780473|r 452 KAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFL 531 (671)
Q Consensus 452 k~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~ 531 (671)
|+|||++||+|||+|||++++|+|++|+|||++|++|||||+++||| +|+.||.+||+|+++.++|+++|++|+++|.+
T Consensus 409 k~tG~~~~e~lgk~~f~~~fiG~nltFfP~h~lGl~GMPRR~~dYp~-~~~~~n~iss~Gs~i~~~~~~~f~~~~~~S~~ 487 (548)
T MTH00078 409 YMYGISFDSLMMMAVFVCFFIGTNMTFFPMHFAGLQGMPRKILDYPD-CYSTFQIISSLGSVITFVGFMLFNYLMIDSIF 487 (548)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98615214789999999999999999999988435899888898648-89999999989999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCC
Q ss_conf 49535689998999971012699811998947596078455047755539
Q gi|254780473|r 532 NRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTIDAWEHMKNRG 581 (671)
Q Consensus 532 ~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~d~~~~~k~~~ 581 (671)
++|++.+ |||+++||||+++||||+|||+|.|.|.+++ ||.|.+.
T Consensus 488 ~g~~~~~---npw~~~slEW~~~sPP~~~nF~E~~~~~~~~--~~~~~~~ 532 (548)
T MTH00078 488 FSRFLGV---SFYNYHSPAYVSNVPPLPDSFTEEIFIMGLH--WKVISKD 532 (548)
T ss_pred HCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--HCCCCCC
T ss_conf 4983678---9999988533879978976879840452314--0004899
No 13
>MTH00167 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1381.44 Aligned_cols=508 Identities=38% Similarity=0.765 Sum_probs=499.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 4303000014799999999999999999999999999850767566776687898999999999999999999999-999
Q gi|254780473|r 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIM 133 (671)
Q Consensus 55 w~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~ 133 (671)
+|+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|.|||++|+||++|||+++||.+. ||+
T Consensus 3 ~~~wl~t~dHK~IG~~Y~~~~~~~~~~G~~~a~liR~eL~~p~---~~~~~~~~YN~~~T~Hg~iMIF~~vmP~l~ggfg 79 (513)
T MTH00167 3 MTRWLFSTNHKDIGTLYFIFGAWAGMVGTAMSVLIRAELSQPG---SLIGDDQLYNVIVTAHAFVMIFFFVMPIMIGGFG 79 (513)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6564000578999999999999999999999999999981885---4578825899999999999999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999864986400588999999999999999999997176778883134786558778852045887799999999987
Q gi|254780473|r 134 NFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTL 213 (671)
Q Consensus 134 n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll 213 (671)
||++|+|||||||||||+|++|||++++|+++++.|++.++++++|||.|||||+.++++|.++|+|+++++++|+||++
T Consensus 80 NyliPlmiGA~DmAFPRLN~~SfWl~~~~~~l~~~S~~~~~g~~~GWt~YpPLS~~~~~~g~~vd~~i~~l~l~GisSil 159 (513)
T MTH00167 80 NWLVPMMIGAPDMAFPRMNNMSFWLLPPSFSLLLASSAVEAGVGTGWTVYPPLSGNIAHAGASVDLAIFSLHLAGVSSIL 159 (513)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999973897314361899999999999999999986368889997416773124689972499999999999889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 55689999997236898831331566689999999999733357888998777632980114654321013221233340
Q gi|254780473|r 214 SGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293 (671)
Q Consensus 214 ~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fG 293 (671)
+++||++||+|||+|||+++|||+|+|+.++|++++++++|+|++|++|+++||++|++|||++.||||+||||||||||
T Consensus 160 gsiNfi~Ti~~mRa~Gmt~~rmPlF~Ws~l~ts~Lll~a~PvL~~a~~mll~Dr~~~t~Ff~p~~GGdpvL~QhLFWffG 239 (513)
T MTH00167 160 GAINFITTIHNMRAKGMEWNRVPLFVWSIWVTTILLLLSLPVLAAAITMLLTDRNFNTTFFDPSGGGDPILYQHLFWFFG 239 (513)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHCCC
T ss_conf 89999999998468999855364799999999999996641999999998705244775668777865324503010048
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12579999879999999985310-56402668999999999999753322102247875889987653346788987799
Q gi|254780473|r 294 HPEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAK 372 (671)
Q Consensus 294 HPeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvk 372 (671)
||||||++||++|++||++|++| |||+|||+.|++|+++|+++|+.||+|||||+|++++.+++|+++||+||||||+|
T Consensus 240 HPEVYIliLPafGiiSeii~~fs~rk~ifGy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~T~~IaiPTgik 319 (513)
T MTH00167 240 HPEVYILILPGFGMISHIIIFYSGKLRSFGYLGMTWAMFTIGLLGFLVWAHHMFTVGMDVDTRAYFTAATMVIAVPTGIK 319 (513)
T ss_pred CCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 86244110304789999998613776522367899999999999877614000412778127789999999987202689
Q ss_pred HHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99878742587302243799999999999988755653034321112127422044789999999999999999996244
Q gi|254780473|r 373 IFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPK 452 (671)
Q Consensus 373 iFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk 452 (671)
+|||++|+|+||+|+++||+|++||+.+|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+||
T Consensus 320 vF~Wi~Tl~~g~i~~~~pml~~~gfi~~F~iGG~TGv~la~~~~D~~lHdTyfVVaHFHyvl~~g~vf~~~ag~yyWfPk 399 (513)
T MTH00167 320 VFSWLATLAGSKIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIFAGFTHWFPL 399 (513)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999998489889987899999999999721433114326432434477068874201003548999999999997002
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 30767471689999999999999999999998764053030025870057999999999999999999999999999744
Q gi|254780473|r 453 AFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532 (671)
Q Consensus 453 ~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~ 532 (671)
+|||++|||+||+|||++++|+|++|+|||++|++|||||+++|+| +++.||+++|+|++++++|++++++|++.|+++
T Consensus 400 ~tG~~~~e~lg~~~f~~~fiG~nltF~Pmh~lGl~GMPRR~~dY~~-~~~~~N~iss~Gs~i~~~~~~~f~~~~~~s~~~ 478 (513)
T MTH00167 400 FTGLSLNESLTKIHFFVMFVGVNLTFFPQHFLGLAGMPRRYSDYPD-AYTIWNVVSSLGSIISLGGVVFFLFIIWEAFSS 478 (513)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0140316589999999999989999999998645899888788728-899999999999999999999999999999984
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 9535689998999971012699811998947596078
Q gi|254780473|r 533 RSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569 (671)
Q Consensus 533 ~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~ 569 (671)
|||+.+ |||+++||||+++||||+|||+++|+|+
T Consensus 479 ~~~~~~---npw~~~tLEW~~~sPpp~~nF~~~P~v~ 512 (513)
T MTH00167 479 QRKAVP---ASHTSHSLEWLMGCPPLFHTWEESPFIS 512 (513)
T ss_pred CCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 887789---9999998512889999987888887127
No 14
>MTH00077 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1378.83 Aligned_cols=509 Identities=37% Similarity=0.762 Sum_probs=500.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 303000014799999999999999999999999999850767566776687898999999999999999999999-9999
Q gi|254780473|r 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIMN 134 (671)
Q Consensus 56 ~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n 134 (671)
|+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|+|||++|+||++|||+++||.+. ||+|
T Consensus 4 ~rwl~ttdHK~IG~~Y~~~~~~~~l~G~~lalliR~eL~~Pg---~~~~~~~~YN~~~T~HG~iMIFf~vmP~l~gGFgN 80 (515)
T MTH00077 4 TRWLFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPG---TLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGN 80 (515)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 000113678999999999999999999999999999980886---45688248999899999999999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998649864005889999999999999999999971767788831347865587788520458877999999999875
Q gi|254780473|r 135 FVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLS 214 (671)
Q Consensus 135 ~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~ 214 (671)
|++|+|||||||||||+|++|||++++|+++++.|+++++++++|||.|||||+..+++|.++|+++++++++|+||+++
T Consensus 81 yliPLmiGA~DmAFPRLN~lSfWl~~~~~~ll~~S~~~~~g~~~GWT~YpPLS~~~~~~g~~vd~~i~~l~l~GiSSilg 160 (515)
T MTH00077 81 WLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG 160 (515)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999729973144628999999999999999999744588888741136843356898715999999999999999998
Q ss_pred HHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 56899999972368988313315666899999999997333578889987776329801146543210132212333401
Q gi|254780473|r 215 GINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294 (671)
Q Consensus 215 ~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGH 294 (671)
++||++||.|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++||+|||++.||||+|||||||||||
T Consensus 161 siNfi~Ti~~mRa~gmt~~~~plfvWs~l~ts~Lllla~PvLa~a~~mll~DR~~~t~FFdp~~GGdpiL~QHLFWffGH 240 (515)
T MTH00077 161 AINFITTSINMKPPSMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGH 240 (515)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999985679987020379999999999999964549999999988241248867786778761266643676489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2579999879999999985310-564026689999999999997533221022478758899876533467889877999
Q gi|254780473|r 295 PEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKI 373 (671)
Q Consensus 295 PeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvki 373 (671)
|||||++||++|++||++|++| |||+|||++|++|+++|+++|+.||+|||||+|++++.+++|+++||+||||||+|+
T Consensus 241 PEVYIliLPafGiis~ii~~~s~rk~~FG~~~mv~a~~~I~~lgf~VW~HHMft~G~~~~~~~~F~~~T~~IavPTgikv 320 (515)
T MTH00077 241 PEVYILILPGFGMISHIVTYYSAKKEPFGYMGMVWAMMSIGLLGFIVWAHHMFTVDLNVDTRAYFTSATMIIAIPTGVKV 320 (515)
T ss_pred CEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 71341104066777662001456765302178999999999999988476422368880467799999999986578999
Q ss_pred HHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98787425873022437999999999999887556530343211121274220447899999999999999999962443
Q gi|254780473|r 374 FNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKA 453 (671)
Q Consensus 374 Fnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~ 453 (671)
|||++|+|+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+||+
T Consensus 321 f~w~~Tl~~g~i~~~~pml~~~gfi~~F~iGG~tGv~l~~~~~D~~lHdTyfVVaHFHyvl~~g~vf~~~~g~yywfPk~ 400 (515)
T MTH00077 321 FSWLATMHGGAIKWDAAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLF 400 (515)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999961898778888999999999987046440211254324000681689853201345489999999999998999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07674716899999999999999999999987640530300258700579999999999999999999999999997449
Q gi|254780473|r 454 FGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 (671)
Q Consensus 454 ~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~ 533 (671)
+||++||+|||+|||++++|+|++|+|||++|++|||||+++||| +++.||+++|+|++++++|++++++|++.|.+++
T Consensus 401 tG~~~~e~lgk~~f~~~fiG~nltFfPmh~lGl~GMPRR~~dY~~-~~~~~n~iss~Ga~i~~~~~~~~~~~~~~s~~~~ 479 (515)
T MTH00077 401 SGYTLHSTWSKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSLISLVAVIMMMFIIWEAFSSK 479 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 736223778999999999999999999998645899878788758-8999999999999999999999999999999848
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 53568999899997101269981199894759607845
Q gi|254780473|r 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTI 571 (671)
Q Consensus 534 ~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~ 571 (671)
|++.+ |||+++||||+++||||+|||+|+|.|++|
T Consensus 480 ~~~~~---~pw~~~tLEW~~~sPpp~~nF~e~p~v~~~ 514 (515)
T MTH00077 480 REVLT---TELTSTNIEWLHGCPPPYHTFEEPSFVQTR 514 (515)
T ss_pred CCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87789---999999741488999997788998752117
No 15
>MTH00037 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1375.74 Aligned_cols=509 Identities=39% Similarity=0.793 Sum_probs=498.7
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 303000014799999999999999999999999999850767566776687898999999999999999999999-9999
Q gi|254780473|r 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIMN 134 (671)
Q Consensus 56 ~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n 134 (671)
|+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|+|||++|+||++|||+++||.+. ||+|
T Consensus 4 ~~wl~ttdHK~IG~~Yl~~~~~~~~~G~~~a~liR~eL~~p~---~~~~~~~~YN~~~T~Hg~iMIF~~~mP~~~ggfgN 80 (517)
T MTH00037 4 SRWLFSTNHKDIGTLYLIFGAWAGMVGTAMSVIIRTELAQPG---SLLQDDQIYNVIVTAHALVMIFFMVMPIMIGGFGN 80 (517)
T ss_pred CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 522002778999999999999999999999999999980864---24688038999999999999999999999999899
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998649864005889999999999999999999971767788831347865587788520458877999999999875
Q gi|254780473|r 135 FVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLS 214 (671)
Q Consensus 135 ~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~ 214 (671)
|++|+|||||||||||+|++|||++++|+++++.|++.++++++|||.|||||+..++++.++|+|+++++++|+||+++
T Consensus 81 yliPlmiGa~DmaFPRLN~~SfWl~~~~~~l~~~s~~~~~g~~~GWT~YpPLS~~~~~~g~~vd~~i~~l~l~gisSil~ 160 (517)
T MTH00037 81 WLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLLASAGVESGAGTGWTIYPPLSSGLAHAGGSVDLAIFSLHLAGASSILA 160 (517)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999749974142608999999999999999999734688899871107854567799608999999999999999986
Q ss_pred HHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 56899999972368988313315666899999999997333578889987776329801146543210132212333401
Q gi|254780473|r 215 GINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294 (671)
Q Consensus 215 ~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGH 294 (671)
++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++|||++.||||+|||||||||||
T Consensus 161 siNfi~Ti~~mR~pGm~~~~mPlf~Ws~l~ts~lllla~PvL~~a~~mll~DR~~~t~FF~~~~GGdpiL~QhLFWffGH 240 (517)
T MTH00037 161 SINFITTIINMRTPGMSFDRLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNINTTFFDPAGGGDPILFQHLFWFFGH 240 (517)
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCHHHHCCC
T ss_conf 89999989985689998310459999999999999976449999999987211038856676778763355221331598
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2579999879999999985310-564026689999999999997533221022478758899876533467889877999
Q gi|254780473|r 295 PEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKI 373 (671)
Q Consensus 295 PeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvki 373 (671)
|||||++|||+|++||++|+++ |||+|||++|++|+++|+++|+.||+|||||+|++++.+++|+++||+||||||+|+
T Consensus 241 PEVYIliLPafGiiSeii~~fs~rk~iFGy~~mv~A~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~Tm~IavPTgikv 320 (517)
T MTH00037 241 PEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAMIAIGILGFLVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKV 320 (517)
T ss_pred CEEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62441104036888776510248864312099999999999877776444302047782367799999999874358999
Q ss_pred HHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98787425873022437999999999999887556530343211121274220447899999999999999999962443
Q gi|254780473|r 374 FNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKA 453 (671)
Q Consensus 374 Fnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~ 453 (671)
|||++|+|+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+||+
T Consensus 321 F~WiaTl~~g~i~~~~pml~~lgFi~~F~iGGlTGv~la~~~~D~~lHdTyfVVaHFHyvl~~g~vf~~fag~yyWfPk~ 400 (517)
T MTH00037 321 FSWMATLQGSNLRWDTPLLWALGFVFLFTLGGLTGVVLANSSIDVVLHDTYYVVAHFHYVLSMGAVFAIFAGFTHWFPLF 400 (517)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999985898889888999999999997204211221475314001672577401356777699999999999870666
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07674716899999999999999999999987640530300258700579999999999999999999999999997449
Q gi|254780473|r 454 FGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 (671)
Q Consensus 454 ~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~ 533 (671)
|||++||||||+|||++++|+|++|+|||++|++|||||+++|+| +|+.||+++|+|+++.++|+++|++|++.|.++|
T Consensus 401 tG~~~~e~lgk~hf~~~fiG~nltFfPmh~lGl~GMPRR~~dY~~-~~~~~n~iss~Ga~i~~~~~l~f~~~~~~s~~~~ 479 (517)
T MTH00037 401 SGVSLHPLWSKVHFFLMFIGVNLTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSTISLVATLFFLFLIWEAFASQ 479 (517)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 332406789999999999999999999999765899878788718-8999999999999999999999999999999848
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEECCC
Q ss_conf 5356899989999710126998-1199894759607845
Q gi|254780473|r 534 SKLQDTIGDPWDGRTLEWSISS-PSPQYNFAFTPIVSTI 571 (671)
Q Consensus 534 ~~~~~~~~dPW~~~tLEW~~~s-Ppp~~nF~~~P~v~~~ 571 (671)
|++.+ |||+++||||+++| |||+|||+++|+|...
T Consensus 480 ~~~~~---~pw~~~tLEW~~~spPP~~~nF~~~P~V~~~ 515 (517)
T MTH00037 480 REVIS---PEFSSSSLEWQYSSFPPSHHTFDETPSTVII 515 (517)
T ss_pred CCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 88789---9999998013899999899888889848987
No 16
>MTH00183 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1374.19 Aligned_cols=507 Identities=40% Similarity=0.785 Sum_probs=498.3
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 303000014799999999999999999999999999850767566776687898999999999999999999999-9999
Q gi|254780473|r 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIMN 134 (671)
Q Consensus 56 ~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n 134 (671)
++|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|+|||++|+||++|||+++||.+. ||+|
T Consensus 2 ~~wl~ttdHK~IGi~Y~~~~~~~~~~G~~~a~liR~eL~~p~---~~~~~~~~Yn~~~T~HG~~MiF~~v~P~~~ggfgN 78 (511)
T MTH00183 2 MRWLFSTNHKDIGTLYFLFGAWAGMVGTALSLLIRAELGQPG---SLLGDDQLYNVIVTAHAFVMIFFMVMPVMIGGFGN 78 (511)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 600014778999999999999999999999999999982875---35688148999899999999999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998649864005889999999999999999999971767788831347865587788520458877999999999875
Q gi|254780473|r 135 FVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLS 214 (671)
Q Consensus 135 ~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~ 214 (671)
|++|+|||||||||||+|++|||++++|+++++.|++.++++++|||+|||||+..++++.++|+|+++++++|+||+++
T Consensus 79 ylvPl~iGa~DmaFPRlN~~sfWl~~~~~~l~~~s~~~~~g~~~GWt~YpPLS~~~~~~g~~vd~~i~~l~l~giSSi~g 158 (511)
T MTH00183 79 WLVPLMLGAPDMAFPRLNNMSFWLLPPALLLLLSSSLVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGISSILG 158 (511)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999738974243628999999999999999998346888889862154752357898548999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 56899999972368988313315666899999999997333578889987776329801146543210132212333401
Q gi|254780473|r 215 GINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294 (671)
Q Consensus 215 ~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGH 294 (671)
++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++|||++.||||+|||||||||||
T Consensus 159 aiNfi~Ti~~mRa~Gmt~~~mPlf~Ws~l~ts~l~l~a~PvL~~a~~mll~DR~~~t~FF~p~~GGdpvL~QhLFWffgH 238 (511)
T MTH00183 159 AINFITTVINMRAGGMKMERVPLFVWSVFITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGH 238 (511)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEECCC
T ss_conf 99999999986489985765189999999999999975459999999998321126767687888860143265331599
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2579999879999999985310-564026689999999999997533221022478758899876533467889877999
Q gi|254780473|r 295 PEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKI 373 (671)
Q Consensus 295 PeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvki 373 (671)
|||||++||++|++||++|++| |||+|||++|++|+++|+++||.||+|||||+|++++.+++|+++||+||||||+|+
T Consensus 239 PEVYIliLPafGivSeii~~fs~rk~ifGy~~mv~a~~~I~~lgf~VWaHHMFt~G~~~~~~~~Fs~~T~~IavPTgikv 318 (511)
T MTH00183 239 PEVYILILPGFGMISHVIAHYSGKKEVFGTLGMIYAMLSIGLLGFIVWAHHMFTVGMDVDTRAYFTAATMVIAVPTGIKV 318 (511)
T ss_pred CHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61011453037899999887527874312078999999999876565230003057780478999999999871226899
Q ss_pred HHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98787425873022437999999999999887556530343211121274220447899999999999999999962443
Q gi|254780473|r 374 FNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKA 453 (671)
Q Consensus 374 Fnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~ 453 (671)
|||++|+|+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+||+
T Consensus 319 F~WiaTl~gg~i~~~~pml~~~gfi~~F~iGG~TGv~la~~~~D~~~HdTyfVVaHFHyVl~~g~vf~~fag~yyw~Pk~ 398 (511)
T MTH00183 319 FSWLATLHGSKLKFEPPMLWALGFIFLFTIGGLTGIVLANSSLDVVLHDTYYVVAHFHYVLSMGAVFALFAGFIHWFPLF 398 (511)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999861898789888999999999998405541054054214344770588742022355389999999999999988
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 07674716899999999999999999999987640530300258700579999999999999999999999999997449
Q gi|254780473|r 454 FGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 (671)
Q Consensus 454 ~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~ 533 (671)
+||++|||+||+|||++++|+|++|+|||++|++|||||+++|+| +++.||+++|+|++++++|++++++|++.|.+++
T Consensus 399 tG~~~~e~lg~~hfw~~fiG~nltF~Pmh~lGl~GMPRR~~dY~~-~~~~~n~iss~Ga~i~~~~~l~f~~~~~~s~~~~ 477 (511)
T MTH00183 399 TGLTLNPRWLKAHFWVMFIGVNMTFFPQHFLGLAGMPRRYSDYPD-AYTTWNVVSSLGSMISFVGVLLFLFIVWEALASC 477 (511)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 656358799999999999999999999999755899877787748-8999999999999999999999999999999849
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 535689998999971012699811998947596078
Q gi|254780473|r 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569 (671)
Q Consensus 534 ~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~ 569 (671)
+++.+ |||+++||||+++||||+|||+++|+|.
T Consensus 478 ~~a~~---npw~~~tLEW~~~sPpp~~nf~~~Pvv~ 510 (511)
T MTH00183 478 RSVMF---ASFLSTSLEWSHSLPPDFHTNEELPLLV 510 (511)
T ss_pred CCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 86789---9999998323889999976788888542
No 17
>MTH00007 COX1 cytochrome c oxidase subunit I; Validated
Probab=100.00 E-value=0 Score=1375.45 Aligned_cols=507 Identities=36% Similarity=0.749 Sum_probs=498.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 0300001479999999999999999999999999985076756677668789899999999999999999999-999999
Q gi|254780473|r 57 EWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMI-TGIMNF 135 (671)
Q Consensus 57 ~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~-~G~~n~ 135 (671)
+|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|.|||++|+||++|||+++||.+ .||+||
T Consensus 2 rw~~ttdHK~IGi~Yl~~~~~~~~~G~~~a~liR~eL~~Pg---~~~~~~~~YN~~~T~HG~iMiF~~vmP~~~ggfgNy 78 (511)
T MTH00007 2 RWLYSTNHKDIGTLYFILGVWGGLLGTSMSLLIRIELGQPG---AFLGSDQLYNTIVTAHAFLMIFFLVMPVFIGGFGNW 78 (511)
T ss_pred CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64103687999999999999999999999999999980864---246874689999999999999999999999998999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986498640058899999999999999999999717677888313478655877885204588779999999998755
Q gi|254780473|r 136 VVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSG 215 (671)
Q Consensus 136 lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~ 215 (671)
++|+|||||||||||+|++|||++++|++++..|++.++++++|||.|||||+..+++|.++|+|++++++.|+||++++
T Consensus 79 lvPlmiGa~DmaFPRlN~~SfWl~~~~~~ll~~s~~~~~g~~~GWT~YpPLS~~~~~~g~~vd~~i~~l~l~gisSilgs 158 (511)
T MTH00007 79 LVPLMLGAPDMAFPRMNNMSFWLLPPALILLVSSAAVEKGVGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGVSSILGA 158 (511)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986499743014079999999999999999871268888887403046313678998339999999999999999979
Q ss_pred HHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 68999999723689883133156668999999999973335788899877763298011465432101322123334012
Q gi|254780473|r 216 INLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHP 295 (671)
Q Consensus 216 iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHP 295 (671)
+||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++||+|||++.||||+||||||||||||
T Consensus 159 iNfi~Ti~~mRa~Gm~~~rmPlf~Ws~l~Ts~lll~a~PvL~~a~~mll~DR~~~t~FF~p~~GGdp~L~QHLFWffGHP 238 (511)
T MTH00007 159 INFITTVINMRWKGLRLERIPLFVWAVVITVVLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHP 238 (511)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCEEECCCC
T ss_conf 99999999667699971423699999999999999624699999999972523488787867797543442560336997
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 579999879999999985310564-0266899999999999975332210224787588998765334678898779999
Q gi|254780473|r 296 EVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIF 374 (671)
Q Consensus 296 eVYIliLPa~Gi~seiip~fs~kp-lfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiF 374 (671)
||||++|||+|++||++|++|||| +|||++|++|+++|+++|+.||+|||||+|++++.+++|+++||+||||||+|+|
T Consensus 239 EVYIliLPafGiiSeii~~~s~kp~~Fg~~~mi~a~~~I~~lgf~VW~HHmft~G~~~~~~~~F~~~T~~IaiPTgikvf 318 (511)
T MTH00007 239 EVYILILPGFGAISHIVTHYAGKLEPFGTLGMIYAMLGIGVLGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVF 318 (511)
T ss_pred EEEEHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34210150468999998640588753141999999999998765540200251577814889999999987635688999
Q ss_pred HHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87874258730224379999999999998875565303432111212742204478999999999999999999624430
Q gi|254780473|r 375 NWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAF 454 (671)
Q Consensus 375 nwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~ 454 (671)
||++|+|+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||+||++
T Consensus 319 ~wi~Tl~~g~i~~~~pml~~lgFi~~F~iGG~TGv~la~~~~D~~~HdTyfVVaHFHyVl~~gavf~~fag~yyW~Pk~t 398 (511)
T MTH00007 319 SWLATIHGSPIKYETPMLWALGFIFLFTTGGLTGIVLSNSSLDIILHDTYYVTAHFHYVLSMGAVFAIFAAFNHWFPLFT 398 (511)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999858987788689999999999841462057734764453547826898542013465899999999998717652
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76747168999999999999999999999876405303002587005799999999999999999999999999974495
Q gi|254780473|r 455 GYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRS 534 (671)
Q Consensus 455 Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~ 534 (671)
||++||||||+|||++++|+|++|+|||++|++|||||+++|+| +++.||+++|+|+++.++|++.+++|++.|.+++|
T Consensus 399 G~~~~e~lgk~~F~~~fiG~nltF~Pmh~lGl~GMPRR~~dY~~-~~~~~n~ist~Gs~i~~~~~l~f~~~~~~s~~~~~ 477 (511)
T MTH00007 399 GLTLHARWAKAHFFLMFLGVNLTFFPQHFLGLSGMPRRYSDYPD-AYTKWNVISSFGSMLSFVALLFFIFILWEAFSAQR 477 (511)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43424689999999999999999999998645899877788727-79999999999999999999999999999998388
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 356899989999710126998119989475960784
Q gi|254780473|r 535 KLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVST 570 (671)
Q Consensus 535 ~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~ 570 (671)
++.+ |||+++||||+++||||+|||+|+|+|++
T Consensus 478 ~~~~---npw~~~tLEW~~~sPpp~~Nf~e~Pvvt~ 510 (511)
T MTH00007 478 GVIA---SSHLSSSLEWQDTLPLDFHNLPETGIITT 510 (511)
T ss_pred CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7789---99999973138799999667799876899
No 18
>MTH00142 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1372.40 Aligned_cols=506 Identities=38% Similarity=0.753 Sum_probs=497.6
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 03000014799999999999999999999999999850767566776687898999999999999999999999-99999
Q gi|254780473|r 57 EWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIMNF 135 (671)
Q Consensus 57 ~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n~ 135 (671)
+|++||||||||++|++++++++++|+++|++||+||+.|+ ..+.++|.|||++|+||++|||+++||.+. ||+||
T Consensus 2 rwl~ttdHK~IGi~Yl~~~~~~~~~G~~~alliR~eL~~p~---~~~~~~~~Yn~l~T~Hg~~MIFf~vmP~l~ggfgNy 78 (511)
T MTH00142 2 RWLFSTNHKDIGTLYFIFGIWSGLVGTSLSLMIRLELGQPG---ALLGDDQLYNVIVTAHAFVMIFFLVMPIMIGGFGNW 78 (511)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86434678999999999999999999999999999982888---778877789999999999999999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986498640058899999999999999999999717677888313478655877885204588779999999998755
Q gi|254780473|r 136 VVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSG 215 (671)
Q Consensus 136 lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~ 215 (671)
++|+|||||||||||+|++|||++++|+++++.|++.++++++|||.|||||+..+++|.++|+|++|++++|+||++++
T Consensus 79 lvPLmiGA~DmAFPRLN~lSfWl~~~~~ill~~S~~~~~g~~tGWt~YpPLS~~~~~~g~~vd~~i~~l~l~gisSilgs 158 (511)
T MTH00142 79 LVPLMLGAPDMAFPRMNNMSFWLLPPSLYLLLSSSAVESGAGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVSSILGA 158 (511)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986599742226289999999999999999971268878988722568544678996179999999999989999989
Q ss_pred HHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 68999999723689883133156668999999999973335788899877763298011465432101322123334012
Q gi|254780473|r 216 INLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHP 295 (671)
Q Consensus 216 iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHP 295 (671)
+||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++|||++.||||+|||||||+||||
T Consensus 159 iNfi~Ti~~mRapGmtl~rmPlF~Wsilvts~lll~a~PvL~~a~~mll~Dr~~~t~FF~p~~GGdpvl~QhLFWffGHP 238 (511)
T MTH00142 159 INFITTILNMRWEGMKMERLPLFVWSVFVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHP 238 (511)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEECCCC
T ss_conf 99999999312899970404199999999999999874099999999982311277666878887320322301005996
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57999987999999998531056-40266899999999999975332210224787588998765334678898779999
Q gi|254780473|r 296 EVYILVLPAFGIFSEVVATFSGK-RLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIF 374 (671)
Q Consensus 296 eVYIliLPa~Gi~seiip~fs~k-plfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiF 374 (671)
||||++||++|++||++|++||| |+|||+++++|+++|+++||.||+|||||+|++++.+++|+++||+||||||+|+|
T Consensus 239 EVYIliLPafGiis~ii~~~s~k~~~fg~~~mv~a~~~I~~lgf~VW~HHmFt~G~~~~~~~~F~~~T~~IavPtgikvf 318 (511)
T MTH00142 239 EVYILILPGFGMISHIVSHYSSKKEVFGTLGMIYAMLSIGILGFIVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVF 318 (511)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13200143257888866641278753114899999999987400111633050577813677889989997710157999
Q ss_pred HHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87874258730224379999999999998875565303432111212742204478999999999999999999624430
Q gi|254780473|r 375 NWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAF 454 (671)
Q Consensus 375 nwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~ 454 (671)
||++|+|+||+|+++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|+++||+|||+||++
T Consensus 319 ~wi~Tl~~g~i~~~~pml~~lgfi~~F~iGGlTGv~la~~~~D~~~HdTyfVVaHFHyvl~~g~vf~~~ag~~yW~Pk~t 398 (511)
T MTH00142 319 SWLATIYGSKIKYEAPMLWALGFIFLFTVGGLTGIILSNSSLDIMLHDTYYVVAHFHYVLSMGAVFAIFAGFNHWFPLIT 398 (511)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986208988898789999999999973151167742665362326716898430335665999999999998838864
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76747168999999999999999999999876405303002587005799999999999999999999999999974495
Q gi|254780473|r 455 GYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRS 534 (671)
Q Consensus 455 Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~ 534 (671)
||++|||+||+|||++++|+|++|+|||++|++|||||+++||| +++.||+++|+|+++.++|++++++|++.|.+++|
T Consensus 399 G~~~~e~lg~~~f~~~fiG~nltF~Pmh~lGl~GmPRR~~dY~~-~~~~~n~iss~Ga~i~~~~~~~f~~~~~~s~~~~~ 477 (511)
T MTH00142 399 GLTLHQQWAKAHFLLMFLGVNLTFFPQHFLGLAGMPRRYSDYPD-CYTKWNQVSSMGSMVSFTSVLFFIFIVWEALISQR 477 (511)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43406799999999999999999999998544899885888717-68999999999999999999999999999997088
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 35689998999971012699811998947596078
Q gi|254780473|r 535 KLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569 (671)
Q Consensus 535 ~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~ 569 (671)
++.+ |||+++||||+++||||+|||+|+|+|.
