RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase
subunit I [Candidatus Liberibacter asiaticus str. psy62]
(671 letters)
>gnl|CDD|29933 cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I.
Ubiquinol oxidase, the terminal oxidase in the
respiratory chains of aerobic bacteria, is a multi-chain
transmembrane protein located in the cell membrane. It
catalyzes the reduction of O2 and simultaneously pumps
protons across the membrane. The number of subunits in
ubiquinol oxidase varies from two to five. Subunit I
contains a heme-copper binuclear center (the active site
where O2 is reduced to water) formed by a high-spin heme
and a copper ion. It also contains a low-spin heme,
believed to participate in the transfer of electrons
from ubiquinol to the binuclear center. For every
reduction of an O2 molecule, eight protons are taken
from the inside aqueous compartment and four electrons
are taken from ubiquinol on the opposite side of the
membrane. The four electrons and four of the protons
are used in the reduction of O2; the four remaining
protons are pumped across the membrane. This charge
separation of four charges contributes to the
electrochemical gradient used for ATP synthesis. Two
proton channels, the D-pathway and K-pathway, leading to
the binuclear center have been identified in subunit I.
It is generally believed that the channels contain water
molecules that act as 'proton wires' to transfer the
protons. A well-defined pathway for the transfer of
pumped protons beyond the binuclear center has not been
identified. Electrons are believed to be transferred
directly from ubiquinol (the electron donor) to the
low-spin heme, and directly from the low-spin heme to
the binuclear center..
Length = 501
Score = 709 bits (1831), Expect = 0.0
Identities = 303/506 (59%), Positives = 375/506 (74%), Gaps = 6/506 (1%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
W T+VDHK+IGIMYII + V RG DA++MR Q A+ +L HY+QIFT HG
Sbjct: 1 WLTTVDHKRIGIMYIITAFVFFLRGGVDALLMRTQLALPGND---FLSPEHYNQIFTMHG 57
Query: 118 VIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFAS 177
IMIF AMP++ G+MN++VPLQIGARDV+FP LN SFW+ + G +++ SL IG F
Sbjct: 58 TIMIFLFAMPLVFGLMNYLVPLQIGARDVAFPRLNALSFWLFLFGGLLLNASLLIGGFPD 117
Query: 178 VGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPV 237
GW AYPPLSG+ YSPGVGVDY+I GLQ +GIGT L IN +VTI+KMR PGMT+M+MP+
Sbjct: 118 AGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAINFIVTILKMRAPGMTLMRMPI 177
Query: 238 FVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEV 297
F WT ++I+I+ AFP+LTA L LL LDRY GT+FFTN LGGNPM++ +L WI+GHPEV
Sbjct: 178 FTWTTLVTSILILFAFPVLTAALALLELDRYFGTHFFTNALGGNPMLWQHLFWIFGHPEV 237
Query: 298 YILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAF 357
YIL+LPAFGIFSE+V TFS K LFGY SMVYAT+AI LS+ VW+HH FT G+GA VNAF
Sbjct: 238 YILILPAFGIFSEIVPTFSRKPLFGYRSMVYATVAIGFLSFGVWVHHMFTTGAGALVNAF 297
Query: 358 FGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPAD 417
F I TM+IAVPTG KIFNWLFTM G++RFE PM+W +GF++TF+IGG+TGV+LA PPAD
Sbjct: 298 FSIATMIIAVPTGVKIFNWLFTMWRGRIRFETPMLWAIGFLVTFVIGGLTGVMLASPPAD 357
Query: 418 FTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLA 477
F +H++ F+VAHFH +IGGVVF LFAG YWFPK FG LN GK SFW WF+GF L
Sbjct: 358 FQVHDTYFVVAHFHYVLIGGVVFPLFAGFYYWFPKMFGRMLNERLGKWSFWLWFIGFNLT 417
Query: 478 FMPLYALGLKGVTRRLSQYE-DTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKL 536
F P++ LGL G+ RR+ Y +++ +GA LI GV F+++ IVS +
Sbjct: 418 FFPMHILGLMGMPRRVYTYLPGPGWDPLNLISTIGAFLIAAGVLLFLINVIVSIRKGKR- 476
Query: 537 QDTIGDPWDGRTLEWSISSPSPQYNF 562
D GDPW RTLEW+ SSP P YNF
Sbjct: 477 -DATGDPWGARTLEWATSSPPPAYNF 501
>gnl|CDD|31185 COG0843, CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit
1 [Energy production and conversion].
Length = 566
Score = 594 bits (1532), Expect = e-170
Identities = 301/568 (52%), Positives = 386/568 (67%), Gaps = 9/568 (1%)
Query: 53 YLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQI 112
YLWK W TS DHK IGI+Y+IL++ L G A A++MRL+ A + G +LD Y+QI
Sbjct: 5 YLWKRWLTSTDHKDIGILYLILAIFFLLVGGALALLMRLELA--TPSGSQFLDPQLYNQI 62
Query: 113 FTAHGVIMIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFI 172
T HGVIMIFF AMP I G N++VPL IGARDV+FP LN SFW+ V GA++++ S F+
Sbjct: 63 LTLHGVIMIFFFAMPAIGGFANYLVPLMIGARDVAFPRLNAISFWLLVVGAILLVTSFFV 122
Query: 173 -GEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMT 231
G A GW AYPPLS ISYS G GVD +I GL + GIG+ L IN +VTI+ MR PGMT
Sbjct: 123 PGGAADTGWTAYPPLSAISYS-GPGVDLFILGLHLLGIGSLLGAINFIVTILNMRAPGMT 181
Query: 232 MMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWI 291
MMKMP+F W+ + I+I+ AFP+L A L +L LDR GT+FFT GG+P++Y +L W
Sbjct: 182 MMKMPLFTWSILITAILILLAFPVLAAALTMLLLDRNFGTSFFTPAGGGDPLLYQHLFWF 241
Query: 292 WGHPEVYILVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSG 351
+GHPEVYIL+LPAFGI SE++ TF+ K LFGY SMVYA +AI ILS+ VW HH FT G
Sbjct: 242 FGHPEVYILILPAFGIVSEIIPTFARKPLFGYTSMVYAFVAIGILSFIVWAHHMFTTGLP 301
Query: 352 ANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLL 411
A++ AFF I TM+IA+PTG KIFNWL T+ G++RF+ PM++ +GF++TF+IGG+TGVLL
Sbjct: 302 ADLRAFFSITTMIIAIPTGIKIFNWLATLWGGRIRFKTPMLFAIGFIVTFVIGGVTGVLL 361
Query: 412 AVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWF 471
A P DF +HN+ F+V HFH + GGVVFGLFAGI YWFPK G LN GK+ FW WF
Sbjct: 362 ASIPLDFVVHNTYFVVGHFHYVLGGGVVFGLFAGIYYWFPKMTGRMLNERLGKLHFWLWF 421
Query: 472 VGFYLAFMPLYALGLKGVTRRLSQYEDTT-LQVYYVVALLGAVLIGIGVFSFVLSFIVSF 530
+GF L F P++ LGL G+ RR + Y V+A +GA ++G+GV F+L+ +VS
Sbjct: 422 IGFNLTFFPMHVLGLMGMPRRYATYPGVPGFTPLNVIATVGAFILGLGVLLFLLNLVVSL 481
Query: 531 LNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPI-VSTIDAWEHMKNRGYRYPSEGF 589
+D GDPW RTLEW+ SSP P YNFA P V DA K+ G
Sbjct: 482 RKG--KRDATGDPWGARTLEWATSSPPPFYNFAELPYKVRASDAVYDNKSPGLYERYPSG 539
Query: 590 MPIHMPSNTATGIILAALSIVFSFAMVW 617
IHMP NT +++ S+ F F ++W
Sbjct: 540 -DIHMPYNTGEPFMISKFSLFFGFGLIW 566
>gnl|CDD|29930 cd00919, Heme_Cu_Oxidase_I, Heme-copper oxidase subunit I.
