HHSEARCH alignment of GI: 254780473 and SCOP domain: d1xmea1

Alignment
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=916.40  Aligned_cols=481  Identities=23%  Similarity=0.355  Sum_probs=444.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4799999999999999999999999999850767566---7766878989999999999999999999999999999986
Q gi|254780473|r   64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGG---EGYLDAHHYDQIFTAHGVIMIFFVAMPMITGIMNFVVPLQ  140 (671)
Q Consensus        64 HK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~---~~~l~~~~Ynq~~T~HG~~Mif~~a~p~~~G~~n~lvPl~  140 (671)
                      .||||++|+++|++++++|+++|+++|.|++.|+...   ....++|+|||++|+||++|+|++++|++.|++||++|+|
T Consensus         4 ~k~i~~~yl~~a~~~lliG~~~gll~rl~l~~p~~~~~~~~~~~~~~~Y~~~~T~Hg~~mif~f~~~~~~g~~~y~vp~~   83 (549)
T d1xmea1           4 EKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARE   83 (549)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCCCHHHHHHHSTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             02889999999999999999999999999719874433000277700340500899999999999999999999999998


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             49864005889999999999999999999971767788831347865587788520458877999999999875568999
Q gi|254780473|r  141 IGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVV  220 (671)
Q Consensus       141 iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~~~~~GWt~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~  220 (671)
                      +|+||+  +|+|++|||++..|.++..+|++.|+ +++|||+|||||+.        +.+.+++.+..+|+++ ++|+++
T Consensus        84 lg~r~~--~~l~~~sfwl~~~g~vl~~~~~~~g~-~~~gwt~Y~PL~~~--------~~~~ig~~l~vv~~~~-~i~~~~  151 (549)
T d1xmea1          84 LNMRPN--MGLMWLSWWMAFIGLVVAALPLLANE-ATVLYTFYPPLKGH--------WAFYLGASVFVLSTWV-SIYIVL  151 (549)
T ss_dssp             HTCCCC--HHHHHHHHHHHHHHHHHHHHHHHTTS-CCSTTTTCTTBCCC--------HHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHCCCCCCC--------CCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             199962--25899999999999999999997488-64102213464445--------4301289999999999-999999


Q ss_pred             HHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99972368988313315666899999999997333578889987776329801146543210132212333401257999
Q gi|254780473|r  221 TIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL  300 (671)
Q Consensus       221 TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIl  300 (671)
                      |+.++|+++++.+|+|+++|+.++++++++++.|+++++..++.+||++|     +..||||+|||||||+|||||||++
T Consensus       152 t~~~~r~~~~~~~~~Pl~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-----~~~g~d~~L~q~LFW~fGHp~Vyi~  226 (549)
T d1xmea1         152 DLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFG-----LVEGVDPLVARTLFWWTGHPIVYFW  226 (549)
T ss_dssp             HHHHHHHHSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT-----SCSEECHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC-----CCCCCCEEEECCCHHHCCCCCCHHH
T ss_conf             99996668897210149999999999999997240677889999864047-----6778732442141110146631424


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHH---------
Q ss_conf             987999999998531056402668999999999999753322102247-8758899876533467889877---------
Q gi|254780473|r  301 VLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTM-GSGANVNAFFGIMTMVIAVPTG---------  370 (671)
Q Consensus       301 iLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW~HHmFt~-G~~~~~~~~F~i~Tm~IaIPTg---------  370 (671)
                      ++|++|++||++|+++|||+|||+.++++++++.++|+.||.||||++ |++++.+.++++.|++|++||+         
T Consensus       227 ilPa~g~~y~iip~~s~kplfs~~l~~~af~~i~~~~~~vg~HH~f~~~G~~~~~~~~~~~~T~~i~vPs~~~~f~~~~t  306 (549)
T d1xmea1         227 LLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAAS  306 (549)
T ss_dssp             HHHHHHHHHHTHHHHHTSCBSCHHHHHHHHHHHHHHSSTTGGGGCTTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98788772555420244404431078888999998510003655400057788899999999999999988999999999


Q ss_pred             ----------HHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEHHHHHHHHHHHHHHH
Q ss_conf             ----------9999878742587302243799999999999988755653034321112127422044789999999999
Q gi|254780473|r  371 ----------AKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVF  440 (671)
Q Consensus       371 ----------vkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lHnT~fVVAHFHyvl~gg~vf  440 (671)
                                +|+|||++|+|+|+++++.++++.++    |.+||+||+++|+.++|.++|||||||||||+++.|++++
T Consensus       307 l~~~~~~~~g~~~f~Wl~tl~~~~~~~~~~~l~~~~----f~~gg~tG~~~a~~~~n~~~H~T~~VvgHfH~~~~g~~~~  382 (549)
T d1xmea1         307 LEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLG----FIPGGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTL  382 (549)
T ss_dssp             HHHHHHHTTCCSTTHHHHHSCTTCHHHHHHHHHHHH----HHHHHHHHHHHTSGGGHHHHTTBTHHHHHHHHHTTTHHHH
T ss_pred             HHHHCEECCCCCEEEEEEECCCCCHHHHHHHHHHHH----HHHHCCCCHHHCCCHHHHHHCCCCEECCCEEEEHHHHHHH
T ss_conf             986130237862244430306797678999999999----9851544112014328888536630003413442989999


Q ss_pred             HHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCC--C--CHHHHHHHHHHHHHH
Q ss_conf             99999999624430767471---6899999999999999999999987640530300258--7--005799999999999
Q gi|254780473|r  441 GLFAGIVYWFPKAFGYQLNS---FWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYE--D--TTLQVYYVVALLGAV  513 (671)
Q Consensus       441 ~~fagiyyW~Pk~~Gr~l~e---~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~--~--~~~~~~n~istiGa~  513 (671)
                      +.||++|||+||++||+++|   |++++|||++++|++++|+|||++|++|||||.++|+  |  ++++++|+++++|+.
T Consensus       383 ~~~g~~y~~~P~ltGr~l~~~~~kL~~~~fwl~~iG~~~~~~~m~~~Gl~g~pRR~~~~~~~~~~~~~~~~~~~~~igg~  462 (549)
T d1xmea1         383 TAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGI  462 (549)
T ss_dssp             HHHHTHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSSCCGGGSGGGCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999989986753558999999999999999999999999887626787604367731778888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             9999999999999999744953568999899997101269981199894759607
Q gi|254780473|r  514 LIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIV  568 (671)
Q Consensus       514 l~~~g~l~f~~nl~~S~~~~~~~~~~~~dPW~~~tLEW~~~sPpp~~nF~~~P~v  568 (671)
                      ++.+|+++|++|++.|+++|||+++   |||+..++||+++||||++||..+|..
T Consensus       463 i~~~g~l~f~~nl~~s~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~l~~~  514 (549)
T d1xmea1         463 VLLVALLLFIYGLFSVLLSRERKPE---LAEAPLPFAEVISGPEDRRLVLAMDRI  514 (549)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCHH---HHSSCCCCCCBCCCSSHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999999999994777999---999998712257798899975558750


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit I-like
superfamily: Cytochrome c oxidase subunit I-like
family: Cytochrome c oxidase subunit I-like
domain: Bacterial ba3 type cytochrome c oxidase subunit I
species: Thermus thermophilus [TaxId: 274]