T Consensus 478 ~~~~---~p~~~~tLEW~~~sPpp~~nF~e~P~v~ 509 (511)
T MTH00142 478 TVVF---SGHLSTSLEWDNRLPVDFHSNPETGALY 509 (511)
T ss_pred CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 7788---9989998523879999976887887330
No 19
>MTH00026 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1372.64 Aligned_cols=512 Identities=38% Similarity=0.776 Sum_probs=495.2
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 4303000014799999999999999999999999999850767566776687898999999999999999999999-999
Q gi|254780473|r 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIM 133 (671)
Q Consensus 55 w~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~ 133 (671)
|++|++||||||||++|++++++++++|+++|++||+||+.|+ +.+.++|.|||++|+||++|||+++||.+. ||+
T Consensus 4 ~~rw~~t~dHK~IG~~Yl~~~~~~~~~Gg~lalliR~eL~~Pg---~~~~~~~~YN~l~T~HG~iMIFf~vmP~~~ggfg 80 (535)
T MTH00026 4 FVRWFFSCNHKDIGSLYLIFGALSGAIGTAFSMLIRLELSSPG---SMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFG 80 (535)
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2042202778999999999999999999999999999974985---2368834899999999999999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999864986400588999999999999999999997176778883134786558778852045887799999999987
Q gi|254780473|r 134 NFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTL 213 (671)
Q Consensus 134 n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll 213 (671)
||++|+|||||||||||+|++|||++++|.+++..|+++++++++|||.|||||+.++++|.++|+|+++++++|+||++
T Consensus 81 NyliPLmIGA~DmAFPRLN~lSfWl~~~a~~ll~~S~~~~~g~~~GWT~YpPLSs~~~~~g~~vd~~i~~l~l~GisSil 160 (535)
T MTH00026 81 NWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSIL 160 (535)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999864897323261899999999999999999833678789977210773136788962489999999999999998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 55689999997236898831331566689999999999733357888998777632980114654321013221233340
Q gi|254780473|r 214 SGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293 (671)
Q Consensus 214 ~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fG 293 (671)
+++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++||+|||++.||||+||||||||||
T Consensus 161 gsiNfi~Ti~~mRapGm~~~rmPlFvWs~lvTs~Lllla~PvLa~a~~mll~DR~~~t~FF~p~~GGdpiL~QHLFWffG 240 (535)
T MTH00026 161 GAMNFITTILNMRTPGMTMSRIPLFVWSVFITAILLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFG 240 (535)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHCC
T ss_conf 78999998986178998731128999999999999997546989999997714244887768677875204304032139
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1-2579999879999999985310-5640266899999999999975332210224787588998765334678898779
Q gi|254780473|r 294 H-PEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGA 371 (671)
Q Consensus 294 H-PeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgv 371 (671)
| |||||+|||++|++||++|++| |||+|||+.|++|+++|+++||.||+|||||+|++++.+++|+++||+||||||+
T Consensus 241 H~PEVYIliLPafGiiS~ii~~~s~rk~~fGy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~Tm~IavPTgi 320 (535)
T MTH00026 241 QITKGYILILPGFGIISQILSLFSYKKQIFGYLGMVKAMLAIGILGFIVWADHMYVVGMDVDTRAYFTAATMIIAVPTGI 320 (535)
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 99748999452279999999861588775347999999999998861221300420688813788988888886322058
Q ss_pred HHHHHHHHHCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999878742587--302243799999999999988755653034321112127422044789999999999999999996
Q gi|254780473|r 372 KIFNWLFTMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYW 449 (671)
Q Consensus 372 kiFnwl~Tl~~G--~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW 449 (671)
|+|||++|||+| ++++++||+|++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||
T Consensus 321 kvF~Wl~Tl~g~~~~i~~~~p~l~~lgfi~~F~iGGlTGv~la~~~~D~~lHDTYfVVaHFHyVl~~g~vf~if~g~yyW 400 (535)
T MTH00026 321 KIFSWLATISGSGRNLIFTTPMAWALGFIFLFTIGGLTGIVLSNSSLDILLHDTYYVVAHFHFVLSMGAVFAIFGGFYLW 400 (535)
T ss_pred HHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999718987764156899999999998602511476336530301236258852234355559999999999985
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24430767471689999999999999999999998764053030025870057999999999999999999999999999
Q gi|254780473|r 450 FPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVS 529 (671)
Q Consensus 450 ~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S 529 (671)
+||+|||++||++||+|||+.++|+|++|+|||++|++|||||+++|+| +|+.||+++++|+++.++++++|++|++.|
T Consensus 401 fPk~tG~~~~e~lgk~hFw~~fiG~nltFfPmh~lGl~GMPRR~~dY~~-~~~~~n~iss~Ga~i~~~~~~~f~~~~~~s 479 (535)
T MTH00026 401 FGKITGYAYKDIYGLIHFWLMFFGVNITFFPQHFLGLAGLPRRYADYPD-NFEDFNQISSFGSIISIIAVIWFVVVIFDA 479 (535)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1767285316789999999999999999999998536899888898667-799999999999999999999999999999
Q ss_pred HHCCCCC-----CCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 7449535-----689998999-----9710126998119989475960784
Q gi|254780473|r 530 FLNRSKL-----QDTIGDPWD-----GRTLEWSISSPSPQYNFAFTPIVST 570 (671)
Q Consensus 530 ~~~~~~~-----~~~~~dPW~-----~~tLEW~~~sPpp~~nF~~~P~v~~ 570 (671)
.+++|+. .+...|||+ ++||||+++||||+|||+++|+|.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~TLEW~~~SPPp~~NF~~~P~V~~ 530 (535)
T MTH00026 480 YYREEPFDINIFAKGPLTPFSCQSTHFDTLEWTLKTPPEHHTYNELPYIVG 530 (535)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 981776555622247778766778899960148999989877788883608
No 20
>MTH00079 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1365.41 Aligned_cols=503 Identities=37% Similarity=0.718 Sum_probs=491.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 4303000014799999999999999999999999999850767566776687898999999999999999999999-999
Q gi|254780473|r 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIM 133 (671)
Q Consensus 55 w~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~ 133 (671)
+++|+|||||||||++|++++++++++|+++|++||+||+.|+ ..+.++|.|||++|+||++|||+++||.+. ||+
T Consensus 4 ~~~wl~ttdHK~IGi~Yl~~~~~~~~~G~~~a~liR~eL~~p~---~~~~~~~~YN~l~T~Hg~iMIFf~vmP~l~ggfg 80 (508)
T MTH00079 4 LSVWLESSNHKDIGTLYFIFGLWSGMVGTSLSLIIRLELAKPG---LFLGNGQLYNSVITAHAILMIFFMVMPAMIGGFG 80 (508)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4124203788999999999999999999999999999872897---6777776999999999999999999999999989
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999864986400588999999999999999999997176778883134786558778852045887799999999987
Q gi|254780473|r 134 NFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTL 213 (671)
Q Consensus 134 n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll 213 (671)
||++|+|||||||||||+|++|||++++|+++++.|++.++++++|||.|||||+. .+|+.++|+|+++++++|+||++
T Consensus 81 NyliPlmIGA~DmAFPRLN~lSfWl~~~~~~ll~~S~~~~~g~~tGWt~YpPLS~~-~~~g~~vd~~i~~l~l~GiSSil 159 (508)
T MTH00079 81 NWMLPLMLGAPDMSFPRLNNLSFWLLPTSMFLILDSCFVDMGCGTSWTVYPPLSTE-GHPGSSVDLAIFSLHCAGISSIL 159 (508)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999975997530154788899999999999999944589899977416883367-89982289999999999999998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 55689999997236898831331566689999999999733357888998777632980114654321013221233340
Q gi|254780473|r 214 SGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293 (671)
Q Consensus 214 ~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fG 293 (671)
+++||++||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++||+|||++.||||+||||||||||
T Consensus 160 gaINfi~TI~~mRapGm~l~rmPlFvWs~lvts~Lllla~PvLa~a~~mll~DR~~~t~FF~p~~GGdpiL~QHLFWffG 239 (508)
T MTH00079 160 GSINFMVTTKNLRSSSISLEHMSLFVWTVFVTVFLLVLSLPVLAGAITMLLTDRNLNTSFFDPSGGGNPLIYQHLFWFFG 239 (508)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 67999988986178998815577999999999998872052889988898604556776758777876114300033158
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12579999879999999985310-56402668999999999999753322102247875889987653346788987799
Q gi|254780473|r 294 HPEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAK 372 (671)
Q Consensus 294 HPeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvk 372 (671)
||||||+|||++|++||++++++ |||+|||+.|++|+++|+++|+.||+|||||+|++++.|++|+++||+||||||+|
T Consensus 240 HPEVYIlILPafGiiS~ii~~~s~rk~iFGy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~F~~~Tm~IaiPTgik 319 (508)
T MTH00079 240 HPEVYILILPAFGIISQSTLYLTGKKEVFGSLGMVYAILSIGLIGCVVWAHHMYTVGMDLDSRAYFTAATMVIAVPTGVK 319 (508)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 97254232420467789988740688762549999999999841446510462607988018999998899885104789
Q ss_pred HHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99878742587302243799999999999988755653034321112127422044789999999999999999996244
Q gi|254780473|r 373 IFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPK 452 (671)
Q Consensus 373 iFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk 452 (671)
+|||++|+|+||+|+++||+|++||+.+|++||+|||++|++++|.++|||||||||||||+.+|++|++|||+|||+||
T Consensus 320 vF~Wi~Tl~~g~~~~~~pml~~lgfi~~F~iGG~TGv~la~~~~D~~~HdTYfVVaHFHyvl~~gavf~~f~g~yywfPk 399 (508)
T MTH00079 320 VFSWLATLFGMKMVFQPLLLWVLGFIFLFTIGGLTGVTLSNSSLDIILHDTYYVVSHFHYVLSLGAVFGIFTGISLWWSF 399 (508)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999984089778888899999999999843133010366432504057348861055466659999999999999998
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 30767471689999999999999999999998764053030025870057999999999999999999999999999744
Q gi|254780473|r 453 AFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532 (671)
Q Consensus 453 ~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~ 532 (671)
++||++||++||+|||+.++|+|++|+|||++|++|||||+++|+| +|+.||++||+|+++.++|+++|++|+++|+++
T Consensus 400 ~~G~~~~e~lgk~hFw~~fiG~nltF~Pmh~lGl~GMPRR~~dY~~-~~~~~n~ist~Ga~i~~~~~l~f~~~~~~s~~~ 478 (508)
T MTH00079 400 ITGFVYDKIMMSSVFFLMFIGVNLTFFPLHFAGLHGMPRKYGDYPD-VYSVWNVISSYGSMISVFALFLFIYVLLESFFS 478 (508)
T ss_pred HHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8530004889999999999999999999998636999878788727-799999999899999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 953568999899997101269981199894759
Q gi|254780473|r 533 RSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFT 565 (671)
Q Consensus 533 ~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~ 565 (671)
+|++.+ |||+++||||+++||||+|||++.
T Consensus 479 ~~~~~~---~~~~~~slEw~~~spp~~hnf~~~ 508 (508)
T MTH00079 479 YRLVLH---DNYINSSPEYSMSSYVFGHSYQSE 508 (508)
T ss_pred CCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 980567---999998703387798985588999
No 21
>MTH00048 COX1 cytochrome c oxidase subunit I; Provisional
Probab=100.00 E-value=0 Score=1336.50 Aligned_cols=507 Identities=32% Similarity=0.684 Sum_probs=490.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 344303000014799999999999999999999999999850767566776687898999999999999999999999-9
Q gi|254780473|r 53 YLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-G 131 (671)
Q Consensus 53 ~lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G 131 (671)
|++ +|++||||||||++|++++++++++|+++|++||+||+.|+ +++++||+|||++|+||++|||+++||.+. |
T Consensus 3 wl~-~w~~t~dHK~IG~~Yli~~l~~~~iGg~~alliR~eL~~p~---~~~~~~~~YN~~~T~HG~iMiF~~vmP~l~gg 78 (514)
T MTH00048 3 WLF-SWLFTLDHKRIGIIYSLLGVWSGFVGLSLSLLIRLNFLDPY---YNVIPLDVYNFLITNHGIIMIFFFLMPVLIGG 78 (514)
T ss_pred HHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 054-64401679999999999999999999999999999981875---35678248999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999998649864005889999999999999999999971767788831347865587788520458877999999999
Q gi|254780473|r 132 IMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGT 211 (671)
Q Consensus 132 ~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigs 211 (671)
|+||++|+|||||||||||+|++|||++++|+++++.|++.| +++|||.|||||+.+++||.|+|+++++++++|+||
T Consensus 79 fgNyliPlmiGa~DmaFPRLNa~SfWl~~~~~~~~~~s~~~g--~~~GWT~YpPLS~~~~~~g~g~d~~i~~l~l~giSS 156 (514)
T MTH00048 79 FGNYLLPLLLGLSDLNLPRLNALSAWLLVPSIVFLLLSMCLG--AGVGWTFYPPLSSSYFSSSVGVDFLMFSLHLAGVSS 156 (514)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 899999996599753005478878998999999999986217--888851616812025789831799999999999989
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHH
Q ss_conf 87556899999972368988313315666899999999997333578889987776329801146543210132212333
Q gi|254780473|r 212 TLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWI 291 (671)
Q Consensus 212 ll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~ 291 (671)
+++++||++||.+ |+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++|||++.||||+||||||||
T Consensus 157 ilgsiNfi~Ti~~-r~~~~~~~rmPlf~Ws~l~Ts~Lll~a~PvL~~a~~mll~DR~~gt~FF~p~~GGdp~L~QHLFWf 235 (514)
T MTH00048 157 LFGSINFICTLYS-AFMTNVFSRTSIILWAYLFTSILLLLSLPVLAAAITMLLFDRNFGSAFFDPLGGGDPVLFQHMFWF 235 (514)
T ss_pred HHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHH
T ss_conf 9989999999998-079985011539999999999999984259999999988144557767786779872354045100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4012579999879999999985310564-026689999999999997533221022478758899876533467889877
Q gi|254780473|r 292 WGHPEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTG 370 (671)
Q Consensus 292 fGHPeVYIliLPa~Gi~seiip~fs~kp-lfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTg 370 (671)
||||||||++|||+|++||++++++||| +|||++|++|+++|+++|+.||+|||||+|++++.+++|+.+||+||||||
T Consensus 236 fGHPEVYIliLPafGiiSeii~~~s~k~~iFGy~~mv~a~~~I~~lgf~VW~HHMFt~G~~~~~~~~Fs~~T~lIavPTg 315 (514)
T MTH00048 236 FGHPEVYVLILPGFGIISHICLSLSNNDDSFGYYGLLFAMFSIVCLGSVVWAHHMFTVGLDVKTAVFFSSVTMIIGVPTG 315 (514)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 58973632004227999999987407865133668999999998760146742446238871388998864578760025
Q ss_pred HHHHHHHHHHCCCCCEECHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999878742587302243799-999999999988755653034321112127422044789999999999999999996
Q gi|254780473|r 371 AKIFNWLFTMRLGKVRFEVPMM-WTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYW 449 (671)
Q Consensus 371 vkiFnwl~Tl~~G~ir~~~pml-~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW 449 (671)
+|+|||++|+|+||+|+++||+ |++||+++|++||+||+++|++++|.++|||||||||||||+.+|++|++|||+|||
T Consensus 316 ikiFnWi~Tl~~g~i~~~~p~l~f~~gfi~~F~iGGlTGv~la~~~~D~~~HdTyfVVaHFHyvl~~g~vf~~fag~yyw 395 (514)
T MTH00048 316 IKVFSWLYMLLNSRVRKSDPVVWWVVSFIVLFTIGGVTGIVLSASVLDNVLHDTWFVVAHFHYVLSLGSYSSVVIMFIWW 395 (514)
T ss_pred HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999984787043628999999999999835211021366533405168268984303366659999999999971
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24430767471689999999999999999999998764053030025870057999999999999999999999999999
Q gi|254780473|r 450 FPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVS 529 (671)
Q Consensus 450 ~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S 529 (671)
+||++||++|||+||+|||++++|+|++|+|||++|++|||||+++|+ ++++.||+++|+|++++++|++++++|++.|
T Consensus 396 ~Pk~tG~~~~e~lg~~hfw~~fiG~nltF~Pmh~lGl~GMPRR~~~Y~-~~~~~~N~istiGa~i~~~~~l~f~~~~~~s 474 (514)
T MTH00048 396 WPLITGLSLNKYLLQCHCIISMIGFNLCFFPMHYFGLCGLPRRVCIYE-PSYYWINVVSSVGSFISAFSGCFFVFILWES 474 (514)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 541315251579999999999999999999899865589988789885-6788789999999999999999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEECC
Q ss_conf 7449535689998999971012699811998-9475960784
Q gi|254780473|r 530 FLNRSKLQDTIGDPWDGRTLEWSISSPSPQY-NFAFTPIVST 570 (671)
Q Consensus 530 ~~~~~~~~~~~~dPW~~~tLEW~~~sPpp~~-nF~~~P~v~~ 570 (671)
+++|||++| |||+++|+||+++||||+| ||+++|.-.|
T Consensus 475 ~~~g~~~~~---~~~~~~~lew~~~sPpp~hn~~~~~p~~~~ 513 (514)
T MTH00048 475 LVVGNRVLG---LWGSSSCVVNVLTSPVPYHNDYFCYPYNVD 513 (514)
T ss_pred HHHCCCCCC---CCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 984980578---999987731314899984356556765688
No 22
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=100.00 E-value=0 Score=1276.95 Aligned_cols=485 Identities=42% Similarity=0.842 Sum_probs=476.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 014799999999999999999999999999850767566776687898999999999999999999999-9999999986
Q gi|254780473|r 62 VDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GIMNFVVPLQ 140 (671)
Q Consensus 62 ~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n~lvPl~ 140 (671)
|||||||++|++++++++++|+++|++||+||+.|+ ++++++|+|||++|+||++|||+++||.+. ||+||++|+|
T Consensus 1 TdHK~IGi~Yl~~~~~~~~~Gg~~alliR~qL~~p~---~~~~~~~~Yn~~~T~HG~iMiF~~~~P~l~ggfgNylvPl~ 77 (488)
T cd01663 1 TNHKDIGTLYLIFGLWSGLVGTSLSLLIRLELSQPG---SQLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLM 77 (488)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 986999999999999999999999999999980887---66769999999999999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49864005889999999999999999999971767788831347865587788520458877999999999875568999
Q gi|254780473|r 141 IGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVV 220 (671)
Q Consensus 141 iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~ 220 (671)
||||||||||+|++|||++++|+++++.|++.++++++|||+|||||+.+++|+.++|+|++|+++.|+||+++++|+++
T Consensus 78 iGarDmAFPRlN~lsfWl~~~g~~ll~~s~~~~~g~~~GWt~YpPLs~~~~~~g~~~d~~i~~l~l~gissilg~iNfi~ 157 (488)
T cd01663 78 IGAPDMAFPRLNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFIT 157 (488)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69962012658888999977888987755513787887622503643456889741899999999999999998999999
Q ss_pred HHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99972368988313315666899999999997333578889987776329801146543210132212333401257999
Q gi|254780473|r 221 TIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL 300 (671)
Q Consensus 221 TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIl 300 (671)
||+|||+|||+++|||+|+|+.++|++++++++|+|+++++|+++||++|++||+++.||||+|||||||+||||||||+
T Consensus 158 Ti~~~RapGm~~~rmPlf~W~~l~ts~l~l~a~PvL~~a~~mll~Dr~~gt~Ff~~~~GGdp~L~qhLFWffGHPeVYil 237 (488)
T cd01663 158 TIFNMRAPGMTLEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYIL 237 (488)
T ss_pred HHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 89972888998644889999999999999998189999999998244457502367778754689999998399758998
Q ss_pred HHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9879999999985310-564026689999999999997533221022478758899876533467889877999987874
Q gi|254780473|r 301 VLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFT 379 (671)
Q Consensus 301 iLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~T 379 (671)
+|||+|++||++|+++ |||+|||+.+++|+++|+++|+.||+||||++|++++.|.+|+++||+|+||||+|+|||++|
T Consensus 238 iLPa~Giiseii~~~s~rkplfgy~~~v~a~~~i~~lsf~VW~HHmft~G~~~~~~~~f~~~T~~IaiPtgvkvf~w~~T 317 (488)
T cd01663 238 ILPGFGIISHIISTFSGKKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKVFSWLAT 317 (488)
T ss_pred ECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24337889999998618873314079999999999999787240000678988899999999999986679999999999
Q ss_pred HCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 25873022437999999999999887556530343211121274220447899999999999999999962443076747
Q gi|254780473|r 380 MRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLN 459 (671)
Q Consensus 380 l~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~ 459 (671)
+|+||+|+++||+|+++|+++|++||+||+++|+.++|.++||||||||||||++.+|++++++||+|||+||+|||++|
T Consensus 318 l~~g~~~~~~p~l~~l~fi~~F~iGG~TGv~la~~~~D~~~HdTyfVVaHFHyvl~~g~vf~~~ag~yyw~Pk~tGr~~~ 397 (488)
T cd01663 318 MWGGSIKFETPMLWALGFIFLFTIGGLTGVVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAIFAGFYYWFPKITGLSYN 397 (488)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 83785223638999999999997204011541666446453685588842145788799999999999984887374520
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 16899999999999999999999987640530300258700579999999999999999999999999997449535689
Q gi|254780473|r 460 SFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDT 539 (671)
Q Consensus 460 e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~~~ 539 (671)
||+||+|||++++|+|++|+|||++|++|||||+++|++ ++++||+++|+|++++++|++++++|+++|+|+|||+++
T Consensus 398 e~lg~~~f~~~~iG~~l~F~pmh~~Gl~GmPRR~~~Y~~-~~~~~n~istiGa~i~~~~~l~f~~n~~~S~~~g~~a~~- 475 (488)
T cd01663 398 ETLGKIHFWLMFIGVNLTFFPQHFLGLAGMPRRYPDYPD-AYAGWNMISSIGSLISFVSVLLFLFIVWESFVSGRKVIF- 475 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_conf 789999999999999999999999865899874677747-689999999999999999999999999999863880779-
Q ss_pred CCCCCC-CCCCCCCC
Q ss_conf 998999-97101269
Q gi|254780473|r 540 IGDPWD-GRTLEWSI 553 (671)
Q Consensus 540 ~~dPW~-~~tLEW~~ 553 (671)
|||+ ++||||+.