Heme-copper oxidases are transmembrane protein complexes
in the respiratory chains of prokaryotes and
mitochondria which catalyze the reduction of O2 and
simultaneously pump protons across the membrane. The
superfamily is diverse in terms of electron donors,
subunit composition, and heme types. The number of
subunits varies from three to five in bacteria and up to
13 in mammalian mitochondria. It has been proposed that
Archaea acquired heme-copper oxidases through gene
transfer from Gram-positive bacteria. Membership in the
superfamily is defined by subunit I, which contains a
heme-copper binuclear center (the active site where O2
is reduced to water) formed by a high-spin heme and a
copper ion. It also contains a low-spin heme, believed
to participate in the transfer of electrons to the
binuclear center. Only subunit I is common to the
entire superfamily. For every reduction of an O2
molecule, eight protons are taken from the inside
aqueous compartment and four electrons are taken from
the electron donor on the opposite side of the membrane.
The four electrons and four of the protons are used in
the reduction of O2; the four remaining protons are
pumped across the membrane. This charge separation of
four charges contributes to the electrochemical gradient
used for ATP synthesis. Two proton channels, the
D-pathway and K-pathway, leading to the binuclear center
have been identified in subunit I of cytochrome c
oxidase (CcO) and ubiquinol oxidase. A well-defined
pathway for the transfer of pumped protons beyond the
binuclear center has not been identified. Electron
transfer occurs in two segments: from the electron
donor to the low-spin heme, and from the low-spin heme
to the binuclear center. The first segment can be a
multi-step process and varies among the different
families, while the second segment, a direct transfer,
is consistent throughout the superfamily..
Length = 463
Score = 452 bits (1165), Expect = e-127
Identities = 229/467 (49%), Positives = 315/467 (67%), Gaps = 4/467 (0%)
Query: 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFF 123
HK IG++Y+I + V L G A+++RL+ A G +LD Y+Q+ TAHGVIMIFF
Sbjct: 1 HKDIGLLYLIFAFVALLLGGLLALLIRLELATP---GSLFLDPQLYNQLVTAHGVIMIFF 57
Query: 124 VAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAY 183
MP I G ++P IGARD++FP LNN SFW+ G ++++ S+ +G A GW Y
Sbjct: 58 FVMPAIFGGFGNLLPPLIGARDLAFPRLNNLSFWLFPPGLLLLLSSVLVGGGAGTGWTFY 117
Query: 184 PPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAF 243
PPLS +SYS GVGVD I GL +AG+ + L IN + TI+ MR PGMT+ KMP+FVW+
Sbjct: 118 PPLSTLSYSSGVGVDLAILGLHLAGVSSILGAINFITTILNMRAPGMTLDKMPLFVWSVL 177
Query: 244 CSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLP 303
+ I+++ A P+L A L +L LDR GT+FF GG+P++Y +L W +GHPEVYIL+LP
Sbjct: 178 VTAILLLLALPVLAAALVMLLLDRNFGTSFFDPAGGGDPVLYQHLFWFFGHPEVYILILP 237
Query: 304 AFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTM 363
AFG SE++ TFSGK LFGY MVYA LAI LS+ VW HH FT+G + A+F TM
Sbjct: 238 AFGAISEIIPTFSGKPLFGYKLMVYAFLAIGFLSFLVWAHHMFTVGLPVDTRAYFTAATM 297
Query: 364 VIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNS 423
+IAVPTG K+FNWL T+ G++RF+ PM++ LGF+ F IGG+TGV+LA P D LH++
Sbjct: 298 IIAVPTGIKVFNWLATLWGGRIRFDPPMLFALGFLFLFTIGGLTGVVLANVPLDIVLHDT 357
Query: 424 LFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYA 483
++VAHFH + GGVVF +FAG+ YWFPK G L+ GK+ FW WF+GF L F P++
Sbjct: 358 YYVVAHFHYVLSGGVVFAIFAGLYYWFPKMTGRMLSEKLGKIHFWLWFIGFNLTFFPMHF 417
Query: 484 LGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSF 530
LGL G+ RR + Y D + ++ +GA ++G+G+ F+ + +S
Sbjct: 418 LGLLGMPRRYADYPD-GFAPWNFISSVGAFILGLGLLLFLGNLFLSL 463
>gnl|CDD|29934 cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I.
