HHsearch results for GI: 254780473 and protein with PDBid: 1xme_A
>1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.24.1.1 PDB: 2qpe_A* 2qpd_A* 3bvd_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A*
Probab=98.08 E-value=0.00027 Score=45.43 Aligned_cols=181 Identities=17% Similarity=0.265 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 68789899999999999999999999999999999864986400588999999999999999999997176778883134
Q gi|254780473|r 104 LDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAY 183 (671)
Q Consensus 104 l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~Y 183 (671)
.+|..|..+|=--|---+.+...| ..|...+++|...| |++-.-|+..++||+..+ .|..++. +
T Consensus 225 gdplL~q~LFWffGHp~Vyi~ilP-a~g~~y~iip~~sg-kplfs~~~~~~af~~~~~------l~~~v~~--H------ 288 (568)
T 1xme_A 225 VDPLVARTLFWWTGHPIVYFWLLP-AYAIIYTILPKQAG-GKLVSDPMARLAFLLFLL------LSTPVGF--H------ 288 (568)
T ss_dssp ECHHHHHHHHHHHHTHHHHHHHHH-HHHHHHHTHHHHHT-SCBSCHHHHHHHHHHHHH------HSSTTGG--G------
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHEEHHHCC-CCEEECCHHHHHHHHHHH------HHEEECC--C------
T ss_conf 558788888987176499999999-99999993011038-962102057777887876------2102313--0------
Q ss_pred CCCCCCCC-CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC-CCCHHHCCHHHHHH--------HHHHHHH
Q ss_conf 78655877-8852045---887799999999987556899999972-368-98831331566689--------9999999
Q gi|254780473|r 184 PPLSGISY-SPGVGVD---YYIWGLQIAGIGTTLSGINLVVTIIKM-RCP-GMTMMKMPVFVWTA--------FCSNIMI 249 (671)
Q Consensus 184 pPLs~~~~-spg~g~d---~~i~gl~l~gigsll~~iNfi~TI~~~-Rap-Gm~l~rmPlf~W~~--------l~tsil~ 249 (671)
+.+ +||...+ +....-.+..+-|.+...|...|.... |.. |. .+|.|-. +...++-
T Consensus 289 -----Hmf~~~g~~~~~~~~~~~~T~~i~iPs~~~~f~~~~tl~~~~~~~~g~-----~if~W~~tl~~~~~~~~~~~l~ 358 (568)
T 1xme_A 289 -----HQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGR-----GLFGWIRALPWDNPAFVAPVLG 358 (568)
T ss_dssp -----GCTTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----STTHHHHHSCTTCHHHHHHHHH
T ss_pred -----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----EEEEHHHHHCCCCHHHHHHHHH
T ss_conf -----112677877689999999999999999999999999987502236785-----2453777763898578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99733357888998777632980114654321013221233340125799---998799999999853105640266
Q gi|254780473|r 250 IAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYI---LVLPAFGIFSEVVATFSGKRLFGY 323 (671)
Q Consensus 250 i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYI---liLPa~Gi~seiip~fs~kplfgy 323 (671)
++.+-+-..+-.++ ....-|. ...|=.|.=||=...+ .++-.+|.+|...|+..||++.+.
T Consensus 359 ~~~f~~gG~tGv~~------------a~~~in~-~~H~T~~VvaHfH~~l~g~~~~~~~g~~y~~~P~ltGr~l~~~ 422 (568)
T 1xme_A 359 LLGFIPGGAGGIVN------------ASFTLDY-VVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDA 422 (568)
T ss_dssp HHHHHHHHHHHHHH------------TSGGGHH-HHTTBTHHHHHHHHHTTTHHHHHHHHTHHHHHHHHHCCCCCHH
T ss_pred HHHHHHHCCCHHHH------------CCCCCCH-HHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999625205654------------4551259-8808856766520218999999999999999999968820178