T Consensus 476 --npw~~~~tLEW~v 488 (488)
T cd01663 476 --NVGEGSTSLEWTL 488 (488)
T ss_pred --CCCCCCCCCCCCC
T ss_conf --9999999853359
No 23
>cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges co
Probab=100.00 E-value=0 Score=1258.56 Aligned_cols=500 Identities=60% Similarity=1.154 Sum_probs=492.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30000147999999999999999999999999998507675667766878989999999999999999999999999999
Q gi|254780473|r 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVV 137 (671)
Q Consensus 58 wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lv 137 (671)
|+|||||||||++|++++++++++|+++|++||+||+.|+ .+++++|+|||++|+||++|+|++++|++.|++||++
T Consensus 1 w~~t~~hk~ig~~Ylv~~~~~~~~G~~~alliR~qLa~p~---~~~l~~~~Yn~~~T~Hg~~Mif~~~~p~~~g~~nylv 77 (501)
T cd01662 1 WLTTVDHKRIGIMYIITAFVFFLRGGVDALLMRTQLALPG---NDFLSPEHYNQIFTMHGTIMIFLFAMPLVFGLMNYLV 77 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9866558999999999999999999999999999983876---4579966734212798999999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98649864005889999999999999999999971767788831347865587788520458877999999999875568
Q gi|254780473|r 138 PLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGIN 217 (671)
Q Consensus 138 Pl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iN 217 (671)
|+|+|||||||||+|++|||++++|.++++.|++.|+++++|||.|||||+.+++|+.++|+|++|++++|+||+++++|
T Consensus 78 Pl~igardmafPrln~~sfWl~~~g~~l~~~s~~~g~~~~~gWt~YpPLs~~~~~~~~~~~~~~~gl~l~gvssil~~in 157 (501)
T cd01662 78 PLQIGARDVAFPRLNALSFWLFLFGGLLLNASLLIGGFPDAGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAIN 157 (501)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99849985300889999999999999999999855887778832166820146798521999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999972368988313315666899999999997333578889987776329801146543210132212333401257
Q gi|254780473|r 218 LVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEV 297 (671)
Q Consensus 218 fi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeV 297 (671)
+++||.|+|+|||+++|+|+|+|+.++|++++++++|+++++++++++||++|++||++..||||+|||||||+||||||
T Consensus 158 fi~Ti~~~R~~g~~~~~~Plf~w~~l~t~~l~l~a~pvl~~a~~~ll~dr~~~~~ff~~~~Ggdp~L~q~LFWffGHpeV 237 (501)
T cd01662 158 FIVTILKMRAPGMTLMRMPIFTWTTLVTSILILFAFPVLTAALALLELDRYFGTHFFTNALGGNPMLWQHLFWIFGHPEV 237 (501)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 99999986589999676654888999999999986559999988886330368753574558655576544776488429
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998799999999853105640266899999999999975332210224787588998765334678898779999878
Q gi|254780473|r 298 YILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWL 377 (671)
Q Consensus 298 YIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl 377 (671)
||+++|++|++||++|+++|||+|||+.+++|+++|+++|+.||+||||++|++++.+.+|+++|++|++|||+|+|||+
T Consensus 238 Yi~ilPa~G~i~~iip~~s~kplfs~~~~i~a~~~i~~l~~~Vw~HHmf~~g~~~~~~~~f~~~T~~IavPtgikvfnwl 317 (501)
T cd01662 238 YILILPAFGIFSEIVPTFSRKPLFGYRSMVYATVAIGFLSFGVWVHHMFTTGAGALVNAFFSIATMIIAVPTGVKIFNWL 317 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998899999999887502327888999999999999971523423122787589999999999999998899999999
Q ss_pred HHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 74258730224379999999999998875565303432111212742204478999999999999999999624430767
Q gi|254780473|r 378 FTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQ 457 (671)
Q Consensus 378 ~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~ 457 (671)
+|+|+||+|+++||+|+++|+++|++||+||+++|+.++|.++||||||||||||++.+|+++++|||+|||+||++||+
T Consensus 318 ~Tl~~g~i~~~~p~l~~~~fi~~F~iGG~tGv~~a~~~~d~~~H~T~~VvaHFH~vl~gg~v~~~~a~~yyw~P~~~Gr~ 397 (501)
T cd01662 318 FTMWRGRIRFETPMLWAIGFLVTFVIGGLTGVMLASPPADFQVHDTYFVVAHFHYVLIGGVVFPLFAGFYYWFPKMFGRM 397 (501)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98079987788899999999999987555610004653221547751788878877611799999999999878876767
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4716899999999999999999999987640530300258-700579999999999999999999999999997449535
Q gi|254780473|r 458 LNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE-DTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKL 536 (671)
Q Consensus 458 l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~-~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~ 536 (671)
+|||++|+|||++++|+|++|+|||++|++|||||+++|+ +++|++||+++++|++++++|+++|++|+++|+++|||.
T Consensus 398 ~~~~l~~~~fwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~~~~~~~~n~~ss~G~~i~~~~~~~f~~~~~~s~~~g~~~ 477 (501)
T cd01662 398 LNERLGKWSFWLWFIGFNLTFFPMHILGLMGMPRRVYTYLPGPGWDPLNLISTIGAFLIAAGVLLFLINVIVSIRKGKRD 477 (501)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 06699999999999999999999999865898774556899606799999999999999999999999999999808877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68999899997101269981199894
Q gi|254780473|r 537 QDTIGDPWDGRTLEWSISSPSPQYNF 562 (671)
Q Consensus 537 ~~~~~dPW~~~tLEW~~~sPpp~~nF 562 (671)
+++||||++||||+++||||+|||
T Consensus 478 --~~~npw~~~tlEW~~~spp~~~nf 501 (501)
T cd01662 478 --ATGDPWGARTLEWATSSPPPAYNF 501 (501)
T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf --889999999836698998998788
No 24
>cd00919 Heme_Cu_Oxidase_I Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from
Probab=100.00 E-value=0 Score=1001.92 Aligned_cols=463 Identities=49% Similarity=0.965 Sum_probs=456.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47999999999999999999999999998507675667766878989999999999999999999999999999986498
Q gi|254780473|r 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGA 143 (671)
Q Consensus 64 HK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGa 143 (671)
|||||++|++++++++++|+++|++||.|++.|. .++++++.|||++|+||++|+|++++|+..|++||++|+|+|+
T Consensus 1 hk~ig~~y~~~a~~~~~~g~~~~ll~R~~l~~p~---~~~~~~~~Y~~~~T~HG~~mif~~~~~~~~g~~~~~~~~~ig~ 77 (463)
T cd00919 1 HKDIGLLYLIFAFVALLLGGLLALLIRLELATPG---SLFLDPQLYNQLVTAHGVIMIFFFVMPAIFGGFGNLLPPLIGA 77 (463)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9159999999999999999999999999984887---7788999999999999999999999999999999999997499
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64005889999999999999999999971767788831347865587788520458877999999999875568999999
Q gi|254780473|r 144 RDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTII 223 (671)
Q Consensus 144 rdlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~ 223 (671)
||++|||+|++|||+++.|.++++.|++.|+.+++|||+|||||...++++.++|+|++|+++.++|++++++|+++|+.
T Consensus 78 ~dla~Prln~~s~wl~~~g~~l~~~s~~~g~~~~~gwT~Y~Pl~~~~~~~~~~~~~~~~g~~l~~v~s~l~~in~~~Ti~ 157 (463)
T cd00919 78 RDLAFPRLNNLSFWLFPPGLLLLLSSVLVGGGAGTGWTFYPPLSTLSYSSGVGVDLAILGLHLAGVSSILGAINFITTIL 157 (463)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74210889999999877777784734303778877627735730134788850799999999999999999999999999
Q ss_pred HHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72368988313315666899999999997333578889987776329801146543210132212333401257999987
Q gi|254780473|r 224 KMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLP 303 (671)
Q Consensus 224 ~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLP 303 (671)
++|+|||+++|+|+|+|+.++|++++++++|+++++++++++||+++++||++..||||++||||||+|||||||++++|
T Consensus 158 ~~R~~g~~~~~~pl~~w~~~~t~il~~~~~p~l~~~~~~~l~d~~~~~~f~~~~~gg~~ll~~~LfW~fGHp~Vyi~ilP 237 (463)
T cd00919 158 NMRAPGMTLDKMPLFVWSVLVTAILLLLALPVLAAALVMLLLDRNFGTSFFDPAGGGDPVLYQHLFWFFGHPEVYILILP 237 (463)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 83869998111639999999999999999778888888887420247322346678771055543465078712213966
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999853105640266899999999999975332210224787588998765334678898779999878742587
Q gi|254780473|r 304 AFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLG 383 (671)
Q Consensus 304 a~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G 383 (671)
++|++||++|+++|||+|||+.+++|+.+++++|+.||.||||++|.+++.+.+|++.|++|++||++|+|||+.|+|++
T Consensus 238 a~g~~~~iip~~~~rpl~s~~~~~~a~~~i~~~~~~vw~HHmf~~g~~~~~~~~~~~~T~~i~iPs~~~~f~~~~Tl~~~ 317 (463)
T cd00919 238 AFGAISEIIPTFSGKPLFGYKLMVYAFLAIGFLSFLVWAHHMFTVGLPVDTRAYFTAATMIIAVPTGIKVFNWLATLWGG 317 (463)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 77568764498608984107999999999999997762133226788589999999999999876899999999876147
Q ss_pred CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 30224379999999999998875565303432111212742204478999999999999999999624430767471689
Q gi|254780473|r 384 KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWG 463 (671)
Q Consensus 384 ~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lg 463 (671)
++|+++|++|+++++..|++||+||+++|+.+.|.++||||||||||||++.++++++.+|++|||+||++||++|||++
T Consensus 318 ~~~~~~~~~~~~~~i~~f~~GG~tGi~~a~~~~d~~~H~T~~VvgHFH~~~~~~~~~~~~~~~y~~~P~~~gr~~~~~l~ 397 (463)
T cd00919 318 RIRFDPPMLFALGFLFLFTIGGLTGVVLANVPLDIVLHDTYYVVAHFHYVLSGGVVFAIFAGLYYWFPKMTGRMLSEKLG 397 (463)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 60146079999999999997445505303655573525875898888874887999999999999999996751328999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999987640530300258700579999999999999999999999999997
Q gi|254780473|r 464 KVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSF 530 (671)
Q Consensus 464 k~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~ 530 (671)
|+|||++++|++++|+|||++|++|||||+++|+ ++|+++|+++|+|++++.+|++++++|+++|.
T Consensus 398 ~~~fwl~~iG~~~~~~~m~~~Gl~G~pRR~~~~~-~~~~~~~~~~tvga~i~~~~~~~f~~~l~~s~ 463 (463)
T cd00919 398 KIHFWLWFIGFNLTFFPMHFLGLLGMPRRYADYP-DGFAPWNFISSVGAFILGLGLLLFLGNLFLSL 463 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999986489863246786-77899999999999999999999999999979
No 25
>cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.
Probab=100.00 E-value=0 Score=913.30 Aligned_cols=448 Identities=22% Similarity=0.382 Sum_probs=419.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47999999999999999999999999998507675667766878989999999999999999999999999999986498
Q gi|254780473|r 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGA 143 (671)
Q Consensus 64 HK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGa 143 (671)
.||||++|+++|++++++|+++|++||.|++.|. +++.+||+|||++|+||++|+|++++|++.|++||++|+++ +
T Consensus 2 ~K~igl~y~v~~~~~~~~gg~~all~r~~~~~~~---~~~~~~~~Yn~~~T~Hg~~Mif~~~~~~~~G~~~~l~~~~~-~ 77 (473)
T cd01660 2 EKKLALAHFVVAFLALLLGGLFGLLQVLVRTGVF---PLPSSGILYYQGLTLHGVLLAIVFTTFFIMGFFYAIVARAL-L 77 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_conf 5501399999999999999999999999971886---56898327788679999999999999999999999999980-9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64005889999999999999999999971767788831347865587788520458877999999999875568999999
Q gi|254780473|r 144 RDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTII 223 (671)
Q Consensus 144 rdlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~ 223 (671)
||+++||+|++|||+++.|.+++..|++.|+ +++|||.||||++. +.+.+++.+.++|+++.++|++.|+.
T Consensus 78 ~~~~~prl~~~~fwl~~~g~~l~~~s~~~G~-~~~gwt~Y~PL~~~--------~~~~~g~~l~~v~~~l~~~~~~~t~~ 148 (473)
T cd01660 78 RSLFNRRLAWAGFWLMVIGTVMAAVPILLGQ-ASVLYTFYPPLQAH--------PLFYIGAALVVVGSWISGFAMFVTLW 148 (473)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCEECCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8775289999999999999999999996588-88887027842001--------45899999999999999999999999
Q ss_pred HHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72368988313315666899999999997333578889987776329801146543210132212333401257999987
Q gi|254780473|r 224 KMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLP 303 (671)
Q Consensus 224 ~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLP 303 (671)
++|+++.. +|+|+|+|+.++++++++++.|+++++..++.+||+++. ..||||+|||||||+|||||||++++|
T Consensus 149 ~~r~~~~~-~~~pl~~~~~~~~~~l~~~~~~~l~~~~l~~~~~~~~~~-----~~~~dp~l~qhLFWffGHpeVyi~ilP 222 (473)
T cd01660 149 RWKKANPG-KKVPLATFMVVTTMILWLVASLGVALEVLFQLLPWSLGL-----VDTVDVLLSRTLFWWFGHPLVYFWLLP 222 (473)
T ss_pred HHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99636988-876199999999999999999999999999999887177-----678679999999999254689999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 999999998531056402668999999999999753322102247-87588998765334678898779999878742--
Q gi|254780473|r 304 AFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTM-GSGANVNAFFGIMTMVIAVPTGAKIFNWLFTM-- 380 (671)
Q Consensus 304 a~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~-G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl-- 380 (671)
++|++||++|+++|||+|||+.+++|+++++++|+.||.||||++ |++++.+.+|+++|++|+|||++|+|||+.|+
T Consensus 223 a~g~~~~iip~~~~kpif~~~~~~~a~~~i~~l~~~vw~HHmf~~~g~~~~~~~~~~~~T~~iavPt~v~vf~~~~Tl~~ 302 (473)
T cd01660 223 AYIAWYTILPKIAGGKLFSDPLARLAFILFLLFSTPVGFHHQFADPGIGPGWKFIHMVLTFMVALPSLLTAFTVFASLEI 302 (473)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987338873100799999999999999961335315778668999999999999999876999999999875
Q ss_pred ------------CCCCCEECHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------5873022437999999-999999887556530343211121274220447899999999999999999
Q gi|254780473|r 381 ------------RLGKVRFEVPMMWTLG-FMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIV 447 (671)
Q Consensus 381 ------------~~G~ir~~~pml~~lg-fi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiy 447 (671)
|.+++++++|+++++. ++..|++||+||+++|+.++|.++||||||||||||++.|+++++.+|++|
T Consensus 303 ~~~~~~~~~~~~w~~~l~~~~p~~~~~~~~i~~F~iGG~tGv~la~~~~d~~~HdTy~VvaHFH~~l~g~~~~~~~g~~Y 382 (473)
T cd01660 303 AGRLRGGKGLFGWIRALPWGDPMFLALFLAMLMFIPGGAGGIINASYQLNYVVHNTAWVPGHFHLTVGGAVALTFMAVAY 382 (473)
T ss_pred HCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 11235663031120005789889999999999999998887810376766555485599975323288899999999999
Q ss_pred HHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC------CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96244307674-716899999999999999999999987640530300258------70057999999999999999999
Q gi|254780473|r 448 YWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE------DTTLQVYYVVALLGAVLIGIGVF 520 (671)
Q Consensus 448 yW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~------~~~~~~~n~istiGa~l~~~g~l 520 (671)
||+||++||++ |||++|+|||++++|+|++|+|||++|++|||||+++|+ .++|++||+++++|++++++|.+
T Consensus 383 ~~~P~~~Gr~~~~~~L~~~hfwl~~iG~~l~f~pm~~~Gl~GmpRR~~~~~~~~~~~~~~~~~~n~i~siG~~l~~~g~l 462 (473)
T cd01660 383 WLVPHLTGRELAAKRLALAQPWLWFVGMTIMSTAMHVAGLLGAPRRTAEAQYGGLPAAGEWAPYQQLMAIGGTILFVSGA 462 (473)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999938866412799999999999999999999998737897746355667666527789999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999997
Q gi|254780473|r 521 SFVLSFIVSF 530 (671)
Q Consensus 521 ~f~~nl~~S~ 530 (671)
+|++|+++|+
T Consensus 463 ~f~~ni~~Sl 472 (473)
T cd01660 463 LFLYILFRTL 472 (473)
T ss_pred HHHHHHHHHH
T ss_conf 9999999985
No 26
>pfam00115 COX1 Cytochrome C and Quinol oxidase polypeptide I.
Probab=100.00 E-value=0 Score=878.61 Aligned_cols=441 Identities=49% Similarity=0.949 Sum_probs=427.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47999999999999999999999999998507675667766878989999999999999999999999999999986498
Q gi|254780473|r 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGA 143 (671)
Q Consensus 64 HK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGa 143 (671)
|||||++|+++|++++++|+++|+++|.|++.|+ ...+++.|||++|+||..|+|++++|++.|++||++|+|+|+
T Consensus 1 hk~i~~~y~~~a~~~~~ig~i~gll~r~~l~~p~----~~~~~~~y~~~~t~Hg~~mif~~~~~~~~g~~~ylvp~~~g~ 76 (444)
T pfam00115 1 HKQIGLLYLVTALVFFLIGGILGLLIRLQLAFPD----FLSPDATYNQLRTLHGNLMIFWWAMPALIGLGNYLVPLMLGA 76 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9079999999999999999999999999983897----668866789899999999999999999999999999999099
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64005889999999999999999999971767-78883134786558778852045887799999999987556899999
Q gi|254780473|r 144 RDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEF-ASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTI 222 (671)
Q Consensus 144 rdlaFPrlna~sfWl~~~g~~l~~~S~~~g~~-~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI 222 (671)
||+++||+|++|||++++|.++++.|++.|+. +++|||.|||||+.+++ ++|+|.+++.++++|++++++|+++||
T Consensus 77 ~dl~~prl~~~~fwl~~~g~~l~~~s~~~g~~~~~~~wt~ypPLs~~~~~---~~~~~~~~l~l~~v~~ll~~in~i~Ti 153 (444)
T pfam00115 77 RDLAFPRLNALSFWLLVVGGLLALVSLLLGGGAPGRGWTEYPPLSSTSSS---PVDLWILGLLLVGIGSLLGAINFIVTI 153 (444)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74445689999999999999999998730778888880106774335566---628999999999999999999999999
Q ss_pred HHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97236898831331566689999999999733357888998777632980114654321013221233340125799998
Q gi|254780473|r 223 IKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVL 302 (671)
Q Consensus 223 ~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliL 302 (671)
.|+|+||+++.|+|+|+|+.++|+++.+.++|+++++..++.+||+++++||+ |||++|||+||+|||||||++++
T Consensus 154 ~~~r~~g~~~~~~pl~~w~~~~t~il~~~~~p~l~~~~~~~~~~~~~~~~~~~----~~~~l~~~lfW~fgHp~Vy~~~~ 229 (444)
T pfam00115 154 LKRRAPGMTLSRMPLFVWSLLATAILILFAFPVLAVALLMLLLDRNFGTSFFG----GDPLLYQHLFWFFGHPEVYILIL 229 (444)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEC----CCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 97176788732333999999999999999988778888888765214601147----87099999999844871477899
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 79999999985310564026689999999999997533221022478758899876533467889877999987874258
Q gi|254780473|r 303 PAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRL 382 (671)
Q Consensus 303 Pa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~ 382 (671)
|++|++||++|+++|||+|||+.+++++.++.++|+.||.||||++|+|++.+..+++.|+++++|+++|+|||+.|+|+
T Consensus 230 pa~g~~y~iip~~~~~~~~s~~~~~~a~~~i~~~~~~v~~HHl~~~g~p~~~~~~~~~~t~~i~iP~~~~~~~~~~t~~~ 309 (444)
T pfam00115 230 PAFGIVSYILPKFSGKPLFGYKWMVLAFWAIALLSFLVWGHHMFTSGLPPWWRAFFSVFSMLIAIPTGLKVFNWLATLWG 309 (444)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999988851787403889999999999985001120101578978999999999999998899999999988615
Q ss_pred CCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 73022437999999999999887556530343211121274220447899999999999999999962443076747168
Q gi|254780473|r 383 GKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFW 462 (671)
Q Consensus 383 G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~l 462 (671)
+|+|++.|++|++++++.|++||+||+++|++++|.++|||+|||||||+++.|+++++.+|++|||+||++||++|||+
T Consensus 310 ~~~~~~~~~~~~~~~~~~f~~gg~~G~~~a~~~~n~~~H~T~~vvgHfH~~~~g~~~~~~~g~~y~~~P~l~gr~~~~~l 389 (444)
T pfam00115 310 GRIRFNPPMLFALGFIVLFTIGGLTGVLLALPPVDYYLHDTYFVVAHFHYVLYGGAVFALFAGIYYWFPKLTGRMYNERL 389 (444)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 78787848899999999997303103530122555655588567225889999999999999999999999488525899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999876405303002587--00579999999999999
Q gi|254780473|r 463 GKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYED--TTLQVYYVVALLGAVLI 515 (671)
Q Consensus 463 gk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~--~~~~~~n~istiGa~l~ 515 (671)
+|+|||++++|++++|+|||++|++|||||+++|++ .+++|||+++++|++++
T Consensus 390 ~~~~fwl~~iG~~~~~~~~~~~G~~G~~rR~~~~~~~~~~~~~~~~~~~ig~~l~ 444 (444)
T pfam00115 390 GKLHFWLLFIGFNLTFFPLHIAGLLGMPRRVPDYPPSVFALEPWNLLRTIGGFLM 444 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999847676534557870778999999999999869
No 27
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=100.00 E-value=0 Score=651.07 Aligned_cols=435 Identities=17% Similarity=0.237 Sum_probs=392.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79999999999999999999999999985076756677668789899999999999999999999999999999864986
Q gi|254780473|r 65 KKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGAR 144 (671)
Q Consensus 65 K~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGar 144 (671)
.++=.+|++.+++++++|++.++++|.||+.|+-.. -.+-.+|||++|+|++.|||.++.|...|++||++|+++|+|
T Consensus 44 ~~~v~~f~i~s~~w~~vG~l~gl~~a~~L~~P~~~~--~~~~ltfgrlr~~Htn~~ifgw~~~a~~g~a~ylvPr~~~t~ 121 (493)
T cd01661 44 DGPVFVGVIATMFWGLVGSLVGLIAALQLAEPDLLF--DLAWLSFGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRAR 121 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 276999999999999999999999999992876445--785415321268788999999999999999999999995982
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40058899999999999999999999717677888313478655877885204588779999999998755689999997
Q gi|254780473|r 145 DVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIK 224 (671)
Q Consensus 145 dlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~ 224 (671)
+++||+|+++||++.+|.++..+|++.|. ++++++.++| |...+.+. ++.++.++|++.||.|
T Consensus 122 -l~~~~L~~~~fw~~~~g~~l~~~~~~~G~-t~g~Ey~E~p--------------w~idi~i~-v~~~~~~~~~~~Ti~~ 184 (493)
T cd01661 122 -LAGGNLAWFVFWGYNLFIVLAATGYLLGI-TQGKEYAEPE--------------WYVDLWLT-VVWVAYLLPFLGTLLR 184 (493)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHCCH--------------HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf -68752899999999999999999997358-7996520252--------------99999999-9999999999999997
Q ss_pred HCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23689883133156668999999999973335788899877763298011465432101322123334012579999879
Q gi|254780473|r 225 MRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPA 304 (671)
Q Consensus 225 ~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLPa 304 (671)
+|+|+| .+..|..+++ ++.+|.+.....+...++.++.++|+...|+++.++| |+|||||||+++.|.
T Consensus 185 rr~~~i-----yvs~W~~la~----li~~~~l~~~~~l~~~~~~~~~~~~~~~~Gv~~a~~~---WwfgH~~V~~~ltp~ 252 (493)
T cd01661 185 RKEPHI-----YVANWYYLAF----IVTVAVLHIVNNLAVPVSWFGSKSYSAHAGVQDATTQ---WWYGHNAVGFFLTAG 252 (493)
T ss_pred CCCCCE-----EHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH---HHHHCHHHHHHHHHH
T ss_conf 169960-----3369999999----9999999999887887887312313535342766888---765142899999999
Q ss_pred -HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -9999999853105640266899999999999975332210224787588998765334678898779999878742587
Q gi|254780473|r 305 -FGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLG 383 (671)
Q Consensus 305 -~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G 383 (671)
+|++||++|+++|||+|||+..+++..++++++..+|.|||+++|+|.+.+.++++.|+++.+|+++|++||+.|++++
T Consensus 253 ~lgi~yy~lPk~~~rPi~sy~l~vi~fwal~~~~~~~g~HH~~~~~~P~w~~~~~~v~S~l~~vP~~~~~~N~~~Tl~g~ 332 (493)
T cd01661 253 FLAMMYYFLPKIAERPVYSYRLSIIGFWALAFLYIWAGPHHLHYTALPDWLQTLGMVFSVMLWMPSWAGMINGLLTLRGA 332 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999819862543299999999999999875627305780789999999999999998999999999999842
Q ss_pred --CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCH
Q ss_conf --30224379999999999998875565303432111212742204478999999999999999999624430767-471
Q gi|254780473|r 384 --KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQ-LNS 460 (671)
Q Consensus 384 --~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~-l~e 460 (671)
++|.+.+++|.+.++..|++||++|+++|.+++|.+.|||||+|||||+++.|+.+|..||++|||+||++||+ +||
T Consensus 333 w~~~~~~~~l~f~~~~~~~y~~~g~~G~~~a~~~vn~~~H~T~~vvaH~H~~~~G~~~~~~fg~iYy~~Prl~gr~~~s~ 412 (493)
T cd01661 333 WDKLRTDPTLRFMVVGGAFYGLSTFEGSFMAIRAVNSLSHYTDWTVGHVHLGALGWVGFITFGAIYFLVPRIWKREWPSP 412 (493)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 12556668999999999999999763897511556678236541188999999999999999999999999839963028
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHCCCCC-C---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899999999999999999999987-6405303002587-0---------057999999999999999999999999999
Q gi|254780473|r 461 FWGKVSFWCWFVGFYLAFMPLYALG-LKGVTRRLSQYED-T---------TLQVYYVVALLGAVLIGIGVFSFVLSFIVS 529 (671)
Q Consensus 461 ~lgk~~Fwl~~iGf~l~F~pm~~lG-l~GmpRR~~~y~~-~---------~~~~~n~istiGa~l~~~g~l~f~~nl~~S 529 (671)
|++|+|||+.++|+++++++||++| ++||+||.+++++ . ...||+.++++|+.++.+|.++|++|+++|
T Consensus 413 ~L~~~hFWl~~iG~~~~~~~m~~aGi~QG~~~r~~~~~g~~~~~f~~~v~~~~p~~~~R~~gG~l~~~G~l~f~yN~~~t 492 (493)
T cd01661 413 KLVEWHFWLATIGIVIYFVAMWISGILQGLMWRDYDSDGFLVYSFIESVQATHPYYIARSVGGLLMLSGALVMAYNFWMT 492 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999976887402657664688999999873299999999999999999999999840
Q ss_pred H
Q ss_conf 7
Q gi|254780473|r 530 F 530 (671)
Q Consensus 530 ~ 530 (671)
+
T Consensus 493 i 493 (493)
T cd01661 493 I 493 (493)
T ss_pred C
T ss_conf 9
No 28
>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I; InterPro: IPR004677 This family represents the largest subunit, I, of the ccb3-type cytochrome c oxidase 1.9.3.1 from EC, with two protohemes and copper. It shows strong homology to subunits of other types of cytochrome oxidases. Species with this type, all from the proteobacteria so far, include Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Rhodobacter sphaeroides, Rhizobium leguminosarum, and others.; GO: 0004129 cytochrome-c oxidase activity, 0006118 electron transport, 0045278 plasma membrane respiratory chain complex IV.