Cytochrome c oxidase (CcO), the terminal oxidase in the
respiratory chains of eukaryotes and most bacteria, is a
multi-chain transmembrane protein located in the inner
membrane of mitochondria and the cell membrane of
prokaryotes. It catalyzes the reduction of O2 and
simultaneously pumps protons across the membrane. The
number of subunits varies from three to five in bacteria
and up to 13 in mammalian mitochondria. Only subunits I
and II are essential for function, but subunit III,
which is also conserved, may play a role in assembly or
oxygen delivery to the active site. Subunits I, II, and
III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Subunit I contains a
heme-copper binuclear center (the active site where O2
is reduced to water) formed by a high-spin heme (heme
a3) and a copper ion (CuB). It also contains a low-spin
heme (heme a), believed to participate in the transfer
of electrons to the binuclear center. For every
reduction of an O2 molecule, eight protons are taken
from the inside aqueous compartment and four electrons
are taken from cytochrome c on the opposite side of the
membrane. The four electrons and four of the protons
are used in the reduction of O2; the four remaining
protons are pumped across the membrane. This charge
separation of four charges contributes to the
electrochemical gradient used for ATP synthesis. Two
proton channels, the D-pathway and K-pathway, leading to
the binuclear center have been identified in subunit I.
A well-defined pathway for the transfer of pumped
protons beyond the binuclear center has not been
identified. Electrons are transferred from cytochrome c
(the electron donor) to heme a via the CuA binuclear
site in subunit II, and directly from heme a to the
binuclear center..
Length = 488
Score = 442 bits (1139), Expect = e-124
Identities = 210/494 (42%), Positives = 303/494 (61%), Gaps = 8/494 (1%)
Query: 62 VDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMI 121
+HK IG +Y+I L G + ++++RL+ S G + Y+ I TAH +IMI
Sbjct: 1 TNHKDIGTLYLIFGLWSGLVGTSLSLLIRLE---LSQPGSQLGNDQLYNVIVTAHALIMI 57
Query: 122 FFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGW 180
FF+ MP +I G N++VPL IGA D++FP LNN SFW+ ++++ S + A GW
Sbjct: 58 FFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALVEGGAGTGW 117
Query: 181 LAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVW 240
YPPLS I G VD I+ L +AGI + L IN + TI MR PGMT+ KMP+FVW
Sbjct: 118 TVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGMTLEKMPLFVW 177
Query: 241 TAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL 300
+ + +++ + P+L + +L DR T+FF GG+P++Y +L W +GHPEVYIL
Sbjct: 178 SVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFWFFGHPEVYIL 237
Query: 301 VLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFG 359
+LP FGI S +++TFSGK+ +FGY MVYA L+I IL + VW HH FT+G + A+F
Sbjct: 238 ILPGFGIISHIISTFSGKKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDVDTRAYFT 297
Query: 360 IMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFT 419
TM+IAVPTG K+F+WL TM G ++FE PM+W LGF+ F IGG+TGV+LA D
Sbjct: 298 AATMIIAVPTGIKVFSWLATMWGGSIKFETPMLWALGFIFLFTIGGLTGVVLANSSLDIA 357
Query: 420 LHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFM 479
LH++ ++VAHFH + G VF +FAG YWFPK G N GK+ FW F+G L F
Sbjct: 358 LHDTYYVVAHFHYVLSMGAVFAIFAGFYYWFPKITGLSYNETLGKIHFWLMFIGVNLTFF 417
Query: 480 PLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDT 539
P + LGL G+ RR Y D + +++ +G+++ + V F+ SF++ K+
Sbjct: 418 PQHFLGLAGMPRRYPDYPD-AYAGWNMISSIGSLISFVSVLLFLFIVWESFVSGRKVIFN 476
Query: 540 IGDPWDGRTLEWSI 553
+G+ +LEW++
Sbjct: 477 VGEGST--SLEWTL 488
>gnl|CDD|143891 pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
Length = 444
Score = 423 bits (1090), Expect = e-119
Identities = 216/455 (47%), Positives = 296/455 (65%), Gaps = 14/455 (3%)
Query: 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFF 123
HK+IG++Y++ +LV G +++RLQ A Y+Q+ T HG +MIF+
Sbjct: 1 HKQIGLLYLVTALVFFLIGGILGLLIRLQLAFPDFLS----PDATYNQLRTLHGNLMIFW 56
Query: 124 VAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG-EFASVGWLA 182
AMP + G+ N++VPL +GARD++FP LN SFW+ V G ++ + SL +G GW
Sbjct: 57 WAMPALIGLGNYLVPLMLGARDLAFPRLNALSFWLLVVGGLLALVSLLLGGGAPGRGWTE 116
Query: 183 YPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTA 242
YPPLS S SP VD +I GL + GIG+ L IN +VTI+K R PGMT+ +MP+FVW+
Sbjct: 117 YPPLSSTSSSP---VDLWILGLLLVGIGSLLGAINFIVTILKRRAPGMTLSRMPLFVWSL 173
Query: 243 FCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVL 302
+ I+I+ AFP+L L +L LDR GT+FF GG+P++Y +L W +GHPEVYIL+L
Sbjct: 174 LATAILILFAFPVLAVALLMLLLDRNFGTSFF----GGDPLLYQHLFWFFGHPEVYILIL 229
Query: 303 PAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMT 362
PAFGI S ++ FSGK LFGY MV A AI +LS+ VW HH FT G AFF + +
Sbjct: 230 PAFGIVSYILPKFSGKPLFGYKWMVLAFWAIALLSFLVWGHHMFTSGLPPWWRAFFSVFS 289
Query: 363 MVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHN 422
M+IA+PTG K+FNWL T+ G++RF PM++ LGF++ F IGG+TGVLLA+PP D+ LH+
Sbjct: 290 MLIAIPTGLKVFNWLATLWGGRIRFNPPMLFALGFIVLFTIGGLTGVLLALPPVDYYLHD 349
Query: 423 SLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLY 482
