HHsearch alignment for GI: 254780473 and conserved domain: pfam12270
>pfam12270 Cyt_c_ox_IV Cytochrome c oxidase subunit IV. This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex.
Probab=97.59 E-value=0.0006 Score=44.56 Aligned_cols=54 Identities=17% Similarity=0.344 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 1899885899999999999999999999999999999999999998314898455
Q gi|254780473|r 593 HMPSNTATGIILAALSIVFSFAMVWYMWWLALLSFISIVFYTIFHTFNYNDGYEV 647 (671)
Q Consensus 593 hmP~~t~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (671)
T Consensus 81 FFSP~SwWPl~~a~~~a~~~lGla~g-~WL~~ig~~~~~~~~~G~vfEY~rg~~a 134 (135)
T pfam12270 81 FFSPWSWWPLALALSVAIAALGLAFG-WWLVAIGAVLLIIALVGLVFEYYRGPEA 134 (135)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 53873088999999999999999999-9999999999999999885030467668