Probab=100.00 E-value=6.3e-42 Score=302.66 Aligned_cols=451 Identities=18% Similarity=0.264 Sum_probs=369.4
Q ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 014-799999999999999999999999999850767566776687--89899999999999999999999999999999
Q gi|254780473|r 62 VDH-KKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDA--HHYDQIFTAHGVIMIFFVAMPMITGIMNFVVP 138 (671)
Q Consensus 62 ~dH-K~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~--~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvP 138 (671)
.|- .+|-.++++....++++|.+-++.+-.||+.|+-+-++ +++ .+|-++--.|-..-||.|.---+.|=..|++-
T Consensus 3 y~Y~d~vvr~f~ia~v~wGiVGmLvGvv~Af~L~fPaLnlS~-I~~~y~~FGrLRPLHTnAVIfaFgg~GliatsyYvvQ 81 (485)
T TIGR00780 3 YDYMDSVVRLFLIATVVWGIVGMLVGVVVAFQLSFPALNLSD-IAGEYGIFGRLRPLHTNAVIFAFGGGGLIATSYYVVQ 81 (485)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 524789998787743432167789999999986056456011-3565235786686502366653222215544667656
Q ss_pred H--HCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--649864005-8899999999999999999999717677888313478655877885204588779999999998755
Q gi|254780473|r 139 L--QIGARDVSF-PFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSG 215 (671)
Q Consensus 139 l--~iGardlaF-Prlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~ 215 (671)
+ .|-+..-.| -.+.++.||++..=.++..+|++.|- |. +++|.+- -|-+...+. +.-.+-+
T Consensus 82 RvlkiT~~~rlfgg~~~~f~FWgw~~~ivlav~s~~~G~------TQ-----sKEYAEl----~Wp~Di~~~-vvWV~y~ 145 (485)
T TIGR00780 82 RVLKITYAQRLFGGIVGLFVFWGWQILIVLAVISLILGL------TQ-----SKEYAEL----EWPVDILVT-VVWVLYA 145 (485)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CC-----CCCCCCC----CCHHHHHHH-HHHHHHH
T ss_conf 576651113511136899998999999999999997246------66-----7300364----405899999-9999999
Q ss_pred HHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 689999997236898831331566689999999--999733357888998777632980114654321013221233340
Q gi|254780473|r 216 INLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIM--IIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293 (671)
Q Consensus 216 iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil--~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fG 293 (671)
+||+.||.|+|.|- .-+-.|.-+.+-+- ++--+-.|.+-.-++. |.---.+-...-.|.++-|=| |.||
T Consensus 146 ~vffGti~~Rke~~-----IYVa~WfY~~fiv~iA~lhIvNNlsiP~~l~~-DmGsv~kS~~~ySG~~DA~~Q---WWyG 216 (485)
T TIGR00780 146 VVFFGTISKRKEKH-----IYVANWFYIAFIVGIALLHIVNNLSIPTYLVA-DMGSVWKSISLYSGSNDAMIQ---WWYG 216 (485)
T ss_pred HHHHHHHHHCCCCC-----EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHH---HHHH
T ss_conf 99850342222462-----35505899999999999999967776578763-212001445202451235454---0256
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12579999879-99999998531056402668999999999999753322102247875889987653346788987799
Q gi|254780473|r 294 HPEVYILVLPA-FGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAK 372 (671)
Q Consensus 294 HPeVYIliLPa-~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvk 372 (671)
|..|-+.+... .|++|..+|+.|+||+||||..+..+.+..|+-.-...||+-.+-+|+++++.-++.+.+.-.||.-.
T Consensus 217 HNAVgF~lTaG~lG~~YYF~PK~a~rPvySYkLs~~~FWaLiF~YiWAGpHHL~YtalPDW~qtLg~VfS~iL~~PSWGg 296 (485)
T TIGR00780 217 HNAVGFFLTAGFLGMMYYFVPKQAERPVYSYKLSVVHFWALIFVYIWAGPHHLHYTALPDWVQTLGMVFSVILILPSWGG 296 (485)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 78999999755686654136644678733204779999999999974388411014654046777899999986166046
Q ss_pred HHHHHHHHCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99878742587--3022437999999999999887556530343211121274220447899999999999999999962
Q gi|254780473|r 373 IFNWLFTMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWF 450 (671)
Q Consensus 373 iFnwl~Tl~~G--~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~ 450 (671)
.-|-+.||.+. |+|-++-..+.+-..-.+....++|.|+|+.++|.+-|-|+|.|||.|--.+|.+-|..+|.+||..
T Consensus 297 ~INgl~TlsGaWdkLr~dPiikflvva~~FYg~sTfEGp~~sIK~VNalsHyTDW~igHVH~GaLGWvGf~~igs~Yym~ 376 (485)
T TIGR00780 297 MINGLMTLSGAWDKLRTDPIIKFLVVAVTFYGMSTFEGPMMSIKSVNALSHYTDWTIGHVHDGALGWVGFVTIGSLYYMV 376 (485)
T ss_pred HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 89888854045222142638999999977766765333458888875443302432433207731357999999999850
Q ss_pred HHHHCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HC-CCHHHCCCCCC---------HHHHHHHHHHHHHHHHHH
Q ss_conf 443076-7-47168999999999999999999999876-40-53030025870---------057999999999999999
Q gi|254780473|r 451 PKAFGY-Q-LNSFWGKVSFWCWFVGFYLAFMPLYALGL-KG-VTRRLSQYEDT---------TLQVYYVVALLGAVLIGI 517 (671)
Q Consensus 451 Pk~~Gr-~-l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl-~G-mpRR~~~y~~~---------~~~~~n~istiGa~l~~~ 517 (671)
|++||| + +|-||..+|||+..+|..+.+-.|.++|. +| |=|.++++-.- .--|+|.++.+|+.+...
T Consensus 377 PRLfgrE~~ySt~LV~~~FWiaTiG~VLY~asMWiaGi~qGlMWr~vd~~G~Lty~F~dtVk~~~PyyviR~~GGllYl~ 456 (485)
T TIGR00780 377 PRLFGREELYSTRLVDFHFWIATIGIVLYIASMWIAGIMQGLMWRDVDQDGNLTYQFIDTVKVLIPYYVIRGVGGLLYLI 456 (485)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 34145321010551237788999999999987578764057530102357853187799998755823567776899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999999744953568
Q gi|254780473|r 518 GVFSFVLSFIVSFLNRSKLQD 538 (671)
Q Consensus 518 g~l~f~~nl~~S~~~~~~~~~ 538 (671)
|.+++.||++.|+.++||.++
T Consensus 457 G~~I~aYN~~~T~~~gkk~~~ 477 (485)
T TIGR00780 457 GFIIMAYNIFATITAGKKLER 477 (485)
T ss_pred HHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999736862124
No 29
>COG3278 CcoN Cbb3-type cytochrome oxidase, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-40 Score=287.86 Aligned_cols=440 Identities=18% Similarity=0.250 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79999999999999999999999999985076756677668789899999999999999999999999999999864986
Q gi|254780473|r 65 KKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGAR 144 (671)
Q Consensus 65 K~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGar 144 (671)
.++-..+.+..++++++|...++++-.||+.|+.+... -+=-.|.++-+.|-..-||.+.--.+++-..|+++.-..+|
T Consensus 13 ~~vvr~f~~~tv~wgivgmlvGv~iA~qL~~P~ln~~~-~~w~~FGRlRplHtnaVifafgg~al~ats~yVvqRt~k~r 91 (482)
T COG3278 13 YKVVRQFLIATVVWGIVGMLVGVLIAAQLAWPDLNFDP-APWLSFGRLRPLHTNAVIFAFGGNALIATSYYVVQRTCKAR 91 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHCCCCCCCCCEECEEEEECCCCCHHEEEEEEEEEHHCCE
T ss_conf 58899999999999999999999999987265455674-30000242233300233233146302103303543001202
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40058899999999999999999999717677888313478655877885204588779999999998755689999997
Q gi|254780473|r 145 DVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIK 224 (671)
Q Consensus 145 dlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~ 224 (671)
+.---+..+.||.+....++...|++.|-.. +++|.. . -|-+++.+. |.-.+-+++|+.||.|
T Consensus 92 -L~~~~l~~f~fwgwq~~iV~a~~s~~~G~T~-----------skEyaE---~-eW~idi~~~-ivwv~y~i~f~gTi~~ 154 (482)
T COG3278 92 -LFGGNLAWFVFWGWQLFIVLAAISLPLGLTQ-----------SKEYAE---L-EWPIDILLT-IVWVAYGIVFFGTILK 154 (482)
T ss_pred -ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-----------CHHHCC---C-CCHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf -0267218999999999999998777304556-----------313303---5-643678999-9999999999999987
Q ss_pred HCCCCCCHHHCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 236898831331566689999----9999997333578889987776329801146543210132212333401257999
Q gi|254780473|r 225 MRCPGMTMMKMPVFVWTAFCS----NIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL 300 (671)
Q Consensus 225 ~RapGm~l~rmPlf~W~~l~t----sil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIl 300 (671)
+|.|-. -+-.|...+. +++-++. -+..--..++.+-+..-.|.+.-+-| |++||..|-+.
T Consensus 155 rk~~hi-----YVanWfy~afi~~iamLhivN--------n~~vPv~~~~~kSys~ysGv~DA~vQ---WWyGHnaVgFf 218 (482)
T COG3278 155 RKEPHI-----YVANWFYGAFIVTIAMLHIVN--------NLSVPVSFFGWKSYSAYSGVQDALVQ---WWYGHNAVGFF 218 (482)
T ss_pred HCCCEE-----EEEEHHHHHHHHHHHHHHHHH--------CCCCCEEEECCCCEEECCCHHHHHHH---HHHCCCEEEHH
T ss_conf 438728-----997088899999999999983--------34676587414311100456889999---87356500011
Q ss_pred HHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987-9999999985310564026689999999999997533221022478758899876533467889877999987874
Q gi|254780473|r 301 VLP-AFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFT 379 (671)
Q Consensus 301 iLP-a~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~T 379 (671)
..+ ..|++|..+|+.++||+||||..+..+.++.++-.-+..||+-.+.+|.+.++.-++.+++.-+||.-...|-+.|
T Consensus 219 lT~gfL~mmYYFvPKqa~rPiySYrLSivhFWaLif~YiwAGpHHLhytalPdW~qtLgmVfS~mL~~PswggmINglmT 298 (482)
T COG3278 219 LTAGFLGMMYYFVPKQAGRPIYSYRLSIVHFWALIFLYIWAGPHHLHYTALPDWAQTLGMVFSLMLLAPSWGGMINGLMT 298 (482)
T ss_pred HHHHHHHHHHHCCHHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35767777310360002995335542199999999997520665101467845999988999899875057655577743
Q ss_pred HCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 2587--3022437999999999999887556530343211121274220447899999999999999999962443076-
Q gi|254780473|r 380 MRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGY- 456 (671)
Q Consensus 380 l~~G--~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr- 456 (671)
|.+. |+|.++-..|.+-.+..+....+.|.++|+.++|-.-|-|.|.+||.|--..|.+.|..++.+||..||++||
T Consensus 299 lsGaw~klr~dPilrflv~a~~fYgmSTfEGpmmaIksVNaLsHyTdwtiGHVH~GalgwV~~it~gsiY~~vPrl~~r~ 378 (482)
T COG3278 299 LSGAWHKLRTDPILRFLVVALAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVGFITIGSIYHMVPRLFGRE 378 (482)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 20057666038169999999998725640462232000112220225520120243266788887877984228875866
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHCC------CC--C--CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7-4716899999999999999999999987-6405303002------58--7--00579999999999999999999999
Q gi|254780473|r 457 Q-LNSFWGKVSFWCWFVGFYLAFMPLYALG-LKGVTRRLSQ------YE--D--TTLQVYYVVALLGAVLIGIGVFSFVL 524 (671)
Q Consensus 457 ~-l~e~lgk~~Fwl~~iGf~l~F~pm~~lG-l~GmpRR~~~------y~--~--~~~~~~n~istiGa~l~~~g~l~f~~ 524 (671)
+ +|.+|-.+|||+..+|..+.+..|.++| .+|+--|.++ |+ | ..-.|+..++++|+.++..|.+++.+
T Consensus 379 ~mys~~Li~~hFWlatiGivlY~aaMwiaGi~QGLmwr~~~~~G~L~ysFiesv~a~~Pyy~iR~vGG~~~l~G~llmay 458 (482)
T COG3278 379 RMYSLRLVNAHFWLATIGIVLYIAAMWIAGITQGLMWRAYDEDGTLTYSFIESVVATHPYYVIRAVGGLLYLSGMLLMAY 458 (482)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 33534465788999987589999999998887500212105788278667888886250678887511999988899999
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 99999744953568
Q gi|254780473|r 525 SFIVSFLNRSKLQD 538 (671)
Q Consensus 525 nl~~S~~~~~~~~~ 538 (671)
|++.+++.++++++
T Consensus 459 n~~~Ti~~~~~~~~ 472 (482)
T COG3278 459 NIWMTIRGGKPLEA 472 (482)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 98885206775545
No 30
>KOG4769 consensus
Probab=100.00 E-value=4.2e-45 Score=324.72 Aligned_cols=181 Identities=39% Similarity=0.641 Sum_probs=175.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999999999-99999999864986400588999999999999999999997176778883134786558778852045
Q gi|254780473|r 120 MIFFVAMPMIT-GIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVD 198 (671)
Q Consensus 120 Mif~~a~p~~~-G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d 198 (671)
|+||++||.++ ||+||++|+++||.|+||||+|+.|||+.+.+.+++..|-.+..++++|||.|||||+.+.++|.++|
T Consensus 1 miff~vmp~~iggfgn~lvplm~ga~D~afPr~nn~sfw~lp~~L~~L~~s~~ve~g~gT~WtvyPpls~~~sH~Gasvd 80 (182)
T KOG4769 1 MIFFLTMPENIGGFGNPLVPLIPCAGDGAFPRLNNDSFWDLPSALIALGDSACVEAGAGTRWTVYPPLAGNPSHAGASVD 80 (182)
T ss_pred CEEEEEEHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHH
T ss_conf 96899877671886883132467688778765356713206568887247788742589865588875678688861289
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC
Q ss_conf 88779999999998755689999997236898831331566689999999999733357888998777632980114654
Q gi|254780473|r 199 YYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHL 278 (671)
Q Consensus 199 ~~i~gl~l~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~ 278 (671)
.-+.++++.|++++++++||++|.++||++||++.|+|+|+|+.+.|+.++++++|++++ ++|++.|||+
T Consensus 81 laIfslhl~g~ss~LGain~i~ttinmRt~~~~~~~~~lfvws~~iT~~llllslPvl~~-Itml~~drN~--------- 150 (182)
T KOG4769 81 LAIFSLHLAGKSSCLGAVNLIGTTINMRTREKLQVRVTLFVWSKSKTCKLLLLTLPVLLD-ITMLFQDRNS--------- 150 (182)
T ss_pred HHHHHHHHCCCHHHHHHHHEEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCC---------
T ss_conf 999998752504332020124688732576631454217899999999999973488761-5886222684---------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 3210132212333401257999987999999998531056402668999
Q gi|254780473|r 279 GGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMV 327 (671)
Q Consensus 279 GGdplL~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v 327 (671)
||||+|||+||++|++++.+++|+.|||..|+
T Consensus 151 -----------------eVYILIlPgFgiiShiv~~~skKe~fg~~gmv 182 (182)
T KOG4769 151 -----------------EVYILILPGFGIISHIVTYYSKKEPFGYMGMV 182 (182)
T ss_pred -----------------EEEEEEECCCCCEEEEEEHHCCCCCCCCCCCC
T ss_conf -----------------59999803665112244211057765401349
No 31
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.9e-10 Score=88.65 Aligned_cols=438 Identities=15% Similarity=0.173 Sum_probs=270.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47999999999999999999999999998507675----66776687898999999999999999999999999999998
Q gi|254780473|r 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASG----GGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPL 139 (671)
Q Consensus 64 HK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~----~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl 139 (671)
..|++..|...++.-+.+-+.++.+.-.+-..|++ ....+++ ||-.-|.|--..++..++-. .+++.|+.|.
T Consensus 249 sQkva~lyf~~A~~Lf~vQiLlG~~~~hyyVege~fyGI~l~~~LP---fni~R~~H~nlavvWIa~~w-laa~lyllP~ 324 (717)
T COG3256 249 SQKVALLYFFLAVALFVVQILLGGLTAHYYVEGEGFYGIPLAQVLP---FNITRTVHTNLAVVWIATGW-LAAGLYLLPE 324 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHCC---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 8998888999999999999998877325686366545762566313---79999999858999999999-9888875065
Q ss_pred HCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6498--64005889999999999999999999971767788831347865587788520458877999999999875568
Q gi|254780473|r 140 QIGA--RDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGIN 217 (671)
Q Consensus 140 ~iGa--rdlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iN 217 (671)
.-+- ...--|++....||..+.+.+....+...--.+ .-|+- -+++..|..+... ++-+.++.+.....+.-
T Consensus 325 ~~~pk~~~l~s~~L~~al~~v~~gs~~g~~~gyl~~l~~-~~~F~----~G~QG~~~~~~g~-lwqlll~~~ll~~v~Lm 398 (717)
T COG3256 325 LGGPKFQELGSPKLLIALFFVVVGSLAGAWLGYLQLLPA-PFWFW----FGHQGYEYLGRGR-LWQLLLIKGLLVWVALM 398 (717)
T ss_pred HCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEE----ECCCCCCCCCCHH-HHHHHHHHHHHHHHHHH
T ss_conf 068236553368999999999999999999998852687-31100----1556873356007-99999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999972368988313315666899999999997333578889987776329801146543210132212333401257
Q gi|254780473|r 218 LVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEV 297 (671)
Q Consensus 218 fi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeV 297 (671)
|-.++-..+.||.+..+.-++ .+.....++.++ ..++.++-- |--+-|---|+-=|--|
T Consensus 399 fra~~t~~~~~grkt~~i~~~-------------~~~~~gig~Ff~-------~~~~~~~~~-n~t~dey~rWwvVHlwV 457 (717)
T COG3256 399 FRANVTATKLKGRKTTLIAIL-------------LLSLTGIGLFFL-------FGLYNPEWT-NLAVDEYWRWWVVHLWV 457 (717)
T ss_pred HHHCCHHHHCCCCCHHHHHHH-------------HHHHHHHHHHHH-------HHHCCCCCC-CCHHHHHHHHHHHHHHH
T ss_conf 996031542478642499999-------------999999999983-------010368888-72099999999999998
Q ss_pred H-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9998799999999853105640266899999999999975332-2102247875889987653346788987799998
Q gi|254780473|r 298 Y-ILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVW-LHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFN 375 (671)
Q Consensus 298 Y-IliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW-~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFn 375 (671)
= ++-+-+..++.-+.-+...-|--.-....+...++.++|-... .||.|=.|.|..+...=+..+.+-.+|-...++-
T Consensus 458 EGfwe~i~~~ilafLlv~lg~V~rs~a~~a~~v~~~l~l~sGiiGT~HHyYf~G~P~~wm~iGAvfSaLEVvPl~~l~~~ 537 (717)
T COG3256 458 EGFWEVIATAILAFLLVKLGGVDRSVAEKALYVIAALALFSGIIGTLHHYYFIGTPGYWMWIGAVFSALEVVPLFLLGLE 537 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66699999999999999927969899999999999999974765753114666881699999999988666699999999
Q ss_pred HHHHHCCC--CCEEC-HHHHHHHH--HHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78742587--30224-37999999--999999887556530343211121274220447899999999999999999962
Q gi|254780473|r 376 WLFTMRLG--KVRFE-VPMMWTLG--FMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWF 450 (671)
Q Consensus 376 wl~Tl~~G--~ir~~-~pml~~lg--fi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~ 450 (671)
-.-++.|+ |-..+ +.+.|.++ ...-|+-.|+=|-+.-.+..|++.|+|..-.+|-|..+.|.=.+-.++-+.|-+
T Consensus 538 af~~~~r~~~~~~~~r~~~~~~~~~Av~~wfvGAgv~Gflin~pivnYY~hG~q~TaaHaHlAffgvYgml~i~mm~~Al 617 (717)
T COG3256 538 AFELWKRGEGRDWPNRARLPWSCFVAVGAWFVGAGVFGFLINPPIVNYYTHGLQTTAAHAHLAFFGVYGMLALAMMLYAL 617 (717)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999765046414568899999999999987655552114650677753020001677888887899999999999999
Q ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC-C-CHHHCC-CC-C------CHHHHHHHHHHHHHHHHHHH
Q ss_conf 44307674-71689999999999999999-9999987640-5-303002-58-7------00579999999999999999
Q gi|254780473|r 451 PKAFGYQL-NSFWGKVSFWCWFVGFYLAF-MPLYALGLKG-V-TRRLSQ-YE-D------TTLQVYYVVALLGAVLIGIG 518 (671)
Q Consensus 451 Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F-~pm~~lGl~G-m-pRR~~~-y~-~------~~~~~~n~istiGa~l~~~g 518 (671)
|.+.++.. ++|+.++.||+..+|+.+.- +.+..+|... + .|+.-. |. . +..+.+-.++..|.++.++|
T Consensus 618 ~~l~~~~~~~~kl~~~afw~m~~glv~m~~~sL~~aGv~Q~~~s~~~G~W~Ars~~~~~q~~l~~~vWLR~~gdvVf~ig 697 (717)
T COG3256 618 RELRPIGEAPDKLLRWAFWLMNGGLVLMTAISLLPAGVVQAWLSITHGYWYARSPEFAVQDQLALFVWLRIGGDVVFAIG 697 (717)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEECCCEEEEHH
T ss_conf 85365432337788899999987899999999978789999988631045424878875786555047872487888767
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999744
Q gi|254780473|r 519 VFSFVLSFIVSFLN 532 (671)
Q Consensus 519 ~l~f~~nl~~S~~~ 532 (671)
..++++...+-.++
T Consensus 698 A~~~li~~lr~~~~ 711 (717)
T COG3256 698 AIVFLIYVLRGGKG 711 (717)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 89999999701024
No 32
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=98.87 E-value=1e-05 Score=56.52 Aligned_cols=231 Identities=14% Similarity=0.133 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 1322123334012579999879-9999999853105640266899999999------99997533221022478758899
Q gi|254780473|r 283 MMYINLIWIWGHPEVYILVLPA-FGIFSEVVATFSGKRLFGYNSMVYATLA------ITILSYTVWLHHFFTMGSGANVN 355 (671)
Q Consensus 283 lL~q~LFW~fGHPeVYIliLPa-~Gi~seiip~fs~kplfgy~~~v~A~~~------i~~lsf~VW~HHmFt~G~~~~~~ 355 (671)
+-|-+|+=..+.--+|-+..|+ +|.-+.++|+.+|.|+.+.|....+... ++..|+.... ++|.. ..
T Consensus 84 ltfgrlr~~Htn~~ifgw~~~a~~g~a~ylvPr~~~t~l~~~~L~~~~fw~~~~g~~l~~~~~~~G~----t~g~E--y~ 157 (493)
T cd01661 84 LSFGRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRARLAGGNLAWFVFWGYNLFIVLAATGYLLGI----TQGKE--YA 157 (493)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCC--HH
T ss_conf 1532126878899999999999999999999999598268752899999999999999999997358----79965--20
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-ECHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCEEEC------CCE
Q ss_conf 8765334678898779999878742587302-2437999999999999----8875565303432111212------742
Q gi|254780473|r 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLGKVR-FEVPMMWTLGFMITFL----IGGMTGVLLAVPPADFTLH------NSL 424 (671)
Q Consensus 356 ~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir-~~~pml~~lgfi~~F~----iGG~tGv~lA~~~~D~~lH------nT~ 424 (671)
..=-.....+.+-...-..|-+.|+.+.|.+ ......+.+++++.+. .+-+..+......-.+..| ...
T Consensus 158 E~pw~idi~i~v~~~~~~~~~~~Ti~~rr~~~iyvs~W~~la~li~~~~l~~~~~l~~~~~~~~~~~~~~~~Gv~~a~~~ 237 (493)
T cd01661 158 EPEWYVDLWLTVVWVAYLLPFLGTLLRRKEPHIYVANWYYLAFIVTVAVLHIVNNLAVPVSWFGSKSYSAHAGVQDATTQ 237 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 25299999999999999999999999716996033699999999999999999887887887312313535342766888
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHCCCCCCHHH
Q ss_conf 2044789999999999999999996244307674-71689999999999-999999999998764053030025870057
Q gi|254780473|r 425 FLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFV-GFYLAFMPLYALGLKGVTRRLSQYEDTTLQ 502 (671)
Q Consensus 425 fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~i-Gf~l~F~pm~~lGl~GmpRR~~~y~~~~~~ 502 (671)
|=-+ |+.+..-.....+|.+||-.||..||.. +.++...+||.... +...- +.|.. .-+-|+|
T Consensus 238 Wwfg--H~~V~~~ltp~~lgi~yy~lPk~~~rPi~sy~l~vi~fwal~~~~~~~g--~HH~~----------~~~~P~w- 302 (493)
T cd01661 238 WWYG--HNAVGFFLTAGFLAMMYYFLPKIAERPVYSYRLSIIGFWALAFLYIWAG--PHHLH----------YTALPDW- 302 (493)
T ss_pred HHHH--CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHH--HHHHH----------CCCCHHH-
T ss_conf 7651--4289999999999999999999819862543299999999999999875--62730----------5780789-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999999999999744953
Q gi|254780473|r 503 VYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535 (671)
Q Consensus 503 ~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~ 535 (671)
+..+.++.+.++.+-....+.|...|++.+.+
T Consensus 303 -~~~~~~v~S~l~~vP~~~~~~N~~~Tl~g~w~ 334 (493)
T cd01661 303 -LQTLGMVFSVMLWMPSWAGMINGLLTLRGAWD 334 (493)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -99999999999999899999999999984212
No 33
>cd01660 ba3-like_Oxidase_I ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.