+ F+VAHFH + GG VF LFAGI YWFPK G N GK+ FW F+GF L F PL+
Sbjct: 350 TYFVVAHFHYVLYGGAVFALFAGIYYWFPKLTGRMYNERLGKLHFWLLFIGFNLTFFPLH 409
Query: 483 ALGLKGVTRRLSQYEDTTLQ--VYYVVALLGAVLI 515
GL G+ RR+ Y + + ++ +G L+
Sbjct: 410 IAGLLGMPRRVPDYPPSVFALEPWNLLRTIGGFLM 444
Score = 28.4 bits (64), Expect = 6.9
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 391 MMWTLGFMITFLIGGMTGVLLAVPPA--DFTLHNSLF---LVAHFHNTIIGGVVFGLFAG 445
+++ + ++ FLIGG+ G+L+ + A DF ++ + H + I + L
Sbjct: 6 LLYLVTALVFFLIGGILGLLIRLQLAFPDFLSPDATYNQLRTLHGNLMIFWWAMPALIGL 65
Query: 446 IVYWFPKAFGYQLNSF--WGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQV 503
Y P G + +F +SFW VG LA + L G ++
Sbjct: 66 GNYLVPLMLGARDLAFPRLNALSFWLLVVGGLLALVSLLLGGGAPGRGWTEYPPLSSTSS 125
Query: 504 YYVV-ALLGAVLIGIGVFSFVLSFIVSFLNR 533
V +LG +L+GIG ++FIV+ L R
Sbjct: 126 SPVDLWILGLLLVGIGSLLGAINFIVTILKR 156
>gnl|CDD|177260 MTH00223, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 512
Score = 390 bits (1004), Expect = e-109
Identities = 193/515 (37%), Positives = 297/515 (57%), Gaps = 9/515 (1%)
Query: 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTA 115
W S +HK IG +Y+I + G + ++++R + G D Y+ I TA
Sbjct: 1 MRWLFSTNHKDIGTLYLIFGMWSGLVGTSLSLLIRAELGQP---GALLGDDQLYNVIVTA 57
Query: 116 HGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGE 174
H +MIFF+ MP MI G N++VPL +GA D++FP LNN SFW+ +++ S +
Sbjct: 58 HAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPSLYLLLSSSAVES 117
Query: 175 FASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMK 234
GW YPPLS G VD I+ L +AG+ + L IN + TII MR PGM + +
Sbjct: 118 GVGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSPGMQLER 177
Query: 235 MPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294
+P+FVW+ + +++ + P+L + +L DR T+FF GG+P++Y +L W +GH
Sbjct: 178 LPLFVWSVKVTAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFWFFGH 237
Query: 295 PEVYILVLPAFGIFSEVVATFSGK-RLFGYNSMVYATLAITILSYTVWLHHFFTMGSGAN 353
PEVYIL+LP FG+ S +V+ +S K +FG M+YA L+I +L + VW HH FT+G +
Sbjct: 238 PEVYILILPGFGMISHIVSHYSSKKEVFGTLGMIYAMLSIGVLGFIVWAHHMFTVGMDVD 297
Query: 354 VNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAV 413
A+F TM+IAVPTG K+F+WL T+ K+++E PM+W LGF+ F +GG+TG++L+
Sbjct: 298 TRAYFTAATMIIAVPTGIKVFSWLATIYGSKIKYEAPMLWALGFIFLFTVGGLTGIILSN 357
Query: 414 PPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVG 473
D LH++ ++VAHFH + G VF LFAG +WFP G L+ W K F+ F+G
Sbjct: 358 SSLDIMLHDTYYVVAHFHYVLSMGAVFALFAGFNHWFPLFTGVTLHRRWAKAHFFLMFLG 417
Query: 474 FYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533
L F P + LGL G+ RR S Y D + + V+ G+++ + V F+ +F+++
Sbjct: 418 VNLTFFPQHFLGLAGMPRRYSDYPDCYTK-WNQVSSFGSMISFVSVLFFMFIVWEAFVSQ 476
Query: 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIV 568
+ + +LEW P+ +N + T +
Sbjct: 477 RSVVWSGHLS---TSLEWDNLLPADFHNNSETGAL 508
>gnl|CDD|177235 MTH00184, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 519
Score = 388 bits (999), Expect = e-108
Identities = 208/516 (40%), Positives = 306/516 (59%), Gaps = 6/516 (1%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
W S +HK IG +Y++ G A ++++RL+ S G D H Y+ I TAH
Sbjct: 8 WLFSTNHKDIGTLYLLFGAFAGMIGTAFSMLIRLE---LSAPGSMLGDDHLYNVIVTAHA 64
Query: 118 VIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA 176
+MIFF+ MP MI G N+ VPL IGA D++FP LNN SFW+ +++ S F+ + A
Sbjct: 65 FVMIFFLVMPVMIGGFGNWFVPLYIGAPDMAFPRLNNISFWLLPPALTLLLGSAFVEQGA 124
Query: 177 SVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMP 236
GW YPPLS I G VD I+ L +AGI + L +N + TI MR PG+TM +MP
Sbjct: 125 GTGWTVYPPLSSIQAHSGGSVDMAIFSLHLAGISSILGAMNFITTIFNMRAPGITMDRMP 184
Query: 237 VFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPE 296
+FVW+ + +++ + P+L + +L DR T FF GG+P++Y +L W +GHPE
Sbjct: 185 LFVWSILVTTFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPE 244
Query: 297 VYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVN 355
VYIL+LP FGI S+++ TF+ K+ +FGY MVYA ++I IL + VW HH FT+G +
Sbjct: 245 VYILILPGFGIISQIIPTFAAKKQIFGYLGMVYAMVSIGILGFIVWAHHMFTVGMDVDTR 304
Query: 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPP 415
A+F TM+IAVPTG KIF+W+ T+ G +R + PM+W +GF+ F +GG+TG++LA
Sbjct: 305 AYFTAATMIIAVPTGIKIFSWIATIFGGSLRLDTPMLWAIGFVFLFTMGGLTGIVLANSS 364
Query: 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFY 475
D LH++ ++VAHFH + G VF +F G YWF K GY N +GK+ FW F+G
Sbjct: 365 LDVVLHDTYYVVAHFHYVLSMGAVFAIFGGFYYWFGKITGYCYNEVYGKIHFWLMFIGVN 424
Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535
L F P + LGL G+ RR S + D + + ++ LG+V+ +GV F+ +++ K
Sbjct: 425 LTFFPQHFLGLAGLPRRYSDFHD-SFAGWNQISSLGSVISIVGVVWFIYIVYDAYVREIK 483
Query: 536 LQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVSTI 571
+ D +LEW+ +SP + + P V
Sbjct: 484 FVGWVEDSGHYPSLEWAQTSPPAHHTYNELPYVYKG 519
>gnl|CDD|177233 MTH00182, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 525
Score = 385 bits (990), Expect = e-107
Identities = 207/517 (40%), Positives = 303/517 (58%), Gaps = 7/517 (1%)
Query: 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFT 114
W S +HK IG +Y++ G A ++++RL+ S G D H Y+ I T
