HHsearch alignment for GI: 254780473 and conserved domain: pfam00115
>pfam00115 COX1 Cytochrome C and Quinol oxidase polypeptide I.
Probab=97.86 E-value=0.0025 Score=40.34 Aligned_cols=236 Identities=16% Similarity=0.240 Sum_probs=122.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHH------HHHHHHH---HHCCCC
Q ss_conf 21013221233340125799998799-99999985310564-0266899999999999------9753322---102247
Q gi|254780473|r 280 GNPMMYINLIWIWGHPEVYILVLPAF-GIFSEVVATFSGKR-LFGYNSMVYATLAITI------LSYTVWL---HHFFTM 348 (671)
Q Consensus 280 GdplL~q~LFW~fGHPeVYIliLPa~-Gi~seiip~fs~kp-lfgy~~~v~A~~~i~~------lsf~VW~---HHmFt~ 348 (671)
T Consensus 37 ~~~~~y~~~~t~Hg~~mif~~~~~~~~g~~~ylvp~~~g~~dl~~prl~~~~fwl~~~g~~l~~~s~~~g~~~~~~~wt~ 116 (444)
T pfam00115 37 SPDATYNQLRTLHGNLMIFWWAMPALIGLGNYLVPLMLGARDLAFPRLNALSFWLLVVGGLLALVSLLLGGGAPGRGWTE 116 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 88667898999999999999999999999999999990997444568999999999999999999873077888888010
Q ss_pred CCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE---EC-HHH-HHHH---HHHHHHHHHHHHHHHCCCC
Q ss_conf 875889------98765334678898779999878742587302---24-379-9999---9999999887556530343
Q gi|254780473|r 349 GSGANV------NAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVR---FE-VPM-MWTL---GFMITFLIGGMTGVLLAVP 414 (671)
Q Consensus 349 G~~~~~------~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir---~~-~pm-l~~l---gfi~~F~iGG~tGv~lA~~ 414 (671)
T Consensus 117 -ypPLs~~~~~~~~~~~~~l~l~~v~~ll~~in~i~Ti~~~r~~g~~~~~~pl~~w~~~~t~il~~~~~p~l~~~~~~~- 194 (444)
T pfam00115 117 -YPPLSSTSSSPVDLWILGLLLVGIGSLLGAINFIVTILKRRAPGMTLSRMPLFVWSLLATAILILFAFPVLAVALLML- 194 (444)
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf -677433556662899999999999999999999999997176788732333999999999999999988778888888-
Q ss_pred CCCEEE------------CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 211121------------27422044789999999999999999996244307674-71689999999999999999999
Q gi|254780473|r 415 PADFTL------------HNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPL 481 (671)
Q Consensus 415 ~~D~~l------------HnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm 481 (671)
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~lfW~fgHp~--V-y~~~~pa~g~~y~iip~~~~~~~~s~~~~~~a~~~i~~~~~~v-~~H 270 (444)
T pfam00115 195 LLDRNFGTSFFGGDPLLYQHLFWFFGHPE--V-YILILPAFGIVSYILPKFSGKPLFGYKWMVLAFWAIALLSFLV-WGH 270 (444)
T ss_pred HHHHHCCCCEECCCCHHHHHHHHHHCCCH--H-HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CHH
T ss_conf 76521460114787099999999844871--4-7789989999999988851787403889999999999985001-120
Q ss_pred HHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9987640530300258700579999999999999999999999999997449
Q gi|254780473|r 482 YALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533 (671)
Q Consensus 482 ~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~ 533 (671)
T Consensus 271 Hl~~-~g~p-----------~~~~~~~~~~t~~i~iP~~~~~~~~~~t~~~~ 310 (444)
T pfam00115 271 HMFT-SGLP-----------PWWRAFFSVFSMLIAIPTGLKVFNWLATLWGG 310 (444)
T ss_pred HEEC-CCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1015-7897-----------89999999999999988999999999886157