Probab=97.97 E-value=0.00058 Score=44.62 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=62.6
Q ss_pred ECCCEEHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC
Q ss_conf 127422044789-999999999999999996244307674-716899999999999999999999987640530300258
Q gi|254780473|r 420 LHNSLFLVAHFH-NTIIGGVVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE 497 (671)
Q Consensus 420 lHnT~fVVAHFH-yvl~gg~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~ 497 (671)
..+-.|--||=. |.+ ....++.+|+..||..||++ ++|+...++|...+-.... .+.|. ++.+
T Consensus 204 ~qhLFWffGHpeVyi~----ilPa~g~~~~iip~~~~kpif~~~~~~~a~~~i~~l~~~v-w~HHm----------f~~~ 268 (473)
T cd01660 204 SRTLFWWFGHPLVYFW----LLPAYIAWYTILPKIAGGKLFSDPLARLAFILFLLFSTPV-GFHHQ----------FADP 268 (473)
T ss_pred HHHHHHHHCCHHHHHH----HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHH----------CCCC
T ss_conf 9999999254689999----9999999999998733887310079999999999999996-13353----------1577
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 700579999999999999999999999999997449535
Q gi|254780473|r 498 DTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKL 536 (671)
Q Consensus 498 ~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~ 536 (671)
+. -...+...++...++++-..+-+.|...|+.++.+.
T Consensus 269 g~-~~~~~~~~~~~T~~iavPt~v~vf~~~~Tl~~~~~~ 306 (473)
T cd01660 269 GI-GPGWKFIHMVLTFMVALPSLLTAFTVFASLEIAGRL 306 (473)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 86-689999999999999998769999999998751123
No 34
>pfam00115 COX1 Cytochrome C and Quinol oxidase polypeptide I.
Probab=97.86 E-value=0.0025 Score=40.34 Aligned_cols=236 Identities=16% Similarity=0.240 Sum_probs=122.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHH------HHHHHHH---HHCCCC
Q ss_conf 21013221233340125799998799-99999985310564-0266899999999999------9753322---102247
Q gi|254780473|r 280 GNPMMYINLIWIWGHPEVYILVLPAF-GIFSEVVATFSGKR-LFGYNSMVYATLAITI------LSYTVWL---HHFFTM 348 (671)
Q Consensus 280 GdplL~q~LFW~fGHPeVYIliLPa~-Gi~seiip~fs~kp-lfgy~~~v~A~~~i~~------lsf~VW~---HHmFt~ 348 (671)
+|+..|-.+.=.-|---++....|+. |..+.++|..+|+| +.+.|....+.....+ .|+.... .--+|.
T Consensus 37 ~~~~~y~~~~t~Hg~~mif~~~~~~~~g~~~ylvp~~~g~~dl~~prl~~~~fwl~~~g~~l~~~s~~~g~~~~~~~wt~ 116 (444)
T pfam00115 37 SPDATYNQLRTLHGNLMIFWWAMPALIGLGNYLVPLMLGARDLAFPRLNALSFWLLVVGGLLALVSLLLGGGAPGRGWTE 116 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 88667898999999999999999999999999999990997444568999999999999999999873077888888010
Q ss_pred CCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE---EC-HHH-HHHH---HHHHHHHHHHHHHHHCCCC
Q ss_conf 875889------98765334678898779999878742587302---24-379-9999---9999999887556530343
Q gi|254780473|r 349 GSGANV------NAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVR---FE-VPM-MWTL---GFMITFLIGGMTGVLLAVP 414 (671)
Q Consensus 349 G~~~~~------~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir---~~-~pm-l~~l---gfi~~F~iGG~tGv~lA~~ 414 (671)
.+|.. ...+-..-.+..+-+-+..+|.+.|..+.|.+ .+ .|. .|.+ +.+..+.....++...-.
T Consensus 117 -ypPLs~~~~~~~~~~~~~l~l~~v~~ll~~in~i~Ti~~~r~~g~~~~~~pl~~w~~~~t~il~~~~~p~l~~~~~~~- 194 (444)
T pfam00115 117 -YPPLSSTSSSPVDLWILGLLLVGIGSLLGAINFIVTILKRRAPGMTLSRMPLFVWSLLATAILILFAFPVLAVALLML- 194 (444)
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf -677433556662899999999999999999999999997176788732333999999999999999988778888888-
Q ss_pred CCCEEE------------CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 211121------------27422044789999999999999999996244307674-71689999999999999999999
Q gi|254780473|r 415 PADFTL------------HNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPL 481 (671)
Q Consensus 415 ~~D~~l------------HnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm 481 (671)
..|... .+=.|-.+|=. + ...+...++..||-.||.+||++ ++|+.+++||+..+--... ...
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~lfW~fgHp~--V-y~~~~pa~g~~y~iip~~~~~~~~s~~~~~~a~~~i~~~~~~v-~~H 270 (444)
T pfam00115 195 LLDRNFGTSFFGGDPLLYQHLFWFFGHPE--V-YILILPAFGIVSYILPKFSGKPLFGYKWMVLAFWAIALLSFLV-WGH 270 (444)
T ss_pred HHHHHCCCCEECCCCHHHHHHHHHHCCCH--H-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CHH
T ss_conf 76521460114787099999999844871--4-7789989999999988851787403889999999999985001-120
Q ss_pred HHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9987640530300258700579999999999999999999999999997449
Q gi|254780473|r 482 YALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 (671)
Q Consensus 482 ~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~ 533 (671)
|..- .|+| ..+....++-..++.+-....+.|...+++++
T Consensus 271 Hl~~-~g~p-----------~~~~~~~~~~t~~i~iP~~~~~~~~~~t~~~~ 310 (444)
T pfam00115 271 HMFT-SGLP-----------PWWRAFFSVFSMLIAIPTGLKVFNWLATLWGG 310 (444)
T ss_pred HEEC-CCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1015-7897-----------89999999999999988999999999886157
No 35
>cd00919 Heme_Cu_Oxidase_I Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from
Probab=97.82 E-value=0.0014 Score=42.06 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=65.3
Q ss_pred ECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
Q ss_conf 127422044789999999999999999996244307674-7168999999999999999999999876405303002587
Q gi|254780473|r 420 LHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYED 498 (671)
Q Consensus 420 lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~ 498 (671)
..+-.|-=||=.-. -.+...++..|+-.|+..||++ ++|+.++++|...+--.... +.|.. ..|+|
T Consensus 219 ~~~LfW~fGHp~Vy---i~ilPa~g~~~~iip~~~~rpl~s~~~~~~a~~~i~~~~~~vw-~HHmf-~~g~~-------- 285 (463)
T cd00919 219 YQHLFWFFGHPEVY---ILILPAFGAISEIIPTFSGKPLFGYKLMVYAFLAIGFLSFLVW-AHHMF-TVGLP-------- 285 (463)
T ss_pred HHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCEE-CCCCC--------
T ss_conf 55434650787122---1396677568764498608984107999999999999997762-13322-67885--------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0057999999999999999999999999999744953
Q gi|254780473|r 499 TTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535 (671)
Q Consensus 499 ~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~ 535 (671)
...+...++...++.+-...-+.|...++++++.
T Consensus 286 ---~~~~~~~~~~T~~i~iPs~~~~f~~~~Tl~~~~~ 319 (463)
T cd00919 286 ---VDTRAYFTAATMIIAVPTGIKVFNWLATLWGGRI 319 (463)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ---8999999999999987689999999987614760
No 36
>cd01662 Ubiquinol_Oxidase_I Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges co
Probab=97.73 E-value=0.0039 Score=39.03 Aligned_cols=84 Identities=6% Similarity=-0.040 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999996244307674-7168999999999999999999999876405303002587005799999999999999
Q gi|254780473|r 438 VVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIG 516 (671)
Q Consensus 438 ~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~ 516 (671)
.+...++.+|+-.|+..||++ +++..+.+++...+-.... .+.|.. ..|+|. ..+ ..-++-..+++
T Consensus 240 ~ilPa~G~i~~iip~~s~kplfs~~~~i~a~~~i~~l~~~V-w~HHmf-~~g~~~--------~~~---~~f~~~T~~Ia 306 (501)
T cd01662 240 LILPAFGIFSEIVPTFSRKPLFGYRSMVYATVAIGFLSFGV-WVHHMF-TTGAGA--------LVN---AFFSIATMIIA 306 (501)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHEE-CCCCCH--------HHH---HHHHHHHHHHH
T ss_conf 99889999999988750232788899999999999997152-342312-278758--------999---99999999999
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999974495
Q gi|254780473|r 517 IGVFSFVLSFIVSFLNRS 534 (671)
Q Consensus 517 ~g~l~f~~nl~~S~~~~~ 534 (671)
+-...-+.|...|+.+++
T Consensus 307 vPtgikvfnwl~Tl~~g~ 324 (501)
T cd01662 307 VPTGVKIFNWLFTMWRGR 324 (501)
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 988999999999807998
No 37
>pfam12270 Cyt_c_ox_IV Cytochrome c oxidase subunit IV. This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex.
Probab=97.59 E-value=0.0006 Score=44.56 Aligned_cols=54 Identities=17% Similarity=0.344 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 1899885899999999999999999999999999999999999998314898455
Q gi|254780473|r 593 HMPSNTATGIILAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEV 647 (671)
Q Consensus 593 hmP~~t~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (671)
+-+-.|+||+.+++...+.+.|++.. ||+..+|....+.+.+.|.+|+.++.+.
T Consensus 81 FFSP~SwWPl~~a~~~a~~~lGla~g-~WL~~ig~~~~~~~~~G~vfEY~rg~~a 134 (135)
T pfam12270 81 FFSPWSWWPLALALSVAIAALGLAFG-WWLVAIGAVLLIIALVGLVFEYYRGPEA 134 (135)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 53873088999999999999999999-9999999999999999885030467668
No 38
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=96.32 E-value=0.078 Score=30.17 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=26.6
Q ss_pred HHHHHH-HHHHHHHHHCCCCCCHHHCCHHH-HHHHHHHHHHHHHH
Q ss_conf 987556-89999997236898831331566-68999999999973
Q gi|254780473|r 211 TTLSGI-NLVVTIIKMRCPGMTMMKMPVFV-WTAFCSNIMIIAAF 253 (671)
Q Consensus 211 sll~~i-Nfi~TI~~~RapGm~l~rmPlf~-W~~l~tsil~i~a~ 253 (671)
.+.++. |+++-. ...++.|..-|+..+. |..+...+++..++
T Consensus 64 ~l~ggfgNylvPl-~iGarDmAFPRlN~lsfWl~~~g~~ll~~s~ 107 (488)
T cd01663 64 ALIGGFGNWLVPL-MIGAPDMAFPRLNNLSFWLLPPSLLLLLLSA 107 (488)
T ss_pred HHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999-7699620126588889999778889877555
No 39
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I; InterPro: IPR014241 This entry represents the bacterial-type cytochrome c oxidase subunit I (CtaD, CoxA, CaaA). Cytochrome c oxidase is the component of the respiratory chain that catalyses the reduction of oxygen to water. Subunits I, II and III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A centre of subunit II and heme a of subunit I to the bimetallic centre formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer activity. In the bacilli an apparent split (paralogism) has created a sister clade (IPR014233 from INTERPRO) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c..
Probab=95.96 E-value=0.12 Score=29.02 Aligned_cols=239 Identities=16% Similarity=0.250 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHCC---CCCCCC
Q ss_conf 8789899999999999999999999999999999864986400588999999999999-999999997176---778883
Q gi|254780473|r 105 DAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAG-AVVIMCSLFIGE---FASVGW 180 (671)
Q Consensus 105 ~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGardlaFPrlna~sfWl~~~g-~~l~~~S~~~g~---~~~~GW 180 (671)
||-.|..+|=.=|==-+..++.| ..|+..-++|.- || =+-++|-..+.+ ...-.+|+.+-. + .+|
T Consensus 231 DP~LwQHLFWFFGHPEVYI~~LP-a~Gi~S~i~ptF--aR------kp~FGY~~~V~a~~aIg~lsf~VWaHHMF-t~G- 299 (524)
T TIGR02891 231 DPLLWQHLFWFFGHPEVYIIVLP-AFGIISEIIPTF--AR------KPIFGYRAMVYATVAIGFLSFGVWAHHMF-TTG- 299 (524)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHH--CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHCE-ECC-
T ss_conf 63578776444027067899836-999999996875--38------98632899999999999998664223301-126-
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13478655877885204588779999999998755689999997236898831331566689999999999733357888
Q gi|254780473|r 181 LAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATL 260 (671)
Q Consensus 181 t~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al 260 (671)
-| ..+.-++-..-.++.|=|=+-=-|.++|+.|-| -..|.|+ ..+-..+..+..-.||+-.
T Consensus 300 --~~---------~~~~~~Fs~~t~~iAvPTgvKvFnWiaTlw~G~----i~f~~PM----Lf~lGFi~~F~iGGLTGvm 360 (524)
T TIGR02891 300 --IP---------PLALAFFSAATMLIAVPTGVKVFNWIATLWGGS----IRFKTPM----LFALGFIFLFVIGGLTGVM 360 (524)
T ss_pred --CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEHHHH----HHHHHHHHHHHHHHHHHHH
T ss_conf --44---------258999999999999854799999999987685----1231578----9999999999987889999
Q ss_pred -HHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -9987776329801146543210132212333401257999987999999998531056402668999999999999753
Q gi|254780473|r 261 -FLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYT 339 (671)
Q Consensus 261 -~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~ 339 (671)
+..-+|..+.-.+|..+. +=... +=-.+.|.+|-+|+=.|+.+||.+ +++.-+++...+-+ ||.
T Consensus 361 lA~~p~D~~~HDTYFVVAH---------FHYVl----~Gg~vF~~~aa~YYWfPk~TGRm~-~erlG~~hFwl~f~-GfN 425 (524)
T TIGR02891 361 LASVPLDWQLHDTYFVVAH---------FHYVL----VGGSVFALFAAIYYWFPKVTGRMY-NERLGRWHFWLTFV-GFN 425 (524)
T ss_pred HHHHHCCCCCCCCEEEHHH---------HHHHH----HHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH-HHH
T ss_conf 9877605333575000357---------99999----999999999999987222025767-34478899999999-999
Q ss_pred H-H-HHHC------------C----CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 3-2-2102------------2----478758-899876533467889877999987874258730224
Q gi|254780473|r 340 V-W-LHHF------------F----TMGSGA-NVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFE 388 (671)
Q Consensus 340 V-W-~HHm------------F----t~G~~~-~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~ 388 (671)
+ . .-|. | ....+- ..|.+-++-..+.++-..+-++|-..++.+|+..-+
T Consensus 426 ~tFfPmh~lGl~GMPRR~~tYe~f~~~~~Gf~~lN~~St~Gaf~la~g~L~f~~~~~~~~~~G~~a~~ 493 (524)
T TIGR02891 426 LTFFPMHLLGLLGMPRRYYTYEYFIPPQMGFATLNLISTIGAFILAAGVLLFLVNVIWSLRKGPKAGA 493 (524)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999852789863430540067557721777999999999999999999999999615887898
No 40
>MTH00037 COX1 cytochrome c oxidase subunit I; Provisional
Probab=95.59 E-value=0.16 Score=28.03 Aligned_cols=254 Identities=17% Similarity=0.243 Sum_probs=107.8
Q ss_pred HHHHHHHH-HHHHHHHHHCCCCCCHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHH-H
Q ss_conf 99987556-899999972368988313315666899999-99999733357888998777632980114654321013-2
Q gi|254780473|r 209 IGTTLSGI-NLVVTIIKMRCPGMTMMKMPVFVWTAFCSN-IMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMM-Y 285 (671)
Q Consensus 209 igsll~~i-Nfi~TI~~~RapGm~l~rmPlf~W~~l~ts-il~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL-~ 285 (671)
.-.+.++. |+++-+. ..||.|..-|+..+.+-.+..+ ++++.++..-.+ ..-|..+|.|-.+...-- .
T Consensus 71 mP~~~ggfgNyliPlm-iGa~DmaFPRLN~~SfWl~~~~~~l~~~s~~~~~g--------~~~GWT~YpPLS~~~~~~g~ 141 (517)
T MTH00037 71 MPIMIGGFGNWLIPLM-IGAPDMAFPRMNNMSFWLIPPSFLLLLASAGVESG--------AGTGWTIYPPLSSGLAHAGG 141 (517)
T ss_pred HHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCCCCCCCCCCCCCCCCCCH
T ss_conf 9999999899999997-49974142608999999999999999999734688--------89987110785456779960
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH------HHCCCCCHHHHHHHHHHHHHHHHHHHHH-------------HHHC
Q ss_conf 21233340125799-99879999999985------3105640266899999999999975332-------------2102
Q gi|254780473|r 286 INLIWIWGHPEVYI-LVLPAFGIFSEVVA------TFSGKRLFGYNSMVYATLAITILSYTVW-------------LHHF 345 (671)
Q Consensus 286 q~LFW~fGHPeVYI-liLPa~Gi~seiip------~fs~kplfgy~~~v~A~~~i~~lsf~VW-------------~HHm 345 (671)
.--+|.++--.+-+ -++-+.-.+..++. +..|-|+|.....+-+. +.++++.|= .-|+
T Consensus 142 ~vd~~i~~l~l~gisSil~siNfi~Ti~~mR~pGm~~~~mPlf~Ws~l~ts~--lllla~PvL~~a~~mll~DR~~~t~F 219 (517)
T MTH00037 142 SVDLAIFSLHLAGASSILASINFITTIINMRTPGMSFDRLPLFVWSVFVTAF--LLLLSLPVLAGAITMLLTDRNINTTF 219 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8999999999999999986899999899856899983104599999999999--99976449999999987211038856
Q ss_pred CCC---CCCHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHCCCCCEEC-HHHHHHHHHHHH--HHHHHHHHHHCCCCC
Q ss_conf 247---875889987---65-33467889877999987874258730224-379999999999--998875565303432
Q gi|254780473|r 346 FTM---GSGANVNAF---FG-IMTMVIAVPTGAKIFNWLFTMRLGKVRFE-VPMMWTLGFMIT--FLIGGMTGVLLAVPP 415 (671)
Q Consensus 346 Ft~---G~~~~~~~~---F~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~-~pml~~lgfi~~--F~iGG~tGv~lA~~~ 415 (671)
|.. |.+...+.. |+ -.-.++-+|.---+-.-+.|.-+.|+.|. ..|.++...|.. |.+-+ --... .+
T Consensus 220 F~~~~GGdpiL~QhLFWffGHPEVYIliLPafGiiSeii~~fs~rk~iFGy~~mv~A~~~I~~lgf~VW~-HHMFt--~G 296 (517)
T MTH00037 220 FDPAGGGDPILFQHLFWFFGHPEVYILILPGFGMISHVIAHYSGKSEPFGYLGMVYAMIAIGILGFLVWA-HHMFT--VG 296 (517)
T ss_pred CCCCCCCCHHHHHCHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCC--CC
T ss_conf 6767787633552213315986244110403688877651024886431209999999999987777644-43020--47
Q ss_pred CCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 111212742204478999999999999999999624430767471689999999999999999999998764053
Q gi|254780473|r 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVT 490 (671)
Q Consensus 416 ~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~Gmp 490 (671)
.|. .-+.+|-.+ ...-++-.-. -+.-|.--+.|.++.-+ .--++.+||...|. +-|+.|..
T Consensus 297 ~~~-~~~~~F~~~-----Tm~IavPTgi-kvF~WiaTl~~g~i~~~----~pml~~lgFi~~F~---iGGlTGv~ 357 (517)
T MTH00037 297 MDV-DTRAYFTAA-----TMIIAVPTGI-KVFSWMATLQGSNLRWD----TPLLWALGFVFLFT---LGGLTGVV 357 (517)
T ss_pred CCC-HHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHH---HHCCCEEE
T ss_conf 782-367799999-----9998743589-99999999858988898----88999999999997---20421122
No 41
>MTH00052 COX3 cytochrome c oxidase subunit III; Provisional
Probab=94.92 E-value=0.15 Score=28.25 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=22.7
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 533221022478758899876533467889877999987
Q gi|254780473|r 338 YTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 338 f~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
...|+||-...|.....+....++..+-.+-++.++..+
T Consensus 144 t~t~Ah~al~~~~~~~~~~~l~~Ti~LG~~F~~~Q~~EY 182 (262)
T MTH00052 144 TVTWAHHGIISGKRKEAIRGLALTVALGLLFTGLQAMEY 182 (262)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 169999999966788899999999999999999999999
No 42
>MTH00048 COX1 cytochrome c oxidase subunit I; Provisional
Probab=94.79 E-value=0.27 Score=26.46 Aligned_cols=249 Identities=13% Similarity=0.233 Sum_probs=102.3
Q ss_pred HHHHHH-HHHHHHHHHCCCCCCHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC--CHHHHH
Q ss_conf 987556-89999997236898831331566-68999999999973335788899877763298011465432--101322
Q gi|254780473|r 211 TTLSGI-NLVVTIIKMRCPGMTMMKMPVFV-WTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGG--NPMMYI 286 (671)
Q Consensus 211 sll~~i-Nfi~TI~~~RapGm~l~rmPlf~-W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GG--dplL~q 286 (671)
.+.++. |++.-+. .-|+.|..-|+.-.. |-.+...++++.++-. + -.-|..+|.|-.+- ++-.-.
T Consensus 74 ~l~ggfgNyliPlm-iGa~DmaFPRLNa~SfWl~~~~~~~~~~s~~~--g--------~~~GWT~YpPLS~~~~~~g~g~ 142 (514)
T MTH00048 74 VLIGGFGNYLLPLL-LGLSDLNLPRLNALSAWLLVPSIVFLLLSMCL--G--------AGVGWTFYPPLSSSYFSSSVGV 142 (514)
T ss_pred HHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC--C--------CCCCCEEECCCCCCCCCCCCCH
T ss_conf 99999899999996-59975300547887899899999999998621--7--------8888516168120257898317
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHCCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHCCC
Q ss_conf 1233340125799-99879999999985-----310564026689999999999997533-------------2210224
Q gi|254780473|r 287 NLIWIWGHPEVYI-LVLPAFGIFSEVVA-----TFSGKRLFGYNSMVYATLAITILSYTV-------------WLHHFFT 347 (671)
Q Consensus 287 ~LFW~fGHPeVYI-liLPa~Gi~seiip-----~fs~kplfgy~~~v~A~~~i~~lsf~V-------------W~HHmFt 347 (671)
-+|.+|=-..-+ -++-+.-.+..+.. +..|-|+|.....+-+ .+.++++.| +.-|+|.
T Consensus 143 -d~~i~~l~l~giSSilgsiNfi~Ti~~r~~~~~~~rmPlf~Ws~l~Ts--~Lll~a~PvL~~a~~mll~DR~~gt~FF~ 219 (514)
T MTH00048 143 -DFLMFSLHLAGVSSLFGSINFICTLYSAFMTNVFSRTSIILWAYLFTS--ILLLLSLPVLAAAITMLLFDRNFGSAFFD 219 (514)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf -999999999999899989999999998079985011539999999999--99998425999999998814455776778
Q ss_pred C---CCCHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHCCCCCEE-CHHHHHHHHHHHHHHHHHHHHHHCCC----CC
Q ss_conf 7---8758899876---5-3346788987799998787425873022-43799999999999988755653034----32
Q gi|254780473|r 348 M---GSGANVNAFF---G-IMTMVIAVPTGAKIFNWLFTMRLGKVRF-EVPMMWTLGFMITFLIGGMTGVLLAV----PP 415 (671)
Q Consensus 348 ~---G~~~~~~~~F---~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~-~~pml~~lgfi~~F~iGG~tGv~lA~----~~ 415 (671)
. |.+...|..| + -.-.++.+|.---+-.-+.+..++|.-| ...|.++...|. -+.-+.-+. ..
T Consensus 220 p~~GGdp~L~QHLFWffGHPEVYIliLPafGiiSeii~~~s~k~~iFGy~~mv~a~~~I~-----~lgf~VW~HHMFt~G 294 (514)
T MTH00048 220 PLGGGDPVLFQHMFWFFGHPEVYVLILPGFGIISHICLSLSNNDDSFGYYGLLFAMFSIV-----CLGSVVWAHHMFTVG 294 (514)
T ss_pred CCCCCCCCHHCCCHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHEEEEECCEEECC
T ss_conf 677987235404510058973632004227999999987407865133668999999998-----760146742446238
Q ss_pred CCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 1112127422044789999999999999999996244307674716899999999999999999999987640530
Q gi|254780473|r 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTR 491 (671)
Q Consensus 416 ~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpR 491 (671)
.| ..-+++|-. ....-++-... -+.-|.--+.|-++.-+ ....++.+||...|. +-|+.|..-
T Consensus 295 ~~-~~~~~~Fs~-----~T~lIavPTgi-kiFnWi~Tl~~g~i~~~---~p~l~f~~gfi~~F~---iGGlTGv~l 357 (514)
T MTH00048 295 LD-VKTAVFFSS-----VTMIIGVPTGI-KVFSWLYMLLNSRVRKS---DPVVWWVVSFIVLFT---IGGVTGIVL 357 (514)
T ss_pred CC-CHHHHHHHH-----HHHHHHHHHHH-HHHHHHHHHHCCCEEEC---CHHHHHHHHHHHHHH---HHHHHHHHC
T ss_conf 87-138899886-----45787600258-99999999847870436---289999999999998---352110213
No 43
>MTH00167 COX1 cytochrome c oxidase subunit I; Provisional
Probab=94.33 E-value=0.35 Score=25.76 Aligned_cols=250 Identities=18% Similarity=0.238 Sum_probs=103.7
Q ss_pred HHHHHHH-HHHHHHHHHCCCCCCHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC--CHHHH
Q ss_conf 9987556-89999997236898831331566-68999999999973335788899877763298011465432--10132
Q gi|254780473|r 210 GTTLSGI-NLVVTIIKMRCPGMTMMKMPVFV-WTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGG--NPMMY 285 (671)
Q Consensus 210 gsll~~i-Nfi~TI~~~RapGm~l~rmPlf~-W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GG--dplL~ 285 (671)
-.+.++. |+++-+. ..||.|..-|+..+. |-......+++.++-.-.++ .-|...|.|-..- ++-.