Sbjct: 5 LTRWVFSTNHKDIGTLYLVFGAGAGMIGTAFSMLIRLE---LSAPGAMLGDDHLYNVIVT 61
Query: 115 AHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG 173
AH IMIFF+ MP MI G N++VPL IGA D++FP LNN SFW+ ++++ S F+
Sbjct: 62 AHAFIMIFFLVMPVMIGGFGNWLVPLYIGAPDMAFPRLNNISFWLLPPALILLLGSAFVE 121
Query: 174 EFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMM 233
+ A GW YPPLS I G VD I+ L +AG+ + L IN + TI MR PG+T
Sbjct: 122 QGAGTGWTVYPPLSSIQAHSGGAVDMAIFSLHLAGVSSILGAINFITTIFNMRAPGVTFN 181
Query: 234 KMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293
++P+FVW+ + +++ + P+L + +L DR T FF GG+P+++ +L W +G
Sbjct: 182 RLPLFVWSILITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILFQHLFWFFG 241
Query: 294 HPEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGA 352
HPEVYIL+LP FG+ S+++ TF K+ +FGY MVYA L+I IL + VW HH FT+G
Sbjct: 242 HPEVYILILPGFGMISQIIPTFVAKKQIFGYLGMVYAMLSIGILGFIVWAHHMFTVGMDV 301
Query: 353 NVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLA 412
+ A+F TM+IAVPTG K+F+WL T+ G +R + PM+W +GF+ F +GG+TGV+LA
Sbjct: 302 DTRAYFTAATMIIAVPTGIKVFSWLATIYGGTLRLDTPMLWAMGFVFLFTLGGLTGVVLA 361
Query: 413 VPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFV 472
D LH++ ++VAHFH + G VF +F G YWF K GY N +GK+ FW F+
Sbjct: 362 NSSLDIVLHDTYYVVAHFHYVLSMGAVFAIFGGFYYWFGKITGYCYNELYGKIHFWLMFI 421
Query: 473 GFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532
G L F P + LGL G RR S + D + +V+ LG+++ +GV F+ +++
Sbjct: 422 GVNLTFFPQHFLGLAGFPRRYSDFAD-AFAGWNLVSSLGSIISIVGVVWFIYIIYDAYVR 480
Query: 533 RSKLQDTIGDPWDG-RTLEWSISSPSPQYNFAFTPIV 568
K + +LEW SSP + + P V
Sbjct: 481 EEKFIGWKEGTGESWASLEWVHSSPPLFHTYNELPFV 517
>gnl|CDD|177222 MTH00167, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 512
Score = 384 bits (987), Expect = e-107
Identities = 203/513 (39%), Positives = 301/513 (58%), Gaps = 9/513 (1%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
W S +HK IG +Y I G A ++++R + S G D Y+ I TAH
Sbjct: 6 WLFSTNHKDIGTLYFIFGAWAGMVGTALSLLIRAE---LSQPGSLLGDDQIYNVIVTAHA 62
Query: 118 VIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA 176
+MIFF+ MP MI G N++VPL IGA D++FP +NN SFW+ ++++ S + A
Sbjct: 63 FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASSGVEAGA 122
Query: 177 SVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMP 236
GW YPPL+G G VD I+ L +AG+ + L IN + TII M+ PG+T + P
Sbjct: 123 GTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGSINFITTIINMKPPGITQYQTP 182
Query: 237 VFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPE 296
+FVW+ + I+++ + P+L A + +L DR + T FF GG+P++Y +L W +GHPE
Sbjct: 183 LFVWSILVTTILLLLSLPVLAAAITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPE 242
Query: 297 VYILVLPAFGIFSEVVATFSGK-RLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVN 355
VYIL+LP FG+ S +V +SGK FGY MV+A +AI +L + VW HH FT+G +
Sbjct: 243 VYILILPGFGMISHIVVYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTR 302
Query: 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPP 415
A+F TM+IAVPTG K+F+WL T+ GK+++E PM+W LGF+ F +GG+TG++LA
Sbjct: 303 AYFTSATMIIAVPTGIKVFSWLATLHGGKIKWETPMLWALGFIFLFTVGGLTGIVLANSS 362
Query: 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFY 475
D LH++ ++VAHFH + G VF + AG +WFP G LN W K+ F+ F+G
Sbjct: 363 LDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGLTLNETWTKIHFFVMFIGVN 422
Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535
L F P + LGL G+ RR S Y D ++ VV+ +G+++ + V F+ +F ++ K
Sbjct: 423 LTFFPQHFLGLAGMPRRYSDYPDAYT-LWNVVSSIGSLISLVAVILFLFIIWEAFSSKRK 481
Query: 536 LQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIV 568
L + +EW P P + + P V
Sbjct: 482 L---LPVELTSTNVEWLHGCPPPHHTWEEPPFV 511
>gnl|CDD|177177 MTH00116, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 515
Score = 382 bits (982), Expect = e-106
Identities = 193/515 (37%), Positives = 291/515 (56%), Gaps = 9/515 (1%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
W S +HK IG +Y+I G A ++++R + G D Y+ I TAH
Sbjct: 6 WLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAE---LGQPGTLLGDDQIYNVIVTAHA 62
Query: 118 VIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA 176
+MIFF+ MP MI G N++VPL IGA D++FP +NN SFW+ ++++ S + A
Sbjct: 63 FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGA 122
Query: 177 SVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMP 236
GW YPPL+G G VD I+ L +AG+ + L IN + T I M+ P M+ + P
Sbjct: 123 GTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTCINMKPPAMSQYQTP 182
Query: 237 VFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPE 296
+FVW+ + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +GHPE
Sbjct: 183 LFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPE 242
Query: 297 VYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVN 355
VYIL+LP FGI S +V ++GK+ FGY MV+A L+I L + VW HH FT+G +
Sbjct: 243 VYILILPGFGIISHIVTYYAGKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTR 302
Query: 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPP 415
A+F TM+IA+PTG K+F+WL T+ G ++++ PM+W LGF+ F IGG+TG++LA
Sbjct: 303 AYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIVLANSS 362
