HHsearch results for GI: 254780473 and protein with PDBid: 3mk7_A
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=100.00 E-value=0 Score=658.02 Aligned_cols=450 Identities=14% Similarity=0.152 Sum_probs=389.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00001479999999999999999999999999985076756677668789899999999999999999999999999999
Q gi|254780473|r 59 FTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVP 138 (671)
Q Consensus 59 ltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvP 138 (671)
-+++|||-+. +|+++|++++++|+++|+++|.|++.|+.. ...++++|||+.|+||..|+|++++|...|++||++|
T Consensus 6 ~~~~d~ki~~-~y~~~a~~~l~~g~~~gl~~~~~l~~p~~~--~~~~~~~y~~~~t~H~~~mif~~~~~~~~g~~~~l~p 82 (474)
T 3mk7_A 6 STAYSYKVVR-QFAIMTVVWGIVGMGLGVFIAAQLAWPFLN--FDLPWTSFGRLRPLHTNAVIFAFGGCALFATSYYSVQ 82 (474)
T ss_dssp CCSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCGGGG--TTCTTTSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5643689999-999999999999999999999999587655--5876300687999999999999999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86498640058899999999999999999999717677888313478655877885204588779999999998755689
Q gi|254780473|r 139 LQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINL 218 (671)
Q Consensus 139 l~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNf 218 (671)
+++|+| +++||+|+++||++..|.++...|+..|... +.++.|+|.. ...+.++++++.++|+
T Consensus 83 ~~~g~~-l~~~rl~~~~fwl~~~~~~~~~~~~~~g~~~-g~~~~~~p~~---------------~~~~~~i~~~l~~~~~ 145 (474)
T 3mk7_A 83 RTCQTT-LFAPKLAAFTFWGWQLVILLAAISLPLGFTS-SKEYAELEWP---------------IDILITIVWVAYAVVF 145 (474)
T ss_dssp HHHTSC-CSSHHHHHHHHHHHHHHHHHHHHHTTTTCBC-CCTTCCBCHH---------------HHHHHHHHHHHHHHHH
T ss_pred HHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHH---------------HHHHHHHHHHHHHHHH
T ss_conf 980997-6642489999999999999999999728777-8555665789---------------9999999999999999
Q ss_pred HHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999723689883133156668999999999973335788899877763298011465432101322123334012579
Q gi|254780473|r 219 VVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVY 298 (671)
Q Consensus 219 i~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVY 298 (671)
++|+.++|+|+++.... +..+.++..+.+.+...+.... .....++....++| ..+.+|+++|||||
T Consensus 146 ~~ti~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~W~~~~~~~~ 212 (474)
T 3mk7_A 146 FGTLAKRKVKHIYVGNW-------FFGAFILTVAILHVVNNLEIPV---TAMKSYSLYAGATD---AMVQWWYGHNAVGF 212 (474)
T ss_dssp HHHHHTCSSSSCCHHHH-------HHHHHHHHHHHHHHHHTCEEEE---ETTEEEESCCHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCC---CCEEEEECCCHHHH
T ss_conf 99999844799818899-------9999999999999999886676---50454366665544---10587652672677
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987999999998531056402668999999999999753322102247875889987653346788987799998787
Q gi|254780473|r 299 ILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLF 378 (671)
Q Consensus 299 IliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~ 378 (671)
++++|++|++||++|+++|||++||+.+++++.++.++|..+|.||||++|.|++.+.+++++|+++++|+++|+|||+.
T Consensus 213 ~~~~~~~gv~y~iip~~~~~~l~s~~~~~~~~~~~~~~~~~v~~HH~~~~g~p~~~~~~~~~~t~li~vP~~~~~f~~~~ 292 (474)
T 3mk7_A 213 FLTAGFLGIMYYFVPKQAERPVYSYRLSIVHFWALITVYIWAGPHHLHYTALPDWAQSLGMVMSLILLAPSWGGMINGMM 292 (474)
T ss_dssp TTTHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHHHHHGGGGGGGGGTTSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65888986672131124676326699999999999998887722332306984899999999999987469999999999
Q ss_pred HHCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 42587--3022437999999999999887556530343211121274220447899999999999999999962443076
Q gi|254780473|r 379 TMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGY 456 (671)
Q Consensus 379 Tl~~G--~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr 456 (671)
|++++ +++.++++.|.++++..|.+||++|++++.++.|.+.|||+|||||||+++.|+.+++.+|++|||+||++||
T Consensus 293 tl~~~~~~~~~~~~~~~~~~~~~~f~~gg~~G~~~~~~~~n~~~H~T~~vvaHfH~~l~g~~~~~~~g~~y~~~P~l~Gr 372 (474)
T 3mk7_A 293 TLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGALGWVAMVSIGALYHLVPKVFGR 372 (474)
T ss_dssp GGTTGGGHHHHCHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTBSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEHHEEEEHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98521130576778999999999997650103652340133200676114201012159899999999999997787483
Q ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHCCCC-CC---------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74--71689999999999999999999998764-0530300258-70---------057999999999999999999999
Q gi|254780473|r 457 QL--NSFWGKVSFWCWFVGFYLAFMPLYALGLK-GVTRRLSQYE-DT---------TLQVYYVVALLGAVLIGIGVFSFV 523 (671)
Q Consensus 457 ~l--~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~-GmpRR~~~y~-~~---------~~~~~n~istiGa~l~~~g~l~f~ 523 (671)
++ ++|++|+|||++++|++++++|||++|+. |++||.++|+ +. .++|++.++++|++++.+|+++++
T Consensus 373 ~~~~s~~l~~~~Fwl~~iG~~~~~~~~~~~Gl~qg~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~i~~~g~l~f~ 452 (474)
T 3mk7_A 373 EQMHSIGLINTHFWLATIGTVLYIASMWVNGIAQGLMWRAINDDGTLTYSFVESLEASHPGFVVRMIGGAIFFAGMLVMA 452 (474)
T ss_dssp SSCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCTTSSBSCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50205699999999999999999999999997067667422777432441899898876999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999744953568999899
Q gi|254780473|r 524 LSFIVSFLNRSKLQDTIGDPW 544 (671)
Q Consensus 524 ~nl~~S~~~~~~~~~~~~dPW 544 (671)
+|+++|+|+||++++ ||.
T Consensus 453 ~nl~~t~~~g~~~~~---~~~ 470 (474)
T 3mk7_A 453 YNTWRTVQAAKPAEY---DAA 470 (474)
T ss_dssp HHHHHHHHSCSSCCC---CCC
T ss_pred HHHHHHHHCCCCCCC---CCC
T ss_conf 999999760898999---966