T Consensus 72 P~l~ggfgNyliPlm-iGA~DmAFPRLN~~SfWl~~~~~~l~~~S~~~~~g~--------~~GWt~YpPLS~~~~~~g~- 141 (513)
T MTH00167 72 PIMIGGFGNWLVPMM-IGAPDMAFPRMNNMSFWLLPPSFSLLLASSAVEAGV--------GTGWTVYPPLSGNIAHAGA- 141 (513)
T ss_pred HHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------CCCCCCCCCCCCCCCCCCC-
T ss_conf 999999999999997-389731436189999999999999999998636888--------9997416773124689972-
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH------HHCCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHC
Q ss_conf 21233340125799-99879999999985------310564026689999999999997533-------------22102
Q gi|254780473|r 286 INLIWIWGHPEVYI-LVLPAFGIFSEVVA------TFSGKRLFGYNSMVYATLAITILSYTV-------------WLHHF 345 (671)
Q Consensus 286 q~LFW~fGHPeVYI-liLPa~Gi~seiip------~fs~kplfgy~~~v~A~~~i~~lsf~V-------------W~HHm 345 (671)
.--+|.+|=-..-+ -++-+.-.+..++. +..|-|+|.....+-+ .+.++++.| .--|+
T Consensus 142 ~vd~~i~~l~l~GisSilgsiNfi~Ti~~mRa~Gmt~~rmPlF~Ws~l~ts--~Lll~a~PvL~~a~~mll~Dr~~~t~F 219 (513)
T MTH00167 142 SVDLAIFSLHLAGVSSILGAINFITTIHNMRAKGMEWNRVPLFVWSIWVTT--ILLLLSLPVLAAAITMLLTDRNFNTTF 219 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 499999999999889999899999999984689998553647999999999--999966419999999987052447756
Q ss_pred CCC---CCCHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHCCCCCEE-CHHHHHHHHHHHHHHHHHHHHHHCCC----
Q ss_conf 247---8758899876---5-3346788987799998787425873022-43799999999999988755653034----
Q gi|254780473|r 346 FTM---GSGANVNAFF---G-IMTMVIAVPTGAKIFNWLFTMRLGKVRF-EVPMMWTLGFMITFLIGGMTGVLLAV---- 413 (671)
Q Consensus 346 Ft~---G~~~~~~~~F---~-i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~-~~pml~~lgfi~~F~iGG~tGv~lA~---- 413 (671)
|.. |.+...+..| + -.-.++-+|.---+-.-+.+.-+.|+-| ...|.++...|. -+.-+.-+.
T Consensus 220 f~p~~GGdpvL~QhLFWffGHPEVYIliLPafGiiSeii~~fs~rk~ifGy~~mv~a~~~I~-----~lgf~VW~HHMFt 294 (513)
T MTH00167 220 FDPSGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIIIFYSGKLRSFGYLGMTWAMFTIG-----LLGFLVWAHHMFT 294 (513)
T ss_pred CCCCCCCCHHHHHCHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHCEEE
T ss_conf 68777865324503010048862441103047899999986137765223678999999999-----9987761400041
Q ss_pred CCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 32111212742204478999999999999999999624430767471689999999999999999999998764053
Q gi|254780473|r 414 PPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVT 490 (671)
Q Consensus 414 ~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~Gmp 490 (671)
...|. .-+++|-.+ ...-++-.-. -+.-|.--+.|-+..-+ .--++.+||...|. +-|+.|..
T Consensus 295 ~G~~~-~~~~~F~~~-----T~~IaiPTgi-kvF~Wi~Tl~~g~i~~~----~pml~~~gfi~~F~---iGG~TGv~ 357 (513)
T MTH00167 295 VGMDV-DTRAYFTAA-----TMVIAVPTGI-KVFSWLATLAGSKIKWE----TPLLWALGFIFLFT---VGGLTGIV 357 (513)
T ss_pred CCCCC-HHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHH---HHCCCEEE
T ss_conf 27781-277899999-----9998720268-99999999848988998----78999999999997---21433114
No 44
>MTH00099 COX3 cytochrome c oxidase subunit III; Validated
Probab=94.12 E-value=0.22 Score=27.13 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780473|r 111 QIFTAHGVIMIFFV 124 (671)
Q Consensus 111 q~~T~HG~~Mif~~ 124 (671)
++-..-...|+.|.
T Consensus 74 ~v~~glr~Gm~lFI 87 (261)
T MTH00099 74 IVQKGLRYGMILFI 87 (261)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99850033518999
No 45
>MTH00141 COX3 cytochrome c oxidase subunit III; Provisional
Probab=94.07 E-value=0.32 Score=26.00 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=14.2
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33221022478758899876533467889877999987
Q gi|254780473|r 339 TVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 339 ~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
..|+||-...|.....+....++..+-.+-.+.++..+
T Consensus 142 ~~~a~~~~~~~~~~~~~~~L~~Ti~LG~~F~~~Q~~Ey 179 (259)
T MTH00141 142 VTWAHHSLMEGDYKGALQGLGLTIILGVYFTLLQYGEY 179 (259)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999958899999999999999999999999999
No 46
>pfam00510 COX3 Cytochrome c oxidase subunit III.
Probab=93.94 E-value=0.35 Score=25.75 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=17.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33221022478758899876533467889877999987
Q gi|254780473|r 339 TVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 339 ~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
..|+||-...|.....+....++..+-.+-...|+..+
T Consensus 141 ~t~Ah~al~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~~Ey 178 (258)
T pfam00510 141 VTWAHHSLISGNRKGALQGLFLTILLAVYFTGLQAYEY 178 (258)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999825799999999999999999998899999
No 47
>MTH00039 COX3 cytochrome c oxidase subunit III; Validated
Probab=93.87 E-value=0.4 Score=25.32 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=17.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33221022478758899876533467889877999987
Q gi|254780473|r 339 TVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 339 ~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
..|+||-...|.....+....++..+-.+-+..+++.+
T Consensus 143 vt~ah~al~~~~~~~~~~~L~~Ti~LG~~F~~~Q~~EY 180 (260)
T MTH00039 143 ITWSHHSILEGNRTEAIQALFLTVLLGIYFTILQAWEY 180 (260)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999955798899999999999999999899999
No 48
>MTH00155 COX3 cytochrome c oxidase subunit III; Provisional
Probab=93.66 E-value=0.37 Score=25.59 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=14.7
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33221022478758899876533467889877999987
Q gi|254780473|r 339 TVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 339 ~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
..|+||-...|.....+....++..+-.+-+..|++.+
T Consensus 144 vt~Ah~al~~~~~~~~~~~L~~Ti~LG~~Fl~~Q~~EY 181 (261)
T MTH00155 144 VTWAHHSLMENNYSQATQSLFITILLGIYFTILQAYEY 181 (261)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999828799999999999999999999999999
No 49
>MTH00024 COX3 cytochrome c oxidase subunit III; Validated
Probab=93.62 E-value=0.21 Score=27.27 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5332210224787588998765334678898779999878
Q gi|254780473|r 338 YTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWL 377 (671)
Q Consensus 338 f~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl 377 (671)
...|+||-...|.....+....++..+-.+-++.++..+.
T Consensus 143 tvt~Ah~a~~~~n~~~~~~~l~~Ti~LG~~F~~~Q~~EY~ 182 (261)
T MTH00024 143 TVTWAHHAIISGKKKEAILGLFLTVFLGVLFTGLQAIEYY 182 (261)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999556999999999999999999999999999
No 50
>MTH00130 COX3 cytochrome c oxidase subunit III; Provisional
Probab=93.58 E-value=0.44 Score=25.08 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=20.4
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 533221022478758899876533467889877999987
Q gi|254780473|r 338 YTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 338 f~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
...|+||-...|.....+....++..+-.+-++.|++.+
T Consensus 143 tvt~Ah~al~~g~~~~~~~~L~~Ti~LG~~F~~~Q~~Ey 181 (261)
T MTH00130 143 TVTWAHHSIMEGERKQAIQSLTLTILLGFYFTFLQAMEY 181 (261)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999836899999999999999999999999999
No 51
>MTH00083 COX3 cytochrome c oxidase subunit III; Provisional
Probab=93.42 E-value=0.33 Score=25.91 Aligned_cols=37 Identities=11% Similarity=0.325 Sum_probs=13.4
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33221022478758899876533467889877999987
Q gi|254780473|r 339 TVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 339 ~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
..|+||....+. ...+....++..+-.+-+..+...+
T Consensus 140 vt~ah~~l~~~~-~~~~~~L~~Ti~LG~~F~~~Q~~EY 176 (256)
T MTH00083 140 LTWSHNYLLLNN-KSCENSLLLTIFLGLYFTGFQLMEY 176 (256)
T ss_pred HHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998385-8899999999999999999999999
No 52
>MTH00075 COX3 cytochrome c oxidase subunit III; Provisional
Probab=93.20 E-value=0.55 Score=24.42 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=15.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33221022478758899876533467889877999987
Q gi|254780473|r 339 TVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 339 ~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
..|+||-...|.....+....++..+-.+-++.|++.+
T Consensus 144 vt~Ah~al~~~~~~~~~~~L~~Ti~LG~~F~~~Q~~EY 181 (261)
T MTH00075 144 VTWAHHSIMQGNRKEAIQSLALTIILGLYFTALQAMEY 181 (261)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999938899999999999999999999999999
No 53
>MTH00189 COX3 cytochrome c oxidase subunit III; Provisional
Probab=92.98 E-value=0.54 Score=24.45 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780473|r 111 QIFTAHGVIMIFFV 124 (671)
Q Consensus 111 q~~T~HG~~Mif~~ 124 (671)
|+-..-...|+.|.
T Consensus 73 ~v~~~~~~Gm~lFI 86 (260)
T MTH00189 73 PVQKGLRYGMILFI 86 (260)
T ss_pred HHHHCCHHHHHHHH
T ss_conf 88813068889999
No 54
>MTH00118 COX3 cytochrome c oxidase subunit III; Provisional
Probab=92.26 E-value=0.72 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=14.5
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33221022478758899876533467889877999987
Q gi|254780473|r 339 TVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNW 376 (671)
Q Consensus 339 ~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnw 376 (671)
..|+||-...|.....+....++..+-.+-++.++..+
T Consensus 144 vt~Ah~al~~g~~~~~~~~L~~Ti~LG~~F~~~Q~~EY 181 (261)
T MTH00118 144 VTWAHHSIMEGNRKQAIHALTLTILLGLYFTALQAMEY 181 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999997799999999999999999999999999
No 55
>TIGR02897 QoxC cytochrome aa3 quinol oxidase, subunit III; InterPro: IPR014246 This entry encodes subunit III of the aa3-type quinone oxidase (QoxC), one of several bacterial terminal oxidases . This complex couples oxidation of reduced quinones to the reduction of molecular oxygen to water, and the pumping of protons to form the proton gradient utilised for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms at the active site..
Probab=71.32 E-value=5.9 Score=17.41 Aligned_cols=76 Identities=17% Similarity=0.358 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 889999999999999999999971------76778883134786558778852045887799999-99998755689999
Q gi|254780473|r 149 PFLNNFSFWMTVAGAVVIMCSLFI------GEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIA-GIGTTLSGINLVVT 221 (671)
Q Consensus 149 Prlna~sfWl~~~g~~l~~~S~~~------g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~-gigsll~~iNfi~T 221 (671)
-|||-++||+++-+-+.+-.++|. +++.++| +. ..+.+-+-+.+. -..-+.++---=..
T Consensus 7 g~LN~LGFWIFlgAE~~LFaTLFAtylvl~~~G~~~G-------------~~-~a~lFEL~lvLI~T~~LL~SSfTCGi~ 72 (190)
T TIGR02897 7 GRLNILGFWIFLGAEIALFATLFATYLVLRKAGDAAG-------------KT-PAELFELKLVLIMTFLLLASSFTCGIA 72 (190)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------------CC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3312026789999999999999999999851566677-------------86-177876899999999999732366688
Q ss_pred HHHHCCCCCCHHHCCHHHHHH
Q ss_conf 997236898831331566689
Q gi|254780473|r 222 IIKMRCPGMTMMKMPVFVWTA 242 (671)
Q Consensus 222 I~~~RapGm~l~rmPlf~W~~ 242 (671)
|..||....++ +..|.+
T Consensus 73 I~~MR~~~~K~----~~~w~i 89 (190)
T TIGR02897 73 IYEMRKENQKL----MLIWSI 89 (190)
T ss_pred HHHHHHHHHHH----HHHHHH
T ss_conf 98750120356----899999
No 56
>PRK11099 putative inner membrane protein; Provisional
Probab=71.30 E-value=5.9 Score=17.41 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999999996244307674716899999999999999999999987640530--3002587005799999999
Q gi|254780473|r 433 TIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTR--RLSQYEDTTLQVYYVVALL 510 (671)
Q Consensus 433 vl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpR--R~~~y~~~~~~~~n~isti 510 (671)
.++||.+|++ |+-.=---.+|-++...-|..|+|..++|+..-.. ... ...+. ....++.|.++......-.
T Consensus 288 ~~iGg~lfg~--g~~~aggc~~g~~~r~geg~~~~~~~~ig~iiG~~-lla---~~w~~~~~~~~~~~pki~l~~~fG~~ 361 (398)
T PRK11099 288 AVIGGLLFGF--GIVLAGGCETGWMYRAVEGQVHFWIVGLGNVIGAT-LLA---YYWDDFAPALATPWPKINLLETFGPL 361 (398)
T ss_pred HHHHHHHHHH--HHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHCCCCEEEEHHHHCCC
T ss_conf 7888888762--15404774113242116841999999999999799-999---77467788871578557314774842
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999744
Q gi|254780473|r 511 GAVLIGIGVFSFVLSFIVSFLN 532 (671)
Q Consensus 511 Ga~l~~~g~l~f~~nl~~S~~~ 532 (671)
|+++.-...+..++-+..-+.+
T Consensus 362 gal~~~~~ll~~~~~l~~~~~k 383 (398)
T PRK11099 362 GGLLITYLLLFLALLLVIGWEK 383 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0999999999999999999988
No 57
>KOG4768 consensus
Probab=69.23 E-value=0.89 Score=22.97 Aligned_cols=62 Identities=23% Similarity=0.556 Sum_probs=39.8
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHH--HHHHHHHHHHHHHHH
Q ss_conf 30300001479999999999999999999999999985076756677668--78989--999999999999999
Q gi|254780473|r 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLD--AHHYD--QIFTAHGVIMIFFVA 125 (671)
Q Consensus 56 ~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~--~~~Yn--q~~T~HG~~Mif~~a 125 (671)
+.|+.+++||+|.++ .++++-...| ++.+|++++.|.. .+++ .|.++ |+=|..|+-++|=+.
T Consensus 3 qrwly~~n~rdiaVl--ml~I~sim~g---sl~irm~laA~~s---q~lp~tsql~sg~~is~~r~~~~vfry~ 68 (796)
T KOG4768 3 QRWLYSTNARDIAVL--MLAIFSIMAG---SLIIRMELAAPGS---QYLPGTSQLFSGVQISTVRGCHSVFRYI 68 (796)
T ss_pred EEEEECCCCCCCEEE--EEHHHHHHCC---CCEECCCCCCCCC---CCCCCCHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 156302577751576--3235776412---4010011147777---4368705540551245677888887403
No 58
>pfam05976 consensus
Probab=69.00 E-value=6.6 Score=17.08 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32212333401257999987999999
Q gi|254780473|r 284 MYINLIWIWGHPEVYILVLPAFGIFS 309 (671)
Q Consensus 284 L~q~LFW~fGHPeVYIliLPa~Gi~s 309 (671)
-|+.|-=-|+|.++=.-+-...-..+
T Consensus 252 ~y~~L~~~f~~sd~l~r~~~ll~~~a 277 (706)
T pfam05976 252 PYQTLAEAFFHSDILFRCQRLLELQA 277 (706)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 78999978554739999999999999
No 59
>pfam11070 DUF2871 Protein of unknown function (DUF2871). This family of proteins has no known function.
Probab=64.76 E-value=7.9 Score=16.53 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHCCCC--CCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999887556530343--211121274220447899999999999999999962443076747168999999999999
Q gi|254780473|r 397 FMITFLIGGMTGVLLAVP--PADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGF 474 (671)
Q Consensus 397 fi~~F~iGG~tGv~lA~~--~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf 474 (671)
++...++|=++||.---- ..|+ .-.|.--+.|-|.-+.|-..|-+... +.|.+... +.|.=++-||.+.+|.
T Consensus 8 a~~Y~ilgl~~GvFYREfTK~~~f-~G~T~L~~vHtH~lvLG~~~fLi~ll----l~k~f~l~-~~k~f~~f~~vYniGl 81 (131)
T pfam11070 8 SFFYLILGLLSGVFYREFTKANGF-TGRTQLSLVHTHLLVLGFFFFLIVLL----LEKVFKLS-KNKLFNKFFVVYNIGL 81 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCCEEHHHHHHHHHHHHHHHHHHHHH----HHHHHHHC-CCCCCCHHHHHHHHHH
T ss_conf 999999999967999999988388-77241167889999999999999999----99985013-0545052566343469
Q ss_pred HHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987640530300258700579999999999999999999999999
Q gi|254780473|r 475 YLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFI 527 (671)
Q Consensus 475 ~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~ 527 (671)
..+...|-.-|......-- . + ....-++-+|..++.+|.+.++..+-
T Consensus 82 ~~tv~mm~vrGi~qV~g~~--~-~---~aisGiAGigHi~l~vglvl~f~~L~ 128 (131)
T pfam11070 82 LLTVGMMLIRGILQVLGAD--F-S---KALSGIAGIGHILLTVGLILFFLLLK 128 (131)
T ss_pred HHHHHHHHHHHHHHHCCCC--C-C---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999799981775--1-0---77776767749999999999999986
No 60
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=62.40 E-value=8.7 Score=16.25 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHH
Q ss_conf 9999999999999998314898455678999999
Q gi|254780473|r 623 ALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSE 656 (671)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 656 (671)
+++..+++...++..+++++-.|+.++.|+.+.+
T Consensus 14 ~~~~~l~~a~~Lil~al~~ni~yF~TPsEv~~~~ 47 (161)
T PRK13165 14 AVLAGLALTIGLVLYALRSNIDLFYTPGEILYGK 47 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEECHHHHHCCC
T ss_conf 9999999999999999871731886789985033
No 61
>pfam04332 DUF475 Protein of unknown function (DUF475). Predicted to be an integral membrane protein with multiple membrane spans.
Probab=61.07 E-value=9.2 Score=16.09 Aligned_cols=111 Identities=16% Similarity=0.368 Sum_probs=57.7
Q ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCHHHHHHHHH-HHHHHH
Q ss_conf 750633234430300001479999999999999999999999999985076756----677668789899999-999999
Q gi|254780473|r 46 TYYRLWGYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGG----GEGYLDAHHYDQIFT-AHGVIM 120 (671)
Q Consensus 46 t~~~~w~~lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~----~~~~l~~~~Ynq~~T-~HG~~M 120 (671)
+..|+|...||+|+- ..|+.--++++=..+ -+++-.--+ .-++ ...+-+|+.|-+.++ +|..+.
T Consensus 9 ~vLk~Ms~~Wqk~FL-----t~GIlIAVFGMRlvF-----PllIV~~~a-~lgp~ea~~lAl~~p~~Y~~~l~~ahp~Ia 77 (294)
T pfam04332 9 SILKRMSPFWQKMFL-----TIGILIAVFGMRLIF-----PLVIVAVSA-GLDPIEAMKLALENPDRYEELLTAAHPSIA 77 (294)
T ss_pred HHHHHCCHHHHHHHH-----HHHHHHHHHHHHHHH-----HHHHHHHHC-CCCHHHHHHHHHCCHHHHHHHHHHCCHHHH
T ss_conf 878643699999999-----981999989888766-----578876527-889899999983697889999984368899
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999998649864005-----8899999----99999999999999971
Q gi|254780473|r 121 IFFVAMPMITGIMNFVVPLQIGARDVSF-----PFLNNFS----FWMTVAGAVVIMCSLFI 172 (671)
Q Consensus 121 if~~a~p~~~G~~n~lvPl~iGardlaF-----Prlna~s----fWl~~~g~~l~~~S~~~ 172 (671)
.|.-+.=++.++ ||+.- .||..+ .++..++ .+......+++..+...
T Consensus 78 aFGG~FLlmvfL-~fffd----ek~~~Wl~~iE~~l~k~g~~~~~~v~i~l~~ll~~~~~~ 133 (294)
T pfam04332 78 AFGGMFLLMVFL-DFFFD----DRDIKWLKWIERPLARIGKLDAISAIIVFVLLLIFAFFF 133 (294)
T ss_pred HHHHHHHHHHHH-HHHCC----CCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 885999999999-87020----663654369879998727712129999999999999983
No 62
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=60.45 E-value=9.4 Score=16.02 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH
Q ss_conf 999999999999999831489845567899999
Q gi|254780473|r 623 ALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFS 655 (671)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (671)
+++..+++...++.++++++-.|+.++.|+...
T Consensus 14 ~~~~~l~~a~~Lvl~al~~ni~yFytPsev~~~ 46 (159)
T PRK13150 14 AVLAGLGLTTALVLYALRANIDLFYTPGEILYG 46 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEECHHHHHCC
T ss_conf 999999999999999987174488678998512
No 63
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=57.79 E-value=10 Score=15.73 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=36.7
Q ss_pred HCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0000147999999999999-------999999999999998507675667766878989999999999999999999999
Q gi|254780473|r 59 FTSVDHKKIGIMYIILSLV-------MLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITG 131 (671)
Q Consensus 59 ltt~dHK~IGi~Yiv~a~~-------~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G 131 (671)
.|-+|.|++-..-+..++= +.+-| ..|..+ .++-.|.. +...++...-++.-+-|++=|+-.=
T Consensus 6 ~~~~d~~~~rk~i~a~~~G~~lEwyDF~iYg-~~A~~i-~~~FFP~~--------~~~~~ll~tfa~favgf~~RPlGgi 75 (490)
T PRK10642 6 VTIIDDGKLRKAITAASLGNAMEWFDFGVYG-FVAYAL-GKVFFPGA--------DPSVQMIAALATFSVPFLIRPLGGL 75 (490)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2334889999999999986899999999999-999999-98619999--------9469999999999999998857999
Q ss_pred -HHHHHHHHHCCCC
Q ss_conf -9999999864986
Q gi|254780473|r 132 -IMNFVVPLQIGAR 144 (671)
Q Consensus 132 -~~n~lvPl~iGar 144 (671)
|+. +- =.+|.|
T Consensus 76 vfG~-lg-Dr~GRk 87 (490)
T PRK10642 76 FFGM-LG-DKYGRQ 87 (490)
T ss_pred HHHH-HH-HHHCCH
T ss_conf 9999-99-852109
No 64
>pfam08374 Protocadherin Protocadherin. The structure of protocadherins is similar to that of classic cadherins (pfam00028), but particularly on the cytoplasmic domains they also have some unique features. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localized mainly at cell-cell contact sites. Their expression seems to be developmentally regulated.
Probab=57.50 E-value=9.6 Score=15.97 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=8.0
Q ss_pred CCCCCCCCCCC
Q ss_conf 71012699811
Q gi|254780473|r 547 RTLEWSISSPS 557 (671)
Q Consensus 547 ~tLEW~~~sPp 557 (671)
.+=||.+|.|.
T Consensus 78 e~~d~~tP~~~ 88 (223)
T pfam08374 78 ETEDWFSPNQE 88 (223)
T ss_pred CCCCCCCCCCC
T ss_conf 45543378852
No 65
>TIGR01191 ccmC heme exporter protein CcmC; InterPro: IPR003557 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK , CcmF ,, NrfE and CcbS . These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus . Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex . It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes . However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes . Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane.
Probab=56.45 E-value=9 Score=16.16 Aligned_cols=52 Identities=31% Similarity=0.466 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999975332210224--787588998765334678898779999878742587
Q gi|254780473|r 325 SMVYATLAITILSYTVWLHHFFT--MGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLG 383 (671)
Q Consensus 325 ~~v~A~~~i~~lsf~VW~HHmFt--~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G 383 (671)
..+|.+.+|+-+.+.||-||+.. .......-++|+ .|+.=||-- |---|||-
T Consensus 24 ~~vY~~maias~~~Lvwk~~~~~~~~~a~ApiGA~FT----l~aLvTGs~---WGkPmWGT 77 (185)
T TIGR01191 24 IGVYVMMAIASFIFLVWKHKLADLAAKAAAPIGAVFT----LIALVTGSL---WGKPMWGT 77 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCC---CCCCCCCC
T ss_conf 9999999999999999999999999997423899999----999997203---78987775
No 66
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=48.52 E-value=14 Score=14.75 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHH
Q ss_conf 99999999999999998314898455678999999
Q gi|254780473|r 622 LALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSE 656 (671)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 656 (671)
++++..+++.+.++..+++++-.|+.++.|+.+.+
T Consensus 13 ~~~~~~l~~a~~Lil~al~~ni~yFyTPsEi~~~~ 47 (149)
T PRK13254 13 LGALAALGLAVALVLYALRQNIVFFYTPSEVAEGE 47 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHCEEEEECHHHHHCCC
T ss_conf 99999999999999999862806997889994376
No 67
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=44.61 E-value=17 Score=14.35 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHH
Q ss_conf 999999999999998314898455678999999
Q gi|254780473|r 624 LLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSE 656 (671)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 656 (671)
++..+++...++.++++++..|+.++.|+.+.+
T Consensus 15 ~~~~~~~av~Lil~al~~ni~yF~TPsEv~~~~ 47 (156)
T PRK13159 15 VLTAAALAVTLIVFALQRNMSYLFTPSQVRAGA 47 (156)
T ss_pred HHHHHHHHHHHHHHHHHHCEEEEECHHHHHCCC
T ss_conf 999999999999999861827997899983566
No 68
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein; InterPro: IPR014270 Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (IPR013424 from INTERPRO), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see IPR013426 from INTERPRO), recognises and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase ..
Probab=42.97 E-value=18 Score=14.19 Aligned_cols=127 Identities=22% Similarity=0.389 Sum_probs=67.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 22123334012---579999879999999985310564026689999999999997533221022478758899876533
Q gi|254780473|r 285 YINLIWIWGHP---EVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIM 361 (671)
Q Consensus 285 ~q~LFW~fGHP---eVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~ 361 (671)
..-+||+|-=. .||+.|+|-+|+= .|..++-|..-..........++|=-+|.+.+.--+--.+. ..++.|+|+-
T Consensus 9 ~~~~FWlWNLTy~~L~~~~I~PF~~~P-~~~~~~~G~~~~~~~~~~~~L~A~P~~~~~~G~~~F~~~P~-~LI~LFYGVE 86 (952)
T TIGR02921 9 FELLFWLWNLTYLVLVYLLILPFVTLP-LVLAAAIGLISIEFALALVLLVAVPALSIILGLTRFLKNPV-KLIKLFYGVE 86 (952)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHH
T ss_conf 999999999999999998885234677-89987514137899999999999889999863455520507-7777762014
Q ss_pred H--------------------HHHHHHHHHHHHHHHHHHCCC-CCEECHHHHH--HHHHHHHHHHHHHHHHHCCC
Q ss_conf 4--------------------678898779999878742587-3022437999--99999999988755653034
Q gi|254780473|r 362 T--------------------MVIAVPTGAKIFNWLFTMRLG-KVRFEVPMMW--TLGFMITFLIGGMTGVLLAV 413 (671)
Q Consensus 362 T--------------------m~IaIPTgvkiFnwl~Tl~~G-~ir~~~pml~--~lgfi~~F~iGG~tGv~lA~ 413 (671)
. --|-+--+|-+|..++.+|+| .-|+..-+-| ....+.+.+.|=-.|.+++.