Query: 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFY 475
D LH++ ++VAHFH + G VF + AG +WFP GY L+ W K F F G
Sbjct: 363 LDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFTHWFPLFTGYTLHQTWTKAQFGVMFTGVN 422
Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535
L F P + LGL G+ RR S Y D ++ ++ +G+++ V + +F ++ K
Sbjct: 423 LTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTISSIGSLISMTAVIMLMFIIWEAFSSKRK 481
Query: 536 LQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVST 570
+ +EW P P + F V
Sbjct: 482 VLQPELTT---TNIEWIHGCPPPYHTFEEPAFVQV 513
>gnl|CDD|177200 MTH00142, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 381 bits (980), Expect = e-106
Identities = 201/515 (39%), Positives = 298/515 (57%), Gaps = 9/515 (1%)
Query: 56 KEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTA 115
W S +HK IG +Y + G ++++R + G D Y+ I TA
Sbjct: 2 MRWLFSTNHKDIGTLYFLFGAWAGMVGTGLSLLIRAELGQP---GSLLGDDQLYNVIVTA 58
Query: 116 HGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGE 174
H +MIFF+ MP MI G N++VPL +GA D++FP +NN SFW+ ++++ S +
Sbjct: 59 HAFVMIFFMVMPVMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPALLLLLSSAAVES 118
Query: 175 FASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMK 234
A GW YPPLS G VD I+ L +AG+ + L IN + T+I MR GM +
Sbjct: 119 GAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVSSILGAINFITTVINMRAGGMKFER 178
Query: 235 MPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294
+P+FVW+ + I+++ + P+L + +L DR T+FF GG+P++Y +L W +GH
Sbjct: 179 VPLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLFWFFGH 238
Query: 295 PEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGAN 353
PEVYIL+LP FG+ S ++ +SGK+ +FG M+YA L+I +L + VW HH FT+G +
Sbjct: 239 PEVYILILPGFGMISHIINHYSGKKEVFGTLGMIYAMLSIGLLGFIVWAHHMFTVGMDVD 298
Query: 354 VNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAV 413
A+F TMVIAVPTG K+F+WL T+ KV++E PM+W LGF+ F +GG+TG++LA
Sbjct: 299 TRAYFTAATMVIAVPTGIKVFSWLATLHGSKVKYEPPMLWALGFIFLFTVGGLTGIVLAN 358
Query: 414 PPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVG 473
D LH++ ++VAHFH + G VF LFAG ++WFP G LN W K F+ F+G
Sbjct: 359 SSLDVVLHDTYYVVAHFHYVLSMGAVFALFAGFIHWFPLFTGLTLNPRWLKAHFYTMFIG 418
Query: 474 FYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533
L F P + LGL G+ RR S Y D + VV+ LG+++ I V FV SF+++
Sbjct: 419 VNLTFFPQHFLGLAGMPRRYSDYPD-AYTTWNVVSSLGSMISFIAVLMFVFIVWESFVSQ 477
Query: 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIV 568
+ + +LEWS P + + PI+
Sbjct: 478 ---RLVMWSSHLSTSLEWSHRLPPDFHTYDELPIL 509
>gnl|CDD|177210 MTH00153, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 369 bits (950), Expect = e-102
Identities = 195/516 (37%), Positives = 301/516 (58%), Gaps = 13/516 (2%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYL--DAHHYDQIFTA 115
W S +HK IG +Y I G + ++++R + G G L D Y+ I TA
Sbjct: 4 WLFSTNHKDIGTLYFIFGAWSGMVGTSLSLLIRAEL-----GQPGSLIGDDQIYNVIVTA 58
Query: 116 HGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGE 174
H IMIFF+ MP MI G N++VPL +GA D++FP +NN SFW+ +++ S +
Sbjct: 59 HAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLLSSSMVES 118
Query: 175 FASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMK 234
A GW YPPLS G VD I+ L +AGI + L IN + TII MR GMT+ +
Sbjct: 119 GAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGMTLDR 178
Query: 235 MPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294
MP+FVW+ + I+++ + P+L + +L DR + T+FF GG+P++Y +L W +GH
Sbjct: 179 MPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGH 238
Query: 295 PEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGAN 353
PEVYIL+LP FG+ S +++ SGK+ FG M+YA LAI +L + VW HH FT+G +
Sbjct: 239 PEVYILILPGFGMISHIISQESGKKETFGTLGMIYAMLAIGLLGFIVWAHHMFTVGMDVD 298
Query: 354 VNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAV 413
A+F TM+IAVPTG KIF+WL T+ ++ + ++W LGF+ F IGG+TGV+LA
Sbjct: 299 TRAYFTSATMIIAVPTGIKIFSWLATLHGSQINYSPSLLWALGFVFLFTIGGLTGVVLAN 358
Query: 414 PPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVG 473
D LH++ ++VAHFH + G VF + G ++WFP G +N W K+ F+ F+G
Sbjct: 359 SSIDIILHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFTGLTMNPKWLKIQFFIMFIG 418
Query: 474 FYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533
L F P + LGL G+ RR S Y D + V++ +G+ + I + F+ S +++
Sbjct: 419 VNLTFFPQHFLGLAGMPRRYSDYPDAYT-SWNVISSIGSTISLISILFFIFIIWESMISK 477
Query: 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVS 569
+ ++ ++EW + P +++++ P+++
Sbjct: 478 RPVLFSLNLS---SSIEWLQNLPPAEHSYSELPLLT 510
>gnl|CDD|177112 MTH00037, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 517
Score = 365 bits (938), Expect = e-101
Identities = 205/514 (39%), Positives = 303/514 (58%), Gaps = 10/514 (1%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
W S +HK IG +Y+I G A ++++R + A G D Y+ I TAH
Sbjct: 6 WLFSTNHKDIGTLYLIFGAWAGMVGTAMSVIIRTELAQP---GSLLQDDQIYNVIVTAHA 62
Query: 118 VIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA 176
++MIFF+ MP MI G N+++PL IGA D++FP +NN SFW+ ++++ S + A
Sbjct: 63 LVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLIPPSFLLLLASAGVESGA 122
