HHSEARCH alignment of GI: 254780473 and SCOP domain: d1ffta_

Alignment
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=1187.05  Aligned_cols=501  Identities=69%  Similarity=1.291  Sum_probs=495.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             01479999999999999999999999999985076756677668789899999999999999999999999999999864
Q gi|254780473|r   62 VDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQI  141 (671)
Q Consensus        62 ~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~i  141 (671)
                      |||||||++|+++|++++++|+++|++||.||+.|+.+...++++|.|||++|+||++|+|++++|++.|++||++|+|+
T Consensus         1 vdHK~Ig~~Yl~~~~~~~~iG~~~alliR~el~~~~~~~~~~~~~~~Y~~~~T~HG~~Mif~~~~p~~~Gf~n~lvPl~l   80 (501)
T d1ffta_           1 VDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQI   80 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSSSSCTTCCCSTHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98799999999999999999999999999998617888767788677888559999999999999999999999999976


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98640058899999999999999999999717677888313478655877885204588779999999998755689999
Q gi|254780473|r  142 GARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVT  221 (671)
Q Consensus       142 GardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~T  221 (671)
                      |+|||||||+|++|||+++.|.+++..|.+.++.+++|||.|||++..+++|+.++|++++|+++.++||+++++|+++|
T Consensus        81 Ga~dmafPrln~~sfWl~~~~~~l~~~s~~~~~~~~~gwt~y~pl~~~~~~~~~~~~l~i~gl~l~gissil~~in~i~T  160 (501)
T d1ffta_          81 GARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVT  160 (501)
T ss_dssp             CCSSCSSHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSTTTTCTTTSSCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99731107589999999999999865012344655432322444345678996358999999999999999999999999


Q ss_pred             HHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99723689883133156668999999999973335788899877763298011465432101322123334012579999
Q gi|254780473|r  222 IIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILV  301 (671)
Q Consensus       222 I~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIli  301 (671)
                      +.|+|+|||+++|+|+|+|+.++|++++++++|+++++++++++||++|++||+++.||||+|||||||+|||||||+++
T Consensus       161 i~~~R~~gm~~~~~PLf~w~~~~t~il~~la~pvla~~~~~llld~~~g~~ff~~~~ggdp~l~q~LFWffgHP~VYi~i  240 (501)
T d1ffta_         161 ILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILI  240 (501)
T ss_dssp             HHHCSCTTCCGGGCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCSSCTTTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCCCCHHHCCCHHHEEEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCCEEEEEH
T ss_conf             99853799972105542013224444376688899988878630100487766677787510202201204784123315


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             87999999998531056402668999999999999753322102247875889987653346788987799998787425
Q gi|254780473|r  302 LPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMR  381 (671)
Q Consensus       302 LPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~  381 (671)
                      +|++|++||++|+++|||+|||+.+++|+++++++|+.||.||||++|.++..+.+|++.|++|++||++|+|||+.|+|
T Consensus       241 lPa~g~~~~iip~~~~~~lf~~~~~~~a~~~i~~ls~~vw~HH~~~~g~~~~~~~~~~~~T~~iaiPs~~~~f~w~~tl~  320 (501)
T d1ffta_         241 LPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMY  320 (501)
T ss_dssp             HHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHTTSSCGGGGTTTTTCCHHHHHHHHHHHHHTTHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             38999999998985399653405789999988872101000320145667046677889999999999999999988835


Q ss_pred             CCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             87302243799999999999988755653034321112127422044789999999999999999996244307674716
Q gi|254780473|r  382 LGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSF  461 (671)
Q Consensus       382 ~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~  461 (671)
                      +|++|+++|++|+++|+++|++||+||+++|+.++|.++||||||||||||++.+|+++++||++|||+||+|||++|||
T Consensus       321 ~g~~~~~~~~l~~l~fi~~F~~GG~tGi~~a~~~~d~~~H~T~~VvgHFH~~~~~~~v~~~~~~~y~~~P~l~Gr~l~~~  400 (501)
T d1ffta_         321 QGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNET  400 (501)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTTTBHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             87313360589999999999987554553202578888503212301321355307999999999999988646122469


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89999999999999999999998764053030025870057999999999999999999999999999744953568999
Q gi|254780473|r  462 WGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIG  541 (671)
Q Consensus       462 lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~~~~~  541 (671)
                      ++|+|||++++|++++|+|||++|++|||||+++|+|++|+++|+++++|+.++++|++++++|++.|+++|++.++.++
T Consensus       401 l~~~~f~~~~iG~~~~f~pm~~~G~~G~pRR~~~y~~~~~~~~~~~~~~g~~i~~~~~~~f~~~~~~s~~~~~~~~~~~~  480 (501)
T d1ffta_         401 WGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTG  480 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTCSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99999999999999999999997748988776778874489999999999999999999999999999995204787878


Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             899997101269981199894
Q gi|254780473|r  542 DPWDGRTLEWSISSPSPQYNF  562 (671)
Q Consensus       542 dPW~~~tLEW~~~sPpp~~nF  562 (671)
                      |||+++||||+||||||+|||
T Consensus       481 npw~~~tlEW~~~sppp~~nf  501 (501)
T d1ffta_         481 DPWGGRTLEWATSSPPPFYNF  501 (501)
T ss_dssp             SCTTCCCTTTTSCSSCCTTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCC
T ss_conf             999997854698999998889


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit I-like
superfamily: Cytochrome c oxidase subunit I-like
family: Cytochrome c oxidase subunit I-like
domain: Cytochrome O ubiquinol oxidase, subunit I
species: Escherichia coli [TaxId: 562]