HHsearch results for GI: 254780473 and protein with PDBid: 1xme_A

>1xme_A Cytochrome C oxidase polypeptide I; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: f.24.1.1 PDB: 2qpe_A* 2qpd_A* 3bvd_A* 1ehk_A* 3eh5_A* 3eh3_A* 3eh4_A*
Probab=98.08  E-value=0.00027  Score=45.43  Aligned_cols=181  Identities=17%  Similarity=0.265  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             68789899999999999999999999999999999864986400588999999999999999999997176778883134
Q gi|254780473|r  104 LDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAY  183 (671)
Q Consensus       104 l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~Y  183 (671)
                      .+|..|..+|=--|---+.+...| ..|...+++|...| |++-.-|+..++||+..+      .|..++.  +      
T Consensus       225 gdplL~q~LFWffGHp~Vyi~ilP-a~g~~y~iip~~sg-kplfs~~~~~~af~~~~~------l~~~v~~--H------  288 (568)
T 1xme_A          225 VDPLVARTLFWWTGHPIVYFWLLP-AYAIIYTILPKQAG-GKLVSDPMARLAFLLFLL------LSTPVGF--H------  288 (568)
T ss_dssp             ECHHHHHHHHHHHHTHHHHHHHHH-HHHHHHHTHHHHHT-SCBSCHHHHHHHHHHHHH------HSSTTGG--G------
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHEEHHHCC-CCEEECCHHHHHHHHHHH------HHEEECC--C------
T ss_conf             558788888987176499999999-99999993011038-962102057777887876------2102313--0------


Q ss_pred             CCCCCCCC-CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC-CCCHHHCCHHHHHH--------HHHHHHH
Q ss_conf             78655877-8852045---887799999999987556899999972-368-98831331566689--------9999999
Q gi|254780473|r  184 PPLSGISY-SPGVGVD---YYIWGLQIAGIGTTLSGINLVVTIIKM-RCP-GMTMMKMPVFVWTA--------FCSNIMI  249 (671)
Q Consensus       184 pPLs~~~~-spg~g~d---~~i~gl~l~gigsll~~iNfi~TI~~~-Rap-Gm~l~rmPlf~W~~--------l~tsil~  249 (671)
                           +.+ +||...+   +....-.+..+-|.+...|...|.... |.. |.     .+|.|-.        +...++-
T Consensus       289 -----Hmf~~~g~~~~~~~~~~~~T~~i~iPs~~~~f~~~~tl~~~~~~~~g~-----~if~W~~tl~~~~~~~~~~~l~  358 (568)
T 1xme_A          289 -----HQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGR-----GLFGWIRALPWDNPAFVAPVLG  358 (568)
T ss_dssp             -----GCTTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----STTHHHHHSCTTCHHHHHHHHH
T ss_pred             -----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----EEEEHHHHHCCCCHHHHHHHHH
T ss_conf             -----112677877689999999999999999999999999987502236785-----2453777763898578999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             99733357888998777632980114654321013221233340125799---998799999999853105640266
Q gi|254780473|r  250 IAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYI---LVLPAFGIFSEVVATFSGKRLFGY  323 (671)
Q Consensus       250 i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYI---liLPa~Gi~seiip~fs~kplfgy  323 (671)
                      ++.+-+-..+-.++            ....-|. ...|=.|.=||=...+   .++-.+|.+|...|+..||++.+.
T Consensus       359 ~~~f~~gG~tGv~~------------a~~~in~-~~H~T~~VvaHfH~~l~g~~~~~~~g~~y~~~P~ltGr~l~~~  422 (568)
T 1xme_A          359 LLGFIPGGAGGIVN------------ASFTLDY-VVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISDA  422 (568)
T ss_dssp             HHHHHHHHHHHHHH------------TSGGGHH-HHTTBTHHHHHHHHHTTTHHHHHHHHTHHHHHHHHHCCCCCHH
T ss_pred             HHHHHHHCCCHHHH------------CCCCCCH-HHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99999625205654------------4551259-8808856766520218999999999999999999968820178