Query: 177 SVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMP 236
GW YPPLS G VD I+ L +AG + L+ IN + TII MR PGMT ++P
Sbjct: 123 GTGWTIYPPLSSNIAHAGGSVDLAIFSLHLAGASSILASINFITTIINMRTPGMTFDRLP 182
Query: 237 VFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPE 296
+FVW+ F + +++ + P+L + +L DR I T FF GG+P+++ +L W +GHPE
Sbjct: 183 LFVWSVFITAFLLLLSLPVLAGAITMLLTDRNINTTFFDPAGGGDPILFQHLFWFFGHPE 242
Query: 297 VYILVLPAFGIFSEVVATFSGKRL-FGYNSMVYATLAITILSYTVWLHHFFTMGSGANVN 355
VYIL+LP FG+ S V+A +SGK+ FGY MVYA +AI IL + VW HH FT+G +
Sbjct: 243 VYILILPGFGMISHVIAHYSGKQEPFGYLGMVYAMIAIGILGFLVWAHHMFTVGMDVDTR 302
Query: 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPP 415
A+F TM+IAVPTG K+F+W+ T++ +R+E P++W LGF+ F IGG+TG++LA
Sbjct: 303 AYFTAATMIIAVPTGIKVFSWMATLQGSNLRWETPLLWALGFVFLFTIGGLTGIVLANSS 362
Query: 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFY 475
D LH++ ++VAHFH + G VF +FAG +WFP G L+ W KV F+ F+G
Sbjct: 363 IDVVLHDTYYVVAHFHYVLSMGAVFAIFAGFTHWFPLFSGVSLHPLWSKVHFFLMFIGVN 422
Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535
L F P + LGL G+ RR S Y D ++ V+ +G+ + + F+ +F ++ +
Sbjct: 423 LTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSTISLVATLFFLFLIWEAFASQRE 481
Query: 536 LQDTIGDPWDGRTLEWSISSPSPQ-YNFAFTPIV 568
I + +LEW SS P + F TP
Sbjct: 482 ---VISPEFSSSSLEWQYSSFPPSHHTFDETPST 512
>gnl|CDD|177148 MTH00079, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 508
Score = 361 bits (928), Expect = e-100
Identities = 186/481 (38%), Positives = 281/481 (58%), Gaps = 7/481 (1%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
W S +HK IG +Y + L G + ++++RL+ S G + Y+ + TAH
Sbjct: 7 WLESSNHKDIGTLYFLFGLWSGMVGTSLSLIIRLE---LSKPGLLLGNGQLYNSVITAHA 63
Query: 118 VIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA 176
++MIFF+ MP MI G N+++PL +GA D+SFP LNN SFW+ +I+ S F+
Sbjct: 64 ILMIFFMVMPSMIGGFGNWMLPLMLGAPDMSFPRLNNLSFWLLPTSLFLILDSCFVDMGP 123
Query: 177 SVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMP 236
W YPPLS + + PG VD I+ L AGI + L GIN +VT +R +++ M
Sbjct: 124 GTSWTVYPPLSTLGH-PGSSVDLAIFSLHCAGISSILGGINFMVTTKNLRSSSISLEHMS 182
Query: 237 VFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPE 296
+FVWT F + +++ + P+L + +L DR + T+FF GGNP++Y +L W +GHPE
Sbjct: 183 LFVWTVFVTVFLLVLSLPVLAGAITMLLTDRNLNTSFFDPSTGGNPLLYQHLFWFFGHPE 242
Query: 297 VYILVLPAFGIFSEVVATFSGK-RLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVN 355
VYIL+LPAFGI S+ +GK +FG MVYA L+I ++ VW HH +T+G +
Sbjct: 243 VYILILPAFGIISQSTLYLTGKKEVFGSLGMVYAILSIGLIGCVVWAHHMYTVGMDLDSR 302
Query: 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPP 415
A+F TMVIAVPTG K+F+WL T+ K++F+ ++W LGF+ F IGG+TGV+L+
Sbjct: 303 AYFTAATMVIAVPTGVKVFSWLATLFGMKMKFQPLLLWVLGFIFLFTIGGLTGVILSNSS 362
Query: 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFY 475
D LH++ ++V+HFH + G VFG+F GI W+P G + F+ FVG
Sbjct: 363 LDIILHDTYYVVSHFHYVLSLGAVFGIFTGISLWWPFMTGIVYDKLMMSAVFFLMFVGVN 422
Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535
L F PL+ GL G+ R+ Y D V+ V++ G+++ +F F+ + SF +
Sbjct: 423 LTFFPLHFAGLHGMPRKYLDYPDVYS-VWNVISSYGSMISVFALFLFIYVLLESFFSYRL 481
Query: 536 L 536
+
Sbjct: 482 V 482
>gnl|CDD|177234 MTH00183, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 516
Score = 351 bits (903), Expect = 3e-97
Identities = 196/507 (38%), Positives = 298/507 (58%), Gaps = 9/507 (1%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
WF S +HK IG +Y++ G A ++++R A S G D Y+ I TAH
Sbjct: 6 WFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIR---AELSQPGALLGDDQIYNVIVTAHA 62
Query: 118 VIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA 176
+MIFF+ MP MI G N+++PL IGA D++FP +NN SFW+ ++++ S + A
Sbjct: 63 FVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGA 122
Query: 177 SVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMP 236
GW YPPL+G G VD I+ L +AG+ + L IN + TII M+ P ++ + P
Sbjct: 123 GTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAISQYQTP 182
Query: 237 VFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPE 296
+FVW + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +GHPE
Sbjct: 183 LFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPE 242
Query: 297 VYILVLPAFGIFSEVVATFSGKRL-FGYNSMVYATLAITILSYTVWLHHFFTMGSGANVN 355
VYIL+LP FG+ S +VA +SGK+ FGY MV+A +AI +L + VW HH FT+G +
Sbjct: 243 VYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTR 302
Query: 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPP 415
A+F TM+IA+PTG K+F+WL T+ G +++E P++W LGF+ F +GG+TG++LA
Sbjct: 303 AYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSS 362
Query: 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFY 475
D LH++ ++VAHFH + G VF + A V+WFP GY L+S W K+ F FVG
Sbjct: 363 LDIVLHDTYYVVAHFHYVLSMGAVFAIMAAFVHWFPLFSGYTLHSTWTKIHFGVMFVGVN 422
Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535
L F P + LGL G+ RR S Y D ++ V+ +G+++ + V F+ +F + +
Sbjct: 423 LTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSLISLVAVIMFLFILWEAFAAKRE 481
Query: 536 LQDTIGDPWDGRTLEWSISSPSPQYNF 562
+ +EW P P + F
Sbjct: 482 VLSV---ELTSTNVEWLHGCPPPYHTF 505
>gnl|CDD|177165 MTH00103, COX1, cytochrome c oxidase subunit I; Validated.
