HHSEARCH alignment of GI: 254780473 and SCOP domain: d3dtua1

Alignment
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=100.00  E-value=0  Score=1256.15  Aligned_cols=506  Identities=39%  Similarity=0.808  Sum_probs=487.9

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------------------------CCCCCHH
Q ss_conf             2344303000014799999999999999999999999999850767566------------------------7766878
Q gi|254780473|r   52 GYLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGG------------------------EGYLDAH  107 (671)
Q Consensus        52 ~~lw~~wltt~dHK~IGi~Yiv~a~~~ll~Gg~~allmR~qla~p~~~~------------------------~~~l~~~  107 (671)
                      |..|+||+|||||||||++|++++++++++|+++|++||+||+.|....                        ....++|
T Consensus         1 r~~~~~wl~t~dHK~IG~~Yl~~~~~~~~~G~~~alliR~eL~~Pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (538)
T d3dtua1           1 RGFFTRWFMSTNHKDIGVLYLFTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVKGFFQSLWPSAVENCTPNGH   80 (538)
T ss_dssp             CCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSSSBGGGGSSCHHHHHHHHTSCCCGGGCCBCHH
T ss_pred             CCCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             96102100047789999999999999999999999999999748863101331101111111000011121123578710


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCC
Q ss_conf             98999999999999999999999-99999999864986400588999999999999999999997176-----7788831
Q gi|254780473|r  108 HYDQIFTAHGVIMIFFVAMPMIT-GIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGE-----FASVGWL  181 (671)
Q Consensus       108 ~Ynq~~T~HG~~Mif~~a~p~~~-G~~n~lvPl~iGardlaFPrlna~sfWl~~~g~~l~~~S~~~g~-----~~~~GWt  181 (671)
                      +|||++|+||++|||+++||.+. ||+||++|+|+|||||||||+|++|||++++|.+++..|+++++     ++++|||
T Consensus        81 ~Yn~l~T~HG~iMiFf~v~P~l~ggfgN~lvPl~iGA~DmafPRlN~~sfWl~~~~~~l~~~s~~~~~~~~~~g~~~GWt  160 (538)
T d3dtua1          81 LWNVMITGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRMNNLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWV  160 (538)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHTTTHHHHHHHHHHTCSSCSCHHHHHHHHHHHHHHHHHHHHHTTSBCGGGSBSCCSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             68898998999999999999999999999999866996310387899999998899999999883277776668877850


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34786558778852045887799999999987556899999972368988313315666899999999997333578889
Q gi|254780473|r  182 AYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLF  261 (671)
Q Consensus       182 ~YpPLs~~~~spg~g~d~~i~gl~l~gigsll~~iNfi~TI~~~RapGm~l~rmPlf~W~~l~tsil~i~a~PvL~~al~  261 (671)
                      .|||+|..  +++.++|+|+++++++|+||+++++|+++||++||+|||+++|+|+|+|+.++|++++++++|+|+++++
T Consensus       161 ~y~Pls~~--~~~~~vd~~i~~l~l~gissi~~~iN~i~Ti~~~R~~gm~~~~~Plf~w~~l~t~~l~l~~~PvL~~~~~  238 (538)
T d3dtua1         161 LYPPLSTS--ESGYSTDLAIFAVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAIT  238 (538)
T ss_dssp             TCTTHHHH--CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45454336--8985099999999999999999999999999997689997220249999999999999999999999999