T Consensus 87 ~P~~~~~L~~LFL~REL~P~~~~~L~~~~~~~~Ay~~~L~~G~~~R~~~GlqW~~l~~~~~ML~~G~Y~~~~L~~ 161 (952)
T TIGR02921 87 APLIVLMLLRLFLLRELTPAVSQVLLTILVALAAYLAELFGGVASRFKIGLQWLRLLLATLMLLFGLYAALLLLF 161 (952)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999998888876157327899999999999998887511000103338999999999999999999999999
No 69
>TIGR00804 nupC nucleoside transporter, NupC family; InterPro: IPR008276 Nucleosides are hydrophilic molecules and require specialised transport proteins for permeation of cell membranes. There are two types of nucleoside transport processes: equilibrative bidirectional processes driven by chemical gradients and inwardly directed concentrative processes driven by an electrochemical gradient . This entry represents a family of Concentrative Nucleoside Transporter (CNT) proteins found in bacteria and eukaryotes. So far, the members found in microorganisms such as bacteria and fungi are H+ symporters, while the mammalian members are Na+ symporters. The microbial proteins include broad specificity transporters, such as the Escherichia coli NupC protein which transports all nucleosides (both ribo- and deoxyribonucleosides) except hypoxanthine and guanine nucleosides . Other proteins have higher specificity, like the Bacillus subtilis NupC transporter which is specific for pyrimidine nucleosides (cytidine and uridine and the corresponding deoxyribonucleosides). A recently characterised fungal protein, the first transporter of this type to be described in eukaryotes, exhibited transport activity for adenosine, uridine, inosine and guanosine but not cytidine, thymidine or the nucleobase hypoxanthine . The characterised mammalian proteins can be divided into three subgroups; CNT1, CNT2 and CNT3 . CNT1 preferentially transports pyrimidines and weakly transports adenosine. Several antiviral and anticancer nucleoside analogues, including AZT and dFdC are also substrates for CNT1. CNT2 selectively transports purines, and the human form has also been shown to facilitate the uptake of some antiviral compounds including ddI and ribavirin. CNT3 has a broader specificity, transporting both purines and pyrimidines. Several anticancer nucleoside analogues such as CdA, dFdC and FdU are also transported by CNT3. Substrate specificity appears to depend on a region containing transmembrane regions 7, 8 and 9. Mutation of just four residues in this region was sufficient to convert the activity of human CNT1 to that of CNT2. At least three other concentrative nucleoside transport activities have been described in mammalian cells, but the proteins responsible for these activities have not yet been identified.; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane.
Probab=42.84 E-value=17 Score=14.21 Aligned_cols=188 Identities=24% Similarity=0.330 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 22123334012579999879999999985310564026689999999999997533221022478758899876533467
Q gi|254780473|r 285 YINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMV 364 (671)
Q Consensus 285 ~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~ 364 (671)
++|.| -||.|..+++=|..+-+ ++.++|---..-.|+++=.+++--+ ++|.++ ....+++-|
T Consensus 144 ~~~~F--lGqtEapl~ikpyL~~m-------t~self~~~~~Gma~iaGsv~gaY~------~mG~~~--~Yl~aAs~l- 205 (425)
T TIGR00804 144 AANIF--LGQTEAPLVIKPYLGKM-------TDSELFTVMTSGMATIAGSVLGAYA------SMGVPA--TYLIAASVL- 205 (425)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHH-------CHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCH--HHHHHHHHH-
T ss_conf 99999--87436999999998741-------4469899999734666899999998------738889--899999999-
Q ss_pred HHHHHHHHHHHHHHHHC---------CCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHH
Q ss_conf 88987799998787425---------873022437999999999999887556530343211121274220447899999
Q gi|254780473|r 365 IAVPTGAKIFNWLFTMR---------LGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTII 435 (671)
Q Consensus 365 IaIPTgvkiFnwl~Tl~---------~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~ 435 (671)
+.|.+.-+=+.+.--- +-+.+-. =.-+|+=.-.-|.++|+-.+..-.- +.+.
T Consensus 206 -~ap~~L~~akl~~P~~e~~~~~~~~~~~~e~~----~~~~f~Ea~~~g~~~g~~~a~~vaA--------------~Lia 266 (425)
T TIGR00804 206 -AAPGGLAFAKLIYPETEESKEKSEEDVKLEEG----DEKNFFEALSNGALAGVKVAINVAA--------------MLIA 266 (425)
T ss_pred -HHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHH
T ss_conf -98999999863267534411022102667777----5468799999999999999999999--------------9999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999999999624430767-471689999999999999999999998764053030025870057999999999999
Q gi|254780473|r 436 GGVVFGLFAGIVYWFPKAFGYQ-LNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVL 514 (671)
Q Consensus 436 gg~vf~~fagiyyW~Pk~~Gr~-l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l 514 (671)
--++.+..-|+--|.--++|.. ++-. .| +--.|.|+=++ +|.|.. |+.-+.++. +
T Consensus 267 FvallAliNgil~~~gg~~G~~glsfQ---------~I-fgY~f~PlAfl--mGv~dn--------w~da~~va~----l 322 (425)
T TIGR00804 267 FVALLALINGILSVVGGLFGYGGLSFQ---------LI-FGYVFRPLAFL--MGVPDN--------WSDALLVAQ----L 322 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHH---------HH-HHHHHHHHHHH--HCCCCC--------HHHHHHHHH----H
T ss_conf 999999999999888533246762188---------99-99997347644--146776--------667889999----9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999997449535
Q gi|254780473|r 515 IGIGVFSFVLSFIVSFLNRSKL 536 (671)
Q Consensus 515 ~~~g~l~f~~nl~~S~~~~~~~ 536 (671)
++. =++.|=++...+=++.
T Consensus 323 ~G~---Kla~NEFVAY~~L~~y 341 (425)
T TIGR00804 323 MGT---KLAVNEFVAYLDLSQY 341 (425)
T ss_pred HHH---HHHHHHHHHHHHHHHH
T ss_conf 888---8887777888777775
No 70
>CHL00035 psbC photosystem II 44 kDa protein
Probab=40.56 E-value=19 Score=13.94 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEC-CCCCHHHHH
Q ss_conf 8999971012699811998947596078-455047755
Q gi|254780473|r 542 DPWDGRTLEWSISSPSPQYNFAFTPIVS-TIDAWEHMK 578 (671)
Q Consensus 542 dPW~~~tLEW~~~sPpp~~nF~~~P~v~-~~d~~~~~k 578 (671)
.-||.|+- |.- |----|+-++-+++ |..||-+++
T Consensus 345 r~wd~~~~-wle--p~R~png~d~~ki~~diqp~q~rr 379 (461)
T CHL00035 345 RFWDLRAP-WLE--PLRGPNGLDLSKLKKDIQPWQERR 379 (461)
T ss_pred CCCCCCCC-CCC--CCCCCCCCCCCCHHHCCCHHHHHH
T ss_conf 13345576-420--014776333210020243166654
No 71
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=39.58 E-value=20 Score=13.84 Aligned_cols=35 Identities=9% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
Q ss_conf 898999999999999999999999-99999999864
Q gi|254780473|r 107 HHYDQIFTAHGVIMIFFVAMPMIT-GIMNFVVPLQI 141 (671)
Q Consensus 107 ~~Ynq~~T~HG~~Mif~~a~p~~~-G~~n~lvPl~i 141 (671)
+-|-|+.--|--.-+|..+-+-++ -|-|+.--|-+
T Consensus 80 nd~qqlL~d~~n~DlfIIGGK~l~~~Fin~aD~LIV 115 (505)
T PRK00478 80 NDLKKLLIDFSNVDLFIIGGKKTIEQFIKYADQLII 115 (505)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHEEEE
T ss_conf 569999987203707998578899999985020144
No 72
>KOG4320 consensus
Probab=39.47 E-value=20 Score=13.83 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHC--CCHHHCCCC-
Q ss_conf 44789999999999999-999996244307674716-89999999----9999999999999987640--530300258-
Q gi|254780473|r 427 VAHFHNTIIGGVVFGLF-AGIVYWFPKAFGYQLNSF-WGKVSFWC----WFVGFYLAFMPLYALGLKG--VTRRLSQYE- 497 (671)
Q Consensus 427 VAHFHyvl~gg~vf~~f-agiyyW~Pk~~Gr~l~e~-lgk~~Fwl----~~iGf~l~F~pm~~lGl~G--mpRR~~~y~- 497 (671)
+.|.|+ + |++.+.- +-+|.|+--.--.+...+ ..+..|++ ..+- ...|++|...+-.- -||. -+|
T Consensus 115 i~~VH~--~-ga~laF~~g~LY~~~Qa~LSy~~~p~~~~~~v~~iR~~lavi~-~~~~~~~lv~s~v~~~~~~~--W~p~ 188 (253)
T KOG4320 115 IRIVHD--I-GAVLAFGAGLLYMWFQAILSYQRDPNIPTLIVFYIRLVLAVIC-CASFFFMLVASSVFHSDKLP--WNPR 188 (253)
T ss_pred CHHHHH--H-HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCC--CCCC
T ss_conf 022232--3-4068744248999999999863188856300367899999999-99999999987773157677--7889
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 70057999999999999999999999999999744
Q gi|254780473|r 498 DTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532 (671)
Q Consensus 498 ~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~ 532 (671)
|++|+ +..++++.-..+.+++..|+.....-.|+
T Consensus 189 d~~~~-lh~isai~EW~~a~~F~~FilTF~~EFr~ 222 (253)
T KOG4320 189 DPGYQ-LHAISAICEWVCAISFIFFILTFIYEFRF 222 (253)
T ss_pred CCCEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99613-00678999999998777665456788777
No 73
>pfam03842 Silic_transp Silicon transporter.
Probab=37.83 E-value=21 Score=13.66 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=21.7
Q ss_pred HHCCCCCEEECHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 831489845567899999999751255000145
Q gi|254780473|r 638 TFNYNDGYEVSAKDVAFSEEVHRKMNMPKDREH 670 (671)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 670 (671)
.+++|+-|.=.+|| |.++.+.+.+.+.++||
T Consensus 425 gfq~DEvYvGT~ee--raa~~~~d~~~~~~~~~ 455 (513)
T pfam03842 425 KFQYDEVYVGTPEE--RAAQDKADAQMPSGAEH 455 (513)
T ss_pred CCCCCCEEECCHHH--HHHCCCCCCCCCCCCCH
T ss_conf 67766268678877--64234651116787410
No 74
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=37.23 E-value=21 Score=13.60 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999999985076
Q gi|254780473|r 71 YIILSLVMLFRGFADAIMMRLQQAIA 96 (671)
Q Consensus 71 Yiv~a~~~ll~Gg~~allmR~qla~p 96 (671)
|-+-.++..++|-..--+.|..+...
T Consensus 27 ~~~~~f~~~figY~~~Y~~R~nfs~a 52 (463)
T PRK09556 27 PFMQSYLVVFIGYLTMYLIRKNFNIA 52 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 99999999999999999702028976
No 75
>pfam06738 DUF1212 Protein of unknown function (DUF1212). This family represents a conserved region within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some family members are membrane proteins.
Probab=37.06 E-value=15 Score=14.56 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=14.7
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899-88589999999999999999999
Q gi|254780473|r 594 MPS-NTATGIILAALSIVFSFAMVWYM 619 (671)
Q Consensus 594 mP~-~t~~~~~~~~~~~~~~f~~~~~~ 619 (671)
.|. -+.+-..++.+....+|++++.-
T Consensus 97 ~~~~y~~~~~~l~~~~~~~~fa~l~gG 123 (193)
T pfam06738 97 APPPYPRWLVVLAAGLASAAFAVLFGG 123 (193)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 788998799999999999999999879
No 76
>PRK10873 hypothetical protein; Provisional
Probab=36.31 E-value=22 Score=13.50 Aligned_cols=63 Identities=22% Similarity=0.180 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 716899999999999999999999987640530300258700579999999999999999999999999997449535
Q gi|254780473|r 459 NSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKL 536 (671)
Q Consensus 459 ~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~ 536 (671)
..++-++..|++.+|..+.....|.+-+.+.+ .+-.+.-+|+..+.+|-+++.+..+ |.||++
T Consensus 65 ~~~~~~~a~~~f~~Gi~lFSGSLY~lalt~~~------------~lg~ITPiGG~~~i~GW~~l~~~~~---r~kk~~ 127 (131)
T PRK10873 65 ISIWFYWSSVFLALGTVLFSGSLYCLALSHLR------------LWAYITPVGGVSFLAGWALMLIGAI---RLKRKG 127 (131)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------HHHHCCCHHHHHHHHHHHHHHHHHH---HHCCCC
T ss_conf 21689999999999999981689999974982------------4451077627999999999999999---826655
No 77
>pfam01654 Bac_Ubq_Cox Bacterial Cytochrome Ubiquinol Oxidase. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II
Probab=34.78 E-value=23 Score=13.34 Aligned_cols=92 Identities=18% Similarity=0.308 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47999999999999999999999999998507675667766878989999999999999999999999999999986498
Q gi|254780473|r 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGA 143 (671)
Q Consensus 64 HK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGa 143 (671)
.||......-.-.+.+.+|-+-++.|-.|....=++-+.+ -.|.+-..+..-|..--|. -....|+.-| |
T Consensus 42 y~~larfw~k~f~I~FavGvvTGiv~eFqfG~nWs~~s~~-vG~vfG~pLa~E~l~AFFl--Es~FLgl~lf------G- 111 (430)
T pfam01654 42 YKRMARFWGKLFAINFAMGVVTGIVMEFQFGTNWSGYSRF-VGDVFGAPLAIEGLTAFFL--EATFLGLMLF------G- 111 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------H-
T ss_conf 9999999999999999999877788999856120989999-8987405789999999999--9999999999------4-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6400588999999999999999
Q gi|254780473|r 144 RDVSFPFLNNFSFWMTVAGAVV 165 (671)
Q Consensus 144 rdlaFPrlna~sfWl~~~g~~l 165 (671)
+|---||+-.++-|+...|+.+
T Consensus 112 w~rv~~~~H~~~~~~Vaig~~~ 133 (430)
T pfam01654 112 WDRVSKKLHLLATWLVAIGTNL 133 (430)
T ss_pred HHHCCHHHHHHHHHHHHHHHHH
T ss_conf 7642778999999999999999
No 78
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=33.85 E-value=24 Score=13.25 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999997449535
Q gi|254780473|r 513 VLIGIGVFSFVLSFIVSFLNRSKL 536 (671)
Q Consensus 513 ~l~~~g~l~f~~nl~~S~~~~~~~ 536 (671)
....++...++-+++.|..+|+-.
T Consensus 206 l~~~~~l~~~lGDL~eS~iKR~~g 229 (265)
T COG0575 206 LGLLLVLTSQLGDLFESYIKRLLG 229 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999877899999999719
No 79
>KOG2103 consensus
Probab=33.46 E-value=21 Score=13.60 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 87556530343211121274220447899999999999999999962443076
Q gi|254780473|r 404 GGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGY 456 (671)
Q Consensus 404 GG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr 456 (671)
+|-+--.-.+..-|-+.||-.|++.--|.+.-.-.. ..----=+|+.||+
T Consensus 287 ~~d~e~~~si~~~ss~~~~~V~~vn~l~~~~~~~~~---~~~~~l~~p~~F~~ 336 (910)
T KOG2103 287 GGDTEASKSIHPESSYLFDQVFIVNNLYLVLDAQSI---LLEQKLSRPEVFGT 336 (910)
T ss_pred CCCCCCCEEEECCCCHHHHEEEEHHHHHHCCHHHHH---HHHCCCCCCHHCCE
T ss_conf 356554303420420133302341003321414453---10003575312060
No 80
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=32.82 E-value=25 Score=13.14 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 05799999999999999999999999999974495356899
Q gi|254780473|r 500 TLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTI 540 (671)
Q Consensus 500 ~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~~~~ 540 (671)
+++|.....---+..+.+|.++.+.|.+..-+++|+.++..
T Consensus 179 ~~~~~~l~~lppGaFi~lGllia~~n~~~~~~~~r~~~~~~ 219 (224)
T PRK12405 179 DDSPFLLAILPPGAFIGLGLLIALKNLIDKRKKARKAEAAA 219 (224)
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 67751678739889999999999999999999862532434
No 81
>COG2056 Predicted permease [General function prediction only]
Probab=32.65 E-value=25 Score=13.12 Aligned_cols=12 Identities=17% Similarity=0.573 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999879999999
Q gi|254780473|r 299 ILVLPAFGIFSE 310 (671)
Q Consensus 299 IliLPa~Gi~se 310 (671)
-+.+|+.|++--
T Consensus 193 am~ip~lgMi~G 204 (444)
T COG2056 193 AMWIPGLGMIVG 204 (444)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 82
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CysT, one of two homologous, tandem permeases in the sulphate ABC transporter system; the other is CysW (IPR011866 from INTERPRO). The sulphate transporter has been described in Escherichia coli as transporting sulphate, thiosulphate, selenate, and selenite. Sulphate transporters may also transport molybdate ion if a specific molybdate transporter is not present.; GO: 0015116 sulfate transmembrane transporter activity, 0008272 sulfate transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=32.62 E-value=25 Score=13.11 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf 99999999999999999-99999999974495
Q gi|254780473|r 504 YYVVALLGAVLIGIGVF-SFVLSFIVSFLNRS 534 (671)
Q Consensus 504 ~n~istiGa~l~~~g~l-~f~~nl~~S~~~~~ 534 (671)
|+-.+.||.+++.+++. ++++|++..+.+|+
T Consensus 234 Y~gATaIA~vmL~~SF~~Ll~IN~lQ~~~~r~ 265 (265)
T TIGR02139 234 YAGATAIAVVMLLISFVLLLFINLLQWRALRY 265 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 37899999999999999999999999975069
No 83
>TIGR03039 PS_II_CP47 photosystem II chlorophyll-binding protein CP47.
Probab=32.50 E-value=25 Score=13.10 Aligned_cols=20 Identities=20% Similarity=0.452 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999999999999999999
Q gi|254780473|r 599 ATGIILAALSIVFSFAMVWY 618 (671)
Q Consensus 599 ~~~~~~~~~~~~~~f~~~~~ 618 (671)
|.-+--.++.+.+.+|-+||
T Consensus 450 W~t~~H~~~a~~f~~GH~WH 469 (504)
T TIGR03039 450 WFTFAHAVFALLFFFGHIWH 469 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 87888999999999876651
No 84
>KOG4664 consensus
Probab=31.68 E-value=23 Score=13.40 Aligned_cols=29 Identities=7% Similarity=-0.180 Sum_probs=12.3
Q ss_pred HHCCCCCCCEEECCCEEHHHHHHHHHHHH
Q ss_conf 53034321112127422044789999999
Q gi|254780473|r 409 VLLAVPPADFTLHNSLFLVAHFHNTIIGG 437 (671)
Q Consensus 409 v~lA~~~~D~~lHnT~fVVAHFHyvl~gg 437 (671)
...+....|-..|+++.+|.|+|+...++
T Consensus 69 g~ht~~v~~gi~~g~ilfV~se~~~f~~~ 97 (261)
T KOG4664 69 GHHTIAVQKGLRVGFILFVLSEVLFFFGI 97 (261)
T ss_pred CEEHHHHHHCCEEEEEEHHHHHHHHHHHH
T ss_conf 30035754220133542357899999999
No 85
>PRK09796 cellobiose/arbutin/salicin-specific PTS system components IIBC; Provisional
Probab=31.60 E-value=26 Score=13.00 Aligned_cols=36 Identities=14% Similarity=0.315 Sum_probs=19.9
Q ss_pred HHHHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 332210224787588998765-334678898779999
Q gi|254780473|r 339 TVWLHHFFTMGSGANVNAFFG-IMTMVIAVPTGAKIF 374 (671)
Q Consensus 339 ~VW~HHmFt~G~~~~~~~~F~-i~Tm~IaIPTgvkiF 374 (671)
..|..+.+--=+|...+.+|. ..|++|.+|-..-++
T Consensus 231 ~s~ier~l~K~iP~~l~~i~~P~ltlli~~~l~l~vi 267 (472)
T PRK09796 231 LSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLI 267 (472)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999997481998998998999999999999999
No 86
>pfam03100 CcmE CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Probab=31.51 E-value=26 Score=12.99 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHH
Q ss_conf 999999999999999831489845567899999
Q gi|254780473|r 623 ALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFS 655 (671)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (671)
.++..+++...++..+++++..|+.++.|+.+.
T Consensus 13 ~~~~~~~~~~~Lil~al~~n~~yf~tPsEl~~~ 45 (130)
T pfam03100 13 AALAALGLAVALVLYALRDNIVFFYTPSEVAAG 45 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHCEEEEECHHHHHCC
T ss_conf 999999999999999876181299879998257
No 87
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=31.46 E-value=26 Score=12.99 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999999998649--8640058899999999999999999999717677--8883134786558778852045887799
Q gi|254780473|r 129 ITGIMNFVVPLQIG--ARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA--SVGWLAYPPLSGISYSPGVGVDYYIWGL 204 (671)
Q Consensus 129 ~~G~~n~lvPl~iG--ardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~--~~GWt~YpPLs~~~~spg~g~d~~i~gl 204 (671)
+.++.....|-.+- -++=-+||.++++|-.++++..--..+ -|.-. -.+|+.+--+.. -.-..+.
T Consensus 122 I~alL~ltsp~~l~vlf~EGniP~v~~i~f~pl~l~~l~~~~~--~Gkk~r~~l~~allmslv~---------~tH~m~~ 190 (801)
T COG5617 122 ISALLWLTSPENLKVLFIEGNIPRVLAIGFGPLALGLLERFLE--RGKKERSLLRMALLMSLVL---------LTHPMGG 190 (801)
T ss_pred HHHHHHHHCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHH---------HHHHHHH
T ss_conf 9999998184346887734764187999999999999999998--0735888999999999999---------9888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCCEECCC
Q ss_conf 999999987556899999972368988313315666--8999999999973335788899877------76329801146
Q gi|254780473|r 205 QIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVW--TAFCSNIMIIAAFPILTATLFLLTL------DRYIGTNFFTN 276 (671)
Q Consensus 205 ~l~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W--~~l~tsil~i~a~PvL~~al~ll~l------Dr~~g~~FF~~ 276 (671)
.++|...++-++.-.++--|.|.+ ++.= .-++-.+......|.|.++..-+-. .+.+-+++-+.
T Consensus 191 ~~~g~a~i~~~l~yavl~~kl~~~--------~~~~~~~~~~i~i~~~w~~paL~~~~~~~~~~~~~~~~~~L~~P~~~~ 262 (801)
T COG5617 191 ALSGGALILRLLAYAVLMKKLRNN--------IQSIKTAGLGIGISSFWLYPALKGGLQSMDSLATSEVMKWLSTPFTVA 262 (801)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHEECCCCCCC
T ss_conf 998899999999999988764243--------477776543204558899999735400054022344562115777777
Q ss_pred CCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5432101322---12333401257999987999999998
Q gi|254780473|r 277 HLGGNPMMYI---NLIWIWGHPEVYILVLPAFGIFSEVV 312 (671)
Q Consensus 277 ~~GGdplL~q---~LFW~fGHPeVYIliLPa~Gi~seii 312 (671)
.||..-- |=.|.+| ..+.++-.+|+++++-
T Consensus 263 ---~~p~~~~~~~~~~~~~g---ls~~vvs~lgi~~a~r 295 (801)
T COG5617 263 ---LVPLIRTVLLNGMFYYG---LSVIVVSLLGIIYAIR 295 (801)
T ss_pred ---CCCHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHH
T ss_conf ---76055544027627661---6999999999999986
No 88
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=30.55 E-value=12 Score=15.18 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=6.8
Q ss_pred CCCCCHHHCCHHH
Q ss_conf 6898831331566
Q gi|254780473|r 227 CPGMTMMKMPVFV 239 (671)
Q Consensus 227 apGm~l~rmPlf~ 239 (671)
+...+...+|+.-
T Consensus 169 aS~i~i~glpl~k 181 (732)
T PRK13700 169 DSDIRIGDLPIIR 181 (732)
T ss_pred CCCCEECCCCCCC
T ss_conf 7882467866676
No 89
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=30.33 E-value=27 Score=12.86 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999999999999999-999999876405303002587005799999999999999999999999999974495356
Q gi|254780473|r 462 WGKVSFWCWFVGFYLA-FMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQ 537 (671)
Q Consensus 462 lgk~~Fwl~~iGf~l~-F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~ 537 (671)
.|..+-..-+.|.... ..+....|..= +..+|.....+- ...-.++.++.+.-+....|++||.-
T Consensus 381 ~Gt~~G~~n~~g~lgGai~~~~~~G~l~--------d~~Gw~~~F~~l---~~~~~~a~i~l~~~~~~e~r~~~~~~ 446 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTV--------DFFGWDGGFMVM---IGGSILAVILLIVVMIGEKRHHEELL 446 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899999878999899999898999967--------754778999999---99999999999999977765158886
No 90
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=29.59 E-value=9.7 Score=15.93 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.9
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCEECCC
Q ss_conf 97101269981---199894759607845
Q gi|254780473|r 546 GRTLEWSISSP---SPQYNFAFTPIVSTI 571 (671)
Q Consensus 546 ~~tLEW~~~sP---pp~~nF~~~P~v~~~ 571 (671)
..||||...-- -..||||.+|.|+..
T Consensus 224 ~~Tl~~v~~LnPDRlAvFnyAyvP~vk~~ 252 (462)
T TIGR00538 224 EKTLEKVAELNPDRLAVFNYAYVPWVKPA 252 (462)
T ss_pred HHHHHHHHHCCCCEEHHHHHHHHCCHHHH
T ss_conf 99999985318770012102221015778
No 91
>KOG2766 consensus
Probab=29.49 E-value=21 Score=13.69 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=13.0
Q ss_pred HHHHHHHH---HCC-CCCHHHHHHHHHHHHH
Q ss_conf 99962443---076-7471689999999999
Q gi|254780473|r 446 IVYWFPKA---FGY-QLNSFWGKVSFWCWFV 472 (671)
Q Consensus 446 iyyW~Pk~---~Gr-~l~e~lgk~~Fwl~~i 472 (671)
+|-..|.+ .|- +.|-.+-.--+|-.++
T Consensus 242 lYsl~pil~k~~~aT~~nlslLTsDmwsl~i 272 (336)
T KOG2766 242 LYSLAPILIKTNSATMFNLSLLTSDMWSLLI 272 (336)
T ss_pred HHHHHHHHEECCCCEEEEHHHHHHHHHHHHH
T ss_conf 9986577354377418970676777999999
No 92
>pfam01299 Lamp Lysosome-associated membrane glycoprotein (Lamp).
