HHsearch alignment for GI: 254780473 and conserved domain: pfam00115

>pfam00115 COX1 Cytochrome C and Quinol oxidase polypeptide I.
Probab=97.86  E-value=0.0025  Score=40.34  Aligned_cols=236  Identities=16%  Similarity=0.240  Sum_probs=122.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHH------HHHHHHH---HHCCCC
Q ss_conf             21013221233340125799998799-99999985310564-0266899999999999------9753322---102247
Q gi|254780473|r  280 GNPMMYINLIWIWGHPEVYILVLPAF-GIFSEVVATFSGKR-LFGYNSMVYATLAITI------LSYTVWL---HHFFTM  348 (671)
Q Consensus       280 GdplL~q~LFW~fGHPeVYIliLPa~-Gi~seiip~fs~kp-lfgy~~~v~A~~~i~~------lsf~VW~---HHmFt~  348 (671)
T Consensus        37 ~~~~~y~~~~t~Hg~~mif~~~~~~~~g~~~ylvp~~~g~~dl~~prl~~~~fwl~~~g~~l~~~s~~~g~~~~~~~wt~  116 (444)
T pfam00115        37 SPDATYNQLRTLHGNLMIFWWAMPALIGLGNYLVPLMLGARDLAFPRLNALSFWLLVVGGLLALVSLLLGGGAPGRGWTE  116 (444)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf             88667898999999999999999999999999999990997444568999999999999999999873077888888010


Q ss_pred             CCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE---EC-HHH-HHHH---HHHHHHHHHHHHHHHCCCC
Q ss_conf             875889------98765334678898779999878742587302---24-379-9999---9999999887556530343
Q gi|254780473|r  349 GSGANV------NAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVR---FE-VPM-MWTL---GFMITFLIGGMTGVLLAVP  414 (671)
Q Consensus       349 G~~~~~------~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir---~~-~pm-l~~l---gfi~~F~iGG~tGv~lA~~  414 (671)
T Consensus       117 -ypPLs~~~~~~~~~~~~~l~l~~v~~ll~~in~i~Ti~~~r~~g~~~~~~pl~~w~~~~t~il~~~~~p~l~~~~~~~-  194 (444)
T pfam00115       117 -YPPLSSTSSSPVDLWILGLLLVGIGSLLGAINFIVTILKRRAPGMTLSRMPLFVWSLLATAILILFAFPVLAVALLML-  194 (444)
T ss_pred             -CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             -677433556662899999999999999999999999997176788732333999999999999999988778888888-


Q ss_pred             CCCEEE------------CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             211121------------27422044789999999999999999996244307674-71689999999999999999999
Q gi|254780473|r  415 PADFTL------------HNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPL  481 (671)
Q Consensus       415 ~~D~~l------------HnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm  481 (671)
T Consensus       195 ~~~~~~~~~~~~~~~~l~~~lfW~fgHp~--V-y~~~~pa~g~~y~iip~~~~~~~~s~~~~~~a~~~i~~~~~~v-~~H  270 (444)
T pfam00115       195 LLDRNFGTSFFGGDPLLYQHLFWFFGHPE--V-YILILPAFGIVSYILPKFSGKPLFGYKWMVLAFWAIALLSFLV-WGH  270 (444)
T ss_pred             HHHHHCCCCEECCCCHHHHHHHHHHCCCH--H-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CHH
T ss_conf             76521460114787099999999844871--4-7789989999999988851787403889999999999985001-120


Q ss_pred             HHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9987640530300258700579999999999999999999999999997449
Q gi|254780473|r  482 YALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR  533 (671)
Q Consensus       482 ~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~  533 (671)
T Consensus       271 Hl~~-~g~p-----------~~~~~~~~~~t~~i~iP~~~~~~~~~~t~~~~  310 (444)
T pfam00115       271 HMFT-SGLP-----------PWWRAFFSVFSMLIAIPTGLKVFNWLATLWGG  310 (444)
T ss_pred             HEEC-CCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             1015-7897-----------89999999999999988999999999886157