HHsearch results for GI: 254780473 and protein with PDBid: 3mk7_A
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=98.57 E-value=3.1e-06 Score=58.62 Aligned_cols=225 Identities=11% Similarity=0.053 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHH------HHHHHHHHHHHCCC--CCCCHHH
Q ss_conf 32212333401257999987-999999998531056402668999999999------99975332210224--7875889
Q gi|254780473|r 284 MYINLIWIWGHPEVYILVLP-AFGIFSEVVATFSGKRLFGYNSMVYATLAI------TILSYTVWLHHFFT--MGSGANV 354 (671)
Q Consensus 284 L~q~LFW~fGHPeVYIliLP-a~Gi~seiip~fs~kplfgy~~~v~A~~~i------~~lsf~VW~HHmFt--~G~~~~~ 354 (671)
-|-.++=..|--.+|.++.| .+|..+.++|+.+++|+.+.|....+.... +..|.... +..-. ...+-..
T Consensus 52 ~y~~~~t~H~~~mif~~~~~~~~g~~~~l~p~~~g~~l~~~rl~~~~fwl~~~~~~~~~~~~~~g-~~~g~~~~~~p~~~ 130 (474)
T 3mk7_A 52 SFGRLRPLHTNAVIFAFGGCALFATSYYSVQRTCQTTLFAPKLAAFTFWGWQLVILLAAISLPLG-FTSSKEYAELEWPI 130 (474)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHTTTT-CBCCCTTCCBCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHH
T ss_conf 06879999999999999999999999999999809976642489999999999999999999728-77785556657899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE-ECHHHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCEEECC
Q ss_conf 98765334678898779999878742587302-2437999999999999887556530343-----------21112127
Q gi|254780473|r 355 NAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVR-FEVPMMWTLGFMITFLIGGMTGVLLAVP-----------PADFTLHN 422 (671)
Q Consensus 355 ~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir-~~~pml~~lgfi~~F~iGG~tGv~lA~~-----------~~D~~lHn 422 (671)
.. .+.+....-..|.+.|..+.|.+ ......+..+.+..+..--+.+.+.... ..|. .+
T Consensus 131 ~~-------~~~i~~~l~~~~~~~ti~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 201 (474)
T 3mk7_A 131 DI-------LITIVWVAYAVVFFGTLAKRKVKHIYVGNWFFGAFILTVAILHVVNNLEIPVTAMKSYSLYAGATDA-MV- 201 (474)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHHHHHHHHTCEEEEETTEEEESCCHHHHH-HH-
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CE-
T ss_conf 99-------9999999999999999998447998188999999999999999999886676504543666655441-05-
Q ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHH
Q ss_conf 422044789999999999999999996244307674-7168999999999999999999999876405303002587005
Q gi|254780473|r 423 SLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQL-NSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTL 501 (671)
Q Consensus 423 T~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l-~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~ 501 (671)
..|..+|.... -.....++..||-.||..||++ ++++.+..||+..+.-. .+-...++.-+.|
T Consensus 202 ~~W~~~~~~~~---~~~~~~~gv~y~iip~~~~~~l~s~~~~~~~~~~~~~~~~-----------~v~~HH~~~~g~p-- 265 (474)
T 3mk7_A 202 QWWYGHNAVGF---FLTAGFLGIMYYFVPKQAERPVYSYRLSIVHFWALITVYI-----------WAGPHHLHYTALP-- 265 (474)
T ss_dssp HHHHHHHHHHH---TTTHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHHHHHGG-----------GGGGGGGTTSSSC--
T ss_pred EEEECCCHHHH---HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHH-----------HHHCCCEECCCCC--
T ss_conf 87652672677---6588898667213112467632669999999999999888-----------7722332306984--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 799999999999999999999999999974495
Q gi|254780473|r 502 QVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRS 534 (671)
Q Consensus 502 ~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~ 534 (671)
..+..+.++-..++.+.....+.|...++++++
T Consensus 266 ~~~~~~~~~~t~li~vP~~~~~f~~~~tl~~~~ 298 (474)
T 3mk7_A 266 DWAQSLGMVMSLILLAPSWGGMINGMMTLSGAW 298 (474)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHGGGTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 899999999999987469999999999985211