Probab=27.05 E-value=28 Score=12.84 Aligned_cols=18 Identities=28% Similarity=0.443 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHCCCCCE
Q ss_conf 9999999999983148984
Q gi|254780473|r 627 FISIVFYTIFHTFNYNDGY 645 (671)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~ 645 (671)
++..++.+|+|.-.. .||
T Consensus 285 ~iVliaYlIgRrRs~-~GY 302 (305)
T pfam01299 285 LIVLIAYLIGRRRSH-AGY 302 (305)
T ss_pred HHHHHHEEEEECCCC-CCC
T ss_conf 984342278520467-775
No 93
>COG5346 Predicted membrane protein [Function unknown]
Probab=26.35 E-value=32 Score=12.40 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5899999999999999999999999999999
Q gi|254780473|r 599 ATGIILAALSIVFSFAMVWYMWWLALLSFIS 629 (671)
Q Consensus 599 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 629 (671)
-.+.+......++|+.+||.+|.-...|+.+
T Consensus 85 ~~~~~tril~liFgi~LVvsi~~~tla~~~~ 115 (136)
T COG5346 85 LYAKLTRILLLIFGIFLVVSIFPKTLASLAG 115 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999999998704
No 94
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.85 E-value=30 Score=12.60 Aligned_cols=101 Identities=11% Similarity=0.097 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCCEECCC--CC--HHHHHHCCCCCCCCCCCCCCCC------------------------------C
Q ss_conf 269981199894759607845--50--4775553976776787366189------------------------------9
Q gi|254780473|r 551 WSISSPSPQYNFAFTPIVSTI--DA--WEHMKNRGYRYPSEGFMPIHMP------------------------------S 596 (671)
Q Consensus 551 W~~~sPpp~~nF~~~P~v~~~--d~--~~~~k~~~~~~~~~~~~~ihmP------------------------------~ 596 (671)
|+.+.+=|++.|.+.|++-.. |+ +|.-.++..+..+ +.+++.-| +
T Consensus 446 ~s~~~~lP~Wgf~q~EV~c~~~~~~~T~W~ie~~~n~~l~-~~~~~~~~k~~F~~~fie~n~~M~~~nn~l~~~~~~~S~ 524 (699)
T COG1928 446 ASHDLKLPEWGFSQREVLCAKDRDPSTTWNIEENVNDRLP-NPEKKVYKKLSFWKKFIELNKAMFSSNNALVPDHDYSSE 524 (699)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 3688878775434563676623577630232204476677-653245677517788999889987653035887555456
Q ss_pred CCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH
Q ss_conf 8858999999999999999--------9999999999999999999999831489845567899
Q gi|254780473|r 597 NTATGIILAALSIVFSFAM--------VWYMWWLALLSFISIVFYTIFHTFNYNDGYEVSAKDV 652 (671)
Q Consensus 597 ~t~~~~~~~~~~~~~~f~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (671)
+.-||.......+-....- ---.||.+..+.+...+..+.+......++..-.++.
T Consensus 525 ~~~Wp~l~~glr~~~~~~~~~~~yl~GnP~~wW~~~~~l~~f~~~vi~~l~~w~r~~~~l~~~~ 588 (699)
T COG1928 525 PYQWPTLLRGLRFWGWGECIKKVYLMGNPALWWFSVPALAFFTGIVIWRLIRWRRGYRTLSDPA 588 (699)
T ss_pred CCCCCHHCCCCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 3335200144302135552336998448167788999999999999999986640465545511
No 95
>pfam12072 DUF3552 Domain of unknown function (DUF3552). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important.
Probab=25.43 E-value=33 Score=12.29 Aligned_cols=19 Identities=42% Similarity=0.707 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254780473|r 72 IILSLVMLFRGFADAIMMR 90 (671)
Q Consensus 72 iv~a~~~ll~Gg~~allmR 90 (671)
++.+++.+++|++.|.++|
T Consensus 3 Ii~~i~~~~iG~~~G~~~~ 21 (201)
T pfam12072 3 IILAIIALVVGFAIGYFVR 21 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 3999999999999999999
No 96
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.00 E-value=34 Score=12.24 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=16.2
Q ss_pred HHHHHHHHHHCCCCCEECH---HHHHHHHHHHH
Q ss_conf 9999878742587302243---79999999999
Q gi|254780473|r 371 AKIFNWLFTMRLGKVRFEV---PMMWTLGFMIT 400 (671)
Q Consensus 371 vkiFnwl~Tl~~G~ir~~~---pml~~lgfi~~ 400 (671)
.-+..|+..+.+|++.|-. -..|.++|..-
T Consensus 318 ~~ve~~l~~lpgg~igFli~~~~~iF~Lgffld 350 (447)
T COG4664 318 AWVEHLLTNLPGGEIGFLIVSNILIFFLGFFLD 350 (447)
T ss_pred HHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHH
T ss_conf 899999960999843420399999999999999
No 97
>PRK10050 curli assembly protein CsgF; Provisional
Probab=24.55 E-value=35 Score=12.18 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=5.2
Q ss_pred CCCCCCCHHHHH
Q ss_conf 465432101322
Q gi|254780473|r 275 TNHLGGNPMMYI 286 (671)
Q Consensus 275 ~~~~GGdplL~q 286 (671)
+|..||||+-++
T Consensus 28 nP~FGG~~~N~~ 39 (138)
T PRK10050 28 NPNFGGNPNNGA 39 (138)
T ss_pred CCCCCCCCCCHH
T ss_conf 888789866488
No 98
>TIGR01946 rnfD electron transport complex, RnfABCDGE type, D subunit; InterPro: IPR011303 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the D subunit.; GO: 0006118 electron transport, 0016021 integral to membrane.
Probab=24.38 E-value=35 Score=12.16 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852045887799--99999998755689999997236--898831331566689999999999733357
Q gi|254780473|r 193 PGVGVDYYIWGL--QIAGIGTTLSGINLVVTIIKMRC--PGMTMMKMPVFVWTAFCSNIMIIAAFPILT 257 (671)
Q Consensus 193 pg~g~d~~i~gl--~l~gigsll~~iNfi~TI~~~Ra--pGm~l~rmPlf~W~~l~tsil~i~a~PvL~ 257 (671)
|+.-+..|..|. .+...-+.+.|+-.=.-+.|.|. |.-++.+- |..+|++|+.++.|+++
T Consensus 23 Pg~~~~~y~FG~GtLi~~a~a~~~a~~~E~~~~Klrk~~~~~~l~D~-----Sa~lTg~LLAv~iPp~~ 86 (346)
T TIGR01946 23 PGLAAQVYFFGWGTLIQIALAILVALILEALILKLRKRSPKNTLKDG-----SAILTGLLLAVAIPPLA 86 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCH-----HHHHHHHHHHHHHHHHH
T ss_conf 99999998877999999999999999999999998688911342533-----79999999999753310
No 99
>PRK10847 hypothetical protein; Provisional
Probab=23.93 E-value=35 Score=12.11 Aligned_cols=49 Identities=22% Similarity=0.402 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCC---------CH-HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 9996244307674---------71-689999999-----------99999999999999876405303002
Q gi|254780473|r 446 IVYWFPKAFGYQL---------NS-FWGKVSFWC-----------WFVGFYLAFMPLYALGLKGVTRRLSQ 495 (671)
Q Consensus 446 iyyW~Pk~~Gr~l---------~e-~lgk~~Fwl-----------~~iGf~l~F~pm~~lGl~GmpRR~~~ 495 (671)
+-||.-+-.|+++ ++ ++.|.+-++ -|+...=++.|+ .+|..+||.|-+.
T Consensus 88 ~~Y~iGr~~G~~l~~~~~~r~~~~~~l~ka~~ff~kyG~~av~~gRFiP~vRt~vp~-~AG~~~M~~~rF~ 157 (219)
T PRK10847 88 VNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPF-VAGMGHMSYRHFA 157 (219)
T ss_pred HHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH-HHHCCCCCHHHHH
T ss_conf 999999995806751566432568999999999997698078840012277867548-7560589889999
No 100
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=23.91 E-value=35 Score=12.10 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH
Q ss_conf 9999999999999999831489845567899999999
Q gi|254780473|r 622 LALLSFISIVFYTIFHTFNYNDGYEVSAKDVAFSEEV 658 (671)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 658 (671)
++++++++....++...++.+.+|+-.++|+.+.+..
T Consensus 13 l~~~a~l~~a~~l~Lyal~~ni~~fy~Psel~~~~~~ 49 (153)
T COG2332 13 LAGLAGLALAVGLVLYALRSNIDYFYTPSELLEGKVE 49 (153)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCCCC
T ss_conf 9999999999999876420375089877996256456
No 101
>pfam10643 Cytochrome-c551 Photosystem P840 reaction-centre cytochrome c-551. A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidized P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group.
Probab=23.83 E-value=36 Score=12.09 Aligned_cols=58 Identities=28% Similarity=0.513 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf 9999999999999996244307674-716----89-99999999999999999999876405303002
Q gi|254780473|r 434 IIGGVVFGLFAGIVYWFPKAFGYQL-NSF----WG-KVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQ 495 (671)
Q Consensus 434 l~gg~vf~~fagiyyW~Pk~~Gr~l-~e~----lg-k~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~ 495 (671)
-+||++ +++++.|-.--+||.+. -|. +. ..+|--||.=..+ -.+-+-|+--|..|+.+
T Consensus 13 AiGGAv--lmgaLFfgvSflTGyk~pAeniS~~ltPL~Sf~GWflLif~--ASliimglGkMS~~ISd 76 (213)
T pfam10643 13 AIGGAV--LMGALFFGVSFLTGYKVPAENISPVLTPLRSFMGWFLLIFC--ASLIIMGLGKMSSRISD 76 (213)
T ss_pred HHHHHH--HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC
T ss_conf 351599--99999999999844878755431666458889999999999--99999988776535404
No 102
>PRK13681 hypothetical protein; Provisional
Probab=23.75 E-value=31 Score=12.46 Aligned_cols=18 Identities=39% Similarity=0.576 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 999988755653034321
Q gi|254780473|r 399 ITFLIGGMTGVLLAVPPA 416 (671)
Q Consensus 399 ~~F~iGG~tGv~lA~~~~ 416 (671)
.+-.|||+.|||+|-.++
T Consensus 13 ~LMAIgGIgGVMLaGYtf 30 (35)
T PRK13681 13 LLMAIGGIGGVMLAGYTF 30 (35)
T ss_pred HHHHHCCCCEEEEECEEE
T ss_conf 999967724488603499
No 103
>pfam09904 DUF2131 Uncharacterized protein conserved in bacteria (DUF2131). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.38 E-value=29 Score=12.70 Aligned_cols=12 Identities=42% Similarity=0.731 Sum_probs=8.2
Q ss_pred HHHHCCCHHHCC
Q ss_conf 876405303002
Q gi|254780473|r 484 LGLKGVTRRLSQ 495 (671)
Q Consensus 484 lGl~GmpRR~~~ 495 (671)
--+-|||||...
T Consensus 5 ~~~TGmPRRT~Q 16 (67)
T pfam09904 5 MELTGMPRRTAQ 16 (67)
T ss_pred HHHHCCCHHHHH
T ss_conf 653189733789
No 104
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases; InterPro: IPR013370 This family consists of muconate cycloisomerase (5.5.1.1 from EC) and chloromuconate cycloisomerase (5.5.1.7 from EC), enzymes that often overlap in specificity. It does not include more distantly related proteins such as mandelate racemase (5.1.2.2 from EC).; GO: 0018849 muconate cycloisomerase activity, 0018850 chloromuconate cycloisomerase activity, 0030145 manganese ion binding.
Probab=21.67 E-value=33 Score=12.31 Aligned_cols=202 Identities=20% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEH----------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 87425873022437999999999999887556530343211121274220----------44789999999999999999
Q gi|254780473|r 377 LFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFL----------VAHFHNTIIGGVVFGLFAGI 446 (671)
Q Consensus 377 l~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fV----------VAHFHyvl~gg~vf~~fagi 446 (671)
+-+|.+|++|=+.|++|+|+...+=-. |=-|-.-+.--.|+|.=+ |+|.- -+-- ++
T Consensus 120 V~eLLGG~~Rd~vdV~WtLasgdtd~d-----I~EAe~~~E~~rh~~FKLKiG~~~~a~DV~hV~--~I~~-------AL 185 (369)
T TIGR02534 120 VSELLGGAVRDSVDVLWTLASGDTDRD-----IEEAEELLEEKRHRSFKLKIGARDLADDVAHVV--AIKK-------AL 185 (369)
T ss_pred HHHHCCCCEECCCCHHHHHCCCCHHHH-----HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH--HHHH-------HH
T ss_conf 344278741144540242115753478-----999999999726882154437888657799999--9999-------72
Q ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHHHHH-----HHHHHHH---HHHHHHCCCHHHCCC--CC-CHH---HHHHHHHHHH
Q ss_conf 99624430767-47168999999999999-----9999999---998764053030025--87-005---7999999999
Q gi|254780473|r 447 VYWFPKAFGYQ-LNSFWGKVSFWCWFVGF-----YLAFMPL---YALGLKGVTRRLSQY--ED-TTL---QVYYVVALLG 511 (671)
Q Consensus 447 yyW~Pk~~Gr~-l~e~lgk~~Fwl~~iGf-----~l~F~pm---~~lGl~GmpRR~~~y--~~-~~~---~~~n~istiG 511 (671)
-++..=|- .|.+|.+.......--+ -|.==|- -..+|.-.+||...- .| .-+ +-+.+++.-+
T Consensus 186 ---g~r~~VRVDVN~aW~e~~A~~~~~~LadaGv~LIEQPtpae~~~~LarLt~r~~VpIMADE~v~gP~dAl~~a~~~a 262 (369)
T TIGR02534 186 ---GDRASVRVDVNAAWDELEALKYLPQLADAGVELIEQPTPAEQREALARLTRRFNVPIMADESVTGPADALEIAKASA 262 (369)
T ss_pred ---CCCEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHC
T ss_conf ---99528997203667878999998888850700004889620489999998433885430445688278999999825
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHH---HHHCCCC
Q ss_conf 999999-----99999999999974495356899989999710126998119989475960784550477---5553976
Q gi|254780473|r 512 AVLIGI-----GVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTIDAWEH---MKNRGYR 583 (671)
Q Consensus 512 a~l~~~-----g~l~f~~nl~~S~~~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~d~~~~---~k~~~~~ 583 (671)
|=++++ |-+.=.-++.-=. ++. .=+-.+|+.||=..-|=.-.|-|+..|.++-=.++.- .|+.=..
T Consensus 263 ADVfAlK~~ksGGL~~~~~~AAIA----~AA--Gi~lyGgTmLEGpiGtiASah~f~~~~~l~~GTELFGPLLL~~~il~ 336 (369)
T TIGR02534 263 ADVFALKIAKSGGLLESKKVAAIA----KAA--GIALYGGTMLEGPIGTIASAHFFAAFPELEFGTELFGPLLLKDEILT 336 (369)
T ss_pred CCEEEEEHHCCCCHHHHHHHHHHH----HHC--CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf 977874000144157899999999----764--83101650031026899999998413566646412463111336535
Q ss_pred CCCCCCC--CCCCCCCCHHHH
Q ss_conf 7767873--661899885899
Q gi|254780473|r 584 YPSEGFM--PIHMPSNTATGI 602 (671)
Q Consensus 584 ~~~~~~~--~ihmP~~t~~~~ 602 (671)
.+- .|+ ..|+|+-=+.|+
T Consensus 337 ~~l-~Y~~f~LhlP~GPGLG~ 356 (369)
T TIGR02534 337 EPL-QYEDFQLHLPAGPGLGV 356 (369)
T ss_pred CCC-CCCCCEEECCCCCCCCE
T ss_conf 787-54576465247878950
No 105
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=21.59 E-value=39 Score=11.80 Aligned_cols=122 Identities=19% Similarity=0.270 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHC-----CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCC
Q ss_conf 8877999999999875568999999-723-----689883133156668999999999973335788899877--76329
Q gi|254780473|r 199 YYIWGLQIAGIGTTLSGINLVVTII-KMR-----CPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTL--DRYIG 270 (671)
Q Consensus 199 ~~i~gl~l~gigsll~~iNfi~TI~-~~R-----apGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~l--Dr~~g 270 (671)
..++|.....++...+..-.+..-. |.+ .-+....|+|-------..--.+...+|.++.+++.-.. |..+|
T Consensus 99 ~~~lsYa~f~la~~~s~~yLl~~~~lk~k~~~~~~~~~~~~rlp~l~~ld~l~~~~~~~Gf~~lt~gli~G~iWa~~~wG 178 (243)
T TIGR03144 99 VMILSYAALLVGSLLSIAYLLKTRKQNLEYRTSRFLGANSRRLPLLETLDNLSYRTIAIGFPLLTIGIISGAVWANEAWG 178 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998999999999999999999876431100014677887588589999999999999999999999999999999855
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 801146543210132212333401257999987999999998531056402668999999999999753
Q gi|254780473|r 271 TNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYT 339 (671)
Q Consensus 271 ~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~ 339 (671)
-+|.|.+-|+--++ ..-+..-++-.-..+...|.+...++.++..++-+.
T Consensus 179 -----------------~~w~wDpKe~~sli--~wl~Y~~~lh~R~~~g~~g~~~a~~~i~gf~~~l~~ 228 (243)
T TIGR03144 179 -----------------SYWSWDPKETWALI--TWLIYAAYLHARLTKGWRGKKAAWLASIGFFVVWFC 228 (243)
T ss_pred -----------------CCCCCCHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -----------------35456708999999--999999999999816766269999999999999999
No 106
>pfam03839 Sec62 Translocation protein Sec62.
Probab=21.45 E-value=40 Score=11.78 Aligned_cols=20 Identities=5% Similarity=0.139 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 98858999999999999999
Q gi|254780473|r 596 SNTATGIILAALSIVFSFAM 615 (671)
Q Consensus 596 ~~t~~~~~~~~~~~~~~f~~ 615 (671)
.++++-.+++++..+..++.
T Consensus 100 ~~~~~~~l~~~~~v~~v~a~ 119 (217)
T pfam03839 100 PVPLMTYLIGVIGVLGIIAL 119 (217)
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 87399999999999999999
No 107
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV; InterPro: IPR014210 This entry represents subunit 4 (CyoD) of cytochrome o terminal oxidase complex, which is a component of the aerobic respiratory chain that reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilise cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant..
Probab=21.19 E-value=40 Score=11.75 Aligned_cols=16 Identities=0% Similarity=0.119 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6899999999999975
Q gi|254780473|r 323 YNSMVYATLAITILSY 338 (671)
Q Consensus 323 y~~~v~A~~~i~~lsf 338 (671)
.+....+....++...
T Consensus 34 ~~~~~~~i~~~A~~Qi 49 (99)
T TIGR02847 34 KGLTLVIIIVLAVVQI 49 (99)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8899999999999999
No 108
>pfam06472 ABC_membrane_2 ABC transporter transmembrane region 2. This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human PMP70 (70 kDa peroxisomal membrane protein) are believed responsible for Zellweger Syndrome-2; mutations in human ALDP (Adrenoleukodystrophy protein) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids.
Probab=20.98 E-value=40 Score=11.72 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=6.5
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 00014799999999999
Q gi|254780473|r 60 TSVDHKKIGIMYIILSL 76 (671)
Q Consensus 60 tt~dHK~IGi~Yiv~a~ 76 (671)
.+...|..|.+-++..+
T Consensus 20 p~~~~~~~~ll~~l~~l 36 (282)
T pfam06472 20 PRWFSKEAGLLLALAAL 36 (282)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 88667999999999999
No 109
>pfam05940 NnrS NnrS protein. This family consists of several bacterial NnrS like proteins. NnrS is a putative heme-Cu protein (NnrS) and a member of the short-chain dehydrogenase family. Expression of nnrS is dependent on the transcriptional regulator NnrR, which also regulates expression of genes required for the reduction of nitrite to nitrous oxide, including nirK and nor. NnrS is a haem- and copper-containing membrane protein. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase.
Probab=20.96 E-value=40 Score=11.72 Aligned_cols=290 Identities=20% Similarity=0.182 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999999999999986498640058899999999999999999999717677888313478655877
Q gi|254780473|r 112 IFTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISY 191 (671)
Q Consensus 112 ~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~ 191 (671)
-..-|+--|+|.+...++.||.-=-+|.=.|.+...=.++-.+ +-++..|-+....+ +.. .
T Consensus 43 ~~~WHahEMlfGf~~a~iaGFLlTAvp~WTg~~~~~g~~L~~l-~~lWl~gR~a~~~~----~~~-~------------- 103 (379)
T pfam05940 43 PLWWHAHEMLFGFAGAIVAGFLLTAVPNWTGRPPIRGRPLAAL-VALWLAGRLAFLLG----GLL-P------------- 103 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHH----HHH-H-------------
T ss_conf 7889999999999999999999852532159999985479999-99999999999982----003-7-------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88520458877999999999875568999999723689883133156668999999999973335788899877763298
Q gi|254780473|r 192 SPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGT 271 (671)
Q Consensus 192 spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~ 271 (671)
.+. +..+...-....++.+...+++.|.. .+.+ |.... -.++.+......+.
T Consensus 104 -------~~l-a~~~d~~f~~~l~~~~~~~l~~~~~~----rn~~-~~~~l-----------~~l~~~~~~~~~~~---- 155 (379)
T pfam05940 104 -------LWL-AALLDLAFLPALAALLAREIIRARNW----RNLF-FVPLL-----------LLLGLANLLFHLAL---- 155 (379)
T ss_pred -------HHH-HHHHHHHHHHHHHHHHHHHHHHCCCC----CCCH-HHHHH-----------HHHHHHHHHHHHHH----
T ss_conf -------999-99999999999999999999865674----5222-99999-----------99999999999998----
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 01146543210132212333401257999987999999998531056402668-----9999999999997533221022
Q gi|254780473|r 272 NFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYN-----SMVYATLAITILSYTVWLHHFF 346 (671)
Q Consensus 272 ~FF~~~~GGdplL~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~-----~~v~A~~~i~~lsf~VW~HHmF 346 (671)
.++++..- ..--+-.++...+....+-.-++|-|+++.+-.++ ..-.+......+....+..
T Consensus 156 ------~~~~~~~~----~~~~~~~~~~~~~li~~vggRviP~Ft~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (379)
T pfam05940 156 ------LGGDLALA----LHGLRLGLLLVALLISLIGGRVIPFFTRNWLPGAKPRPFPWLDRLALAALLLALLAWLL--- 222 (379)
T ss_pred ------HCCCCHHH----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH---
T ss_conf ------73883479----99999999999999999973111898876624478899638999999999999999997---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEH
Q ss_conf 47875889987653346788987799998787425873022437999999999999887556530343211121274220
Q gi|254780473|r 347 TMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFL 426 (671)
Q Consensus 347 t~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fV 426 (671)
+.+ ...+-..++.+++- .-+-..-|++....+.|.+|.+-....++.-|.- ..+....+.... -
T Consensus 223 --~~~-------~~~~~~l~l~a~~~-~~~rl~~W~~~~~~~~pllw~Lhl~y~wl~~G~~--l~g~~~l~~~~~----~ 286 (379)
T pfam05940 223 --GPP-------SALTGALALAAGAL-HLVRLARWRGWRTLRVPLLWSLHLAYLWLPLGLL--LLGLAALGLVLP----G 286 (379)
T ss_pred --CCH-------HHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCC----C
T ss_conf --531-------58999999999999-9999851454326561699999999999999999--999998735331----0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 44789999999999999999996244307674-7168999999999999999
Q gi|254780473|r 427 VAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFVGFYLA 477 (671)
Q Consensus 427 VAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~ 477 (671)
.+=.|-..+|+....+++-+.=--=.=+||.+ ..|.....|.+......+=
T Consensus 287 ~~~lH~ltvG~~g~~ilammtRvslgHtGR~l~~~~~~~~a~~li~~aal~R 338 (379)
T pfam05940 287 SAALHALTVGAIGGMILAMMTRVSLGHTGRPLVAGRLMVLAFALLLLAALLR 338 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6999999998999999999999997137998898768999999999999999
No 110
>pfam04483 DUF565 Protein of unknown function (DUF565). Predicted transmembrane protein found in plants, chloroplasts and cyanobacteria. This family is also known as YCF20.
Probab=20.71 E-value=41 Score=11.68 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999999999999750633234430300001479999999999
Q gi|254780473|r 31 FFVVALVGVSIIFAITYYRLWGYLWKEWFTSVDHKKIGIMYIILS 75 (671)
Q Consensus 31 ~~~~~~~~~~~~~~~t~~~~w~~lw~~wltt~dHK~IGi~Yiv~a 75 (671)
.+++++...-++..+.|-+..+.--+-|+...|-=|||+.|-..-
T Consensus 9 ~A~i~v~~~E~is~l~Y~~~~~~~~~~~~~~lN~~KiG~~YgLFl 53 (60)
T pfam04483 9 AAAILVAITEIISKLFYSRPSKKRRSLILELLNLFKIGLIYGLFV 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999945644320417999999999999999999
No 111
>PRK09609 hypothetical protein; Provisional
Probab=20.53 E-value=41 Score=11.66 Aligned_cols=92 Identities=21% Similarity=0.318 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHH
Q ss_conf 46788987799998787----42587302243799999999999988755653034321112127422044789999999
Q gi|254780473|r 362 TMVIAVPTGAKIFNWLF----TMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGG 437 (671)
Q Consensus 362 Tm~IaIPTgvkiFnwl~----Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg 437 (671)
.|+||+-..+.+..-.. ...+-|+.+..-+.=.-|+++.=.+|+++|.+--..+.-.. -++ =|+||++. +
T Consensus 13 ailIaisV~~~~i~~~~~p~~~~p~~rv~f~glpIkItG~iFGPivG~~~G~~~Dli~~~~~--p~~---~~~~ytl~-a 86 (308)
T PRK09609 13 AILIAISVAFLIIGVRLAPFRALPGYKISFIGLPIKITGLIFGPIIGIFIGLLTDLISFLMI--PGV---YHYYYTLA-A 86 (308)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHC--CCC---HHHHHHHH-H
T ss_conf 99999999999999997020236861789730271013336404899999999999998416--550---10899999-9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999962443076747
Q gi|254780473|r 438 VVFGLFAGIVYWFPKAFGYQLN 459 (671)
Q Consensus 438 ~vf~~fagiyyW~Pk~~Gr~l~ 459 (671)
.+.|..+|+.-|+=+-+++.+.
T Consensus 87 ~~~G~i~Glv~~~F~k~~k~~f 108 (308)
T PRK09609 87 MAYGFIPGLVAWFFFKFGKYAF 108 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9940078899999999765662
Done!