HHSEARCH alignment of GI: 254780473 and SCOP domain: d1v54a_

Alignment
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=0  Score=1289.25  Aligned_cols=511  Identities=37%  Similarity=0.760  Sum_probs=500.5

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf             44303000014799999999999999999999999999850767566776687898999999999999999999999-99
Q gi|254780473|r   54 LWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMPMIT-GI  132 (671)
Q Consensus        54 lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~-G~  132 (671)
                      .||+|+|||||||||++|++++++++++|+++|++||+||+.|+   ..+.++|.|||++|+||++|+|+++||++. ||
T Consensus         2 f~~~w~~t~dHK~iG~lYl~~~~~~~~~G~~lslliR~eL~~p~---~~~~~~~~Yn~~~T~Hg~iMiF~~~~P~~~ggF   78 (514)
T d1v54a_           2 FINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPG---TLLGDDQIYNVVVTAHAFVMIFFMVMPIMIGGF   78 (514)
T ss_dssp             HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS---CSSCSHHHHHHHHHHHHHHHHHTTHHHHHTTHH
T ss_pred             CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47775102778999999999999999999999999999876997---667982389998999999999999999999999


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999986498640058899999999999999999999717677888313478655877885204588779999999998
Q gi|254780473|r  133 MNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTT  212 (671)
Q Consensus       133 ~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsl  212 (671)
                      +||++|+|+|||||||||+|++|||+++.|.+++..|.+.++++++|||+|||||+.+++++.++|++++++++.|+||+
T Consensus        79 gn~lvPl~iGa~dmafPRlN~~sfWl~~~~~~ll~~s~~~~~g~~~GWT~YpPLs~~~~~~~~~vdl~i~~l~l~gissi  158 (514)
T d1v54a_          79 GNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSI  158 (514)
T ss_dssp             HHHHHHHHTTCSSCSSHHHHHHHHHTHHHHHHHHHHHHHSTTCCCSTTTTCTTTTSTTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999985699643437789999999999999999997148889886634655204687898579999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf             75568999999723689883133156668999999999973335788899877763298011465432101322123334
Q gi|254780473|r  213 LSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIW  292 (671)
Q Consensus       213 l~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~f  292 (671)
                      ++++|+++||.|+|+|||+++|+|+|+|+.++|++++++++|+|+++++++++||++|++||+++.||||+|||||||+|
T Consensus       159 lg~iNfi~Ti~~~r~~gm~~~r~Plf~Ws~~vtsil~l~a~PvLa~a~~~ll~dr~~gt~ff~~~~Ggdp~L~qhLFWff  238 (514)
T d1v54a_         159 LGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFF  238 (514)
T ss_dssp             HHHHHHHHHHHHSSCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHC
T ss_conf             98899999998761688741466068999999999999998999999999999985798304777786799999999854


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             012579999879999999985310-5640266899999999999975332210224787588998765334678898779
Q gi|254780473|r  293 GHPEVYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGA  371 (671)
Q Consensus       293 GHPeVYIliLPa~Gi~seiip~fs-~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgv  371 (671)
                      ||||||+++|||+|++||++|+++ |||+|||+.+++|+++|+++|+.||+|||||+|++++.|.+|+++|++|+|||++
T Consensus       239 gHPeVYi~iLPa~g~~s~ii~~~s~rk~~fg~~~~v~a~~~i~~ls~~Vw~HHmft~g~~~~~~~~f~~~T~~IaiPt~v  318 (514)
T d1v54a_         239 GHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGV  318 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSSCTTHHHHHHHHHHHHHHTTSCGGGGCTTSCCCHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             88602212998899999999987388745571999999999999820112346221388688899999999999987899


Q ss_pred             HHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99987874258730224379999999999998875565303432111212742204478999999999999999999624
Q gi|254780473|r  372 KIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFP  451 (671)
Q Consensus       372 kiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf~~fagiyyW~P  451 (671)
                      |+|||++|+|+|++|+++||+|+++|+++|++||+||+++|+++.|.++||||||||||||++.+|++++++||+|||+|
T Consensus       319 kvfnwi~T~~~g~~~~~~~~l~~l~fi~~F~~GG~tGi~la~~~~D~~lHdTy~VVaHFH~vl~~g~v~~~~a~~y~w~P  398 (514)
T d1v54a_         319 KVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFP  398 (514)
T ss_dssp             HHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHEEECCCEEEEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf             99999998618865688788999999999998642120115313331332550577323465344899999999999998


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43076747168999999999999999999999876405303002587005799999999999999999999999999974
Q gi|254780473|r  452 KAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFL  531 (671)
Q Consensus       452 k~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~~~~n~istiGa~l~~~g~l~f~~nl~~S~~  531 (671)
                      |++||++|||++|+|||++++|+|++|+|||++|++|||||+++|++ +|++||+++++|+++++++++++++|++.|++
T Consensus       399 k~~Gr~~~e~l~~~~f~~~fiG~~~~f~pmh~lGl~GmpRR~~~Y~~-~~~~~n~~~siG~~i~~~~~~~f~~~~~~s~~  477 (514)
T d1v54a_         399 LFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFA  477 (514)
T ss_dssp             HHHSBCCCHHHHHHHHHHHHHHHHHHHTHHHHHHHTTCBTTCSSCCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             15686067888999999999999999999999765899773667847-79999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf             4953568999899997101269981199894759607845
Q gi|254780473|r  532 NRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTI  571 (671)
Q Consensus       532 ~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v~~~  571 (671)
                      +|||+.   .|||+++||||+++||||+|||++.|+|+-+
T Consensus       478 ~~~~~~---~~pw~~~tlEW~~~sPpp~~nF~~~p~v~~~  514 (514)
T d1v54a_         478 SKREVL---TVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK  514 (514)
T ss_dssp             HCCBBC---CCTTGGGCGGGTTCSSCCSSCCSSCCEECCC
T ss_pred             HCCCCC---CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             588778---9999999821066999998787999824789


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit I-like
superfamily: Cytochrome c oxidase subunit I-like
family: Cytochrome c oxidase subunit I-like
domain: Mitochondrial cytochrome c oxidase, subunit I
species: Cow (Bos taurus) [TaxId: 9913]