Q ss_pred             HHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98777632980114654321013221233340125799998799999999853105640266899999999999975332
Q gi|254780473|r  262 LLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVW  341 (671)
Q Consensus       262 ll~lDr~~g~~FF~~~~GGdplL~q~LFW~fGHPeVYIliLPa~Gi~seiip~fs~kplfgy~~~v~A~~~i~~lsf~VW  341 (671)
                      ++++||++|++||+++.||||+|||||||+||||||||+++|++|++||++|++||||+|||+.+++|+++|+++|+.||
T Consensus       239 ~ll~Dr~~gt~ff~~~~GgdplL~qhLFWffgHPeVYi~ilPa~Gi~s~ii~~~s~k~lfg~~~~~~a~~~i~~ls~~Vw  318 (538)
T d3dtua1         239 MLLTDRNFGTTFFQPSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVLGFVVW  318 (538)
T ss_dssp             HHHHHHHSCCCTTCGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHTTSCG
T ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999827985327777857899999999947870240101378999999986047655470899999999999873231


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf             21022478758899876533467889877999987874258730224379999999999998875565303432111212
Q gi|254780473|r  342 LHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLH  421 (671)
Q Consensus       342 ~HHmFt~G~~~~~~~~F~i~Tm~IaIPTgvkiFnwl~Tl~~G~ir~~~pml~~lgfi~~F~iGG~tGv~lA~~~~D~~lH  421 (671)
                      +||||++|++++.+.+|+++|++|++||++|+|||++|+|+|++|+++||+|+++|+++|++||+||+++|+.++|.++|
T Consensus       319 ~HHmf~~g~~~~~~~~f~~~T~~IaiPs~i~vfnwl~Tl~gg~~~~~~p~l~~l~fi~~F~iGG~tGi~la~~~~d~~~H  398 (538)
T d3dtua1         319 AHHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYH  398 (538)
T ss_dssp             GGGCTTSSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
T ss_conf             04643667761155368999999999789999999999986063657289999999999997401200012025432004


Q ss_pred             CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHH
Q ss_conf             74220447899999999999999999962443076747168999999999999999999999876405303002587005
Q gi|254780473|r  422 NSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTL  501 (671)
Q Consensus       422 nT~fVVAHFHyvl~gg~vf~~fagiyyW~Pk~~Gr~l~e~lgk~~Fwl~~iGf~l~F~pm~~lGl~GmpRR~~~y~~~~~  501 (671)
                      |||||||||||++.+++++++||++|||+||++||++|||++|+|||++++|+|++|+|||++|++|||||+++|++ +|
T Consensus       399 dTy~VvaHFH~v~~~g~v~~~~a~~y~w~Pk~tGr~~~~~l~~~hfwl~~iG~~l~f~pm~~~Gl~GmpRR~~~y~~-~~  477 (538)
T d3dtua1         399 DTYYVVAHFHYVMSLGAVFGIFAGIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPE-AF  477 (538)
T ss_dssp             TBHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSSCSCCCG-GG
T ss_pred             CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH-HH
T ss_conf             64125630012102089999999999999998500005789999999999999999999999874888662467817-79


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q ss_conf             79999999999999999999999999997449535689998999--97101269981199894
Q gi|254780473|r  502 QVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD--GRTLEWSISSPSPQYNF  562 (671)
Q Consensus       502 ~~~n~istiGa~l~~~g~l~f~~nl~~S~~~~~~~~~~~~dPW~--~~tLEW~~~sPpp~~nF  562 (671)
                      .+||+++++|++++++|+++|++|++.|+++|||+.+  +||||  +|||||+++||||+|||
T Consensus       478 ~~~n~i~tiG~~i~~~g~l~f~~~~~~s~~~g~~~~~--~~~w~~~a~tlEW~~~sppp~~nF  538 (538)
T d3dtua1         478 ATWNFVSSLGAFLSFASFLFFLGVIFYTLTRGARVTA--NNYWNEHADTLEWTLTSPPPEHTF  538 (538)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCS--SCSSCTTCCSGGGGSCSSCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999999999999999999999983995878--998679999851388999997789


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Cytochrome c oxidase subunit I-like
superfamily: Cytochrome c oxidase subunit I-like
family: Cytochrome c oxidase subunit I-like
domain: Bacterial aa3 type cytochrome c oxidase subunit I
species: Rhodobacter sphaeroides [TaxId: 1063]