Length = 513
Score = 348 bits (893), Expect = 4e-96
Identities = 195/509 (38%), Positives = 293/509 (57%), Gaps = 13/509 (2%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYL--DAHHYDQIFTA 115
W S +HK IG +Y++ G A ++++R A G G L D Y+ I TA
Sbjct: 6 WLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIR-----AELGQPGTLLGDDQIYNVIVTA 60
Query: 116 HGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGE 174
H +MIFF+ MP MI G N++VPL IGA D++FP +NN SFW+ ++++ S +
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 175 FASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMK 234
A GW YPPL+G G VD I+ L +AG+ + L IN + TII M+ P M+ +
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180
Query: 235 MPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGH 294
P+FVW+ + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +GH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 295 PEVYILVLPAFGIFSEVVATFSGKRL-FGYNSMVYATLAITILSYTVWLHHFFTMGSGAN 353
PEVYIL+LP FG+ S +V +SGK+ FGY MV+A ++I L + VW HH FT+G +
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300
Query: 354 VNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAV 413
A+F TM+IA+PTG K+F+WL T+ G +++ M+W LGF+ F +GG+TG++LA
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLAN 360
Query: 414 PPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVG 473
D LH++ ++VAHFH + G VF + G V+WFP GY LN W K+ F FVG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFTIMFVG 420
Query: 474 FYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNR 533
+ F P + LGL G+ RR S Y D + V+ +G+ + V + +F ++
Sbjct: 421 VNMTFFPQHFLGLSGMPRRYSDYPD-AYTTWNTVSSMGSFISLTAVMLMIFMIWEAFASK 479
Query: 534 SKLQDTIGDPWDGRTLEWSISSPSPQYNF 562
++ T+ LEW P P + F
Sbjct: 480 REVL-TVELT--TTNLEWLHGCPPPYHTF 505
>gnl|CDD|133649 MTH00007, COX1, cytochrome c oxidase subunit I; Validated.
Length = 511
Score = 345 bits (886), Expect = 3e-95
Identities = 192/516 (37%), Positives = 298/516 (57%), Gaps = 11/516 (2%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHH-YDQIFTAH 116
W S +HK IG +Y IL + G + ++++R++ G +L + Y+ I TAH
Sbjct: 3 WLYSTNHKDIGTLYFILGVWGGLLGTSMSLLIRIEL----GQPGAFLGSDQLYNTIVTAH 58
Query: 117 GVIMIFFVAMPM-ITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEF 175
+MIFF+ MP+ I G N++VPL +GA D++FP LNN SFW+ ++++ S + +
Sbjct: 59 AFLMIFFLVMPVFIGGFGNWLVPLMLGAPDMAFPRLNNMSFWLLPPALILLVSSAAVEKG 118
Query: 176 ASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKM 235
GW YPPL+ G VD I+ L +AG+ + L IN + T+I MR G+ + ++
Sbjct: 119 VGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTVINMRWKGLRLERI 178
Query: 236 PVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHP 295
P+FVW + ++++ + P+L + +L DR + T+FF GG+P++Y +L W +GHP
Sbjct: 179 PLFVWAVVITVVLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHP 238
Query: 296 EVYILVLPAFGIFSEVVATFSGK-RLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANV 354
EVYIL+LP FG S +V ++GK FG M+YA L I +L + VW HH FT+G +
Sbjct: 239 EVYILILPGFGAISHIVTHYAGKLEPFGTLGMIYAMLGIGVLGFIVWAHHMFTVGMDVDT 298
Query: 355 NAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVP 414
A+F TM+IAVPTG K+F+WL T+ +++E PM+W LGF+ F GG+TG++L+
Sbjct: 299 RAYFTAATMIIAVPTGIKVFSWLATIHGSPIKYETPMLWALGFIFLFTTGGLTGIVLSNS 358
Query: 415 PADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGF 474
D LH++ ++VAHFH + G VF +FA +WFP G L+ W K F+ F+G
Sbjct: 359 SLDIILHDTYYVVAHFHYVLSMGAVFAIFAAFNHWFPLFTGLTLHDRWAKAHFFLMFLGV 418
Query: 475 YLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRS 534
L F P + LGL G+ RR S Y D + + VV+ G++L + + F+ +F S
Sbjct: 419 NLTFFPQHFLGLSGMPRRYSDYPDAYTK-WNVVSSFGSMLSFVALLLFIFILWEAF---S 474
Query: 535 KLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVST 570
+ I P +LEW + P +N T I++T
Sbjct: 475 AQRGVIASPHMSSSLEWQDTLPLDFHNLPETGIITT 510
>gnl|CDD|164599 MTH00026, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 534
Score = 343 bits (881), Expect = 8e-95
Identities = 203/525 (38%), Positives = 304/525 (57%), Gaps = 18/525 (3%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
WF S +HK IG +Y++ + G A ++++RL+ S G D H Y+ I TAH
Sbjct: 7 WFFSCNHKDIGSLYLVFGALSGAIGTAFSMLIRLE---LSSPGSMLGDDHLYNVIVTAHA 63
Query: 118 VIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA 176
+MIFF+ MP MI G N+ VPL IGA D++FP LNN SFW+ +++ S + + A
Sbjct: 64 FVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGA 123
Query: 177 SVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMP 236
GW YPPL+ I G VD I+ L +AG+ + L +N + T++ MR PGMTM ++P
Sbjct: 124 GTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIP 183
Query: 237 VFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPE 296
+FVW+ F + I+++ + P+L + +L DR T FF GG+P++Y +L W +GHPE
Sbjct: 184 LFVWSVFITAILLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPE 243
Query: 297 VYILVLPAFGIFSEVVATFS-GKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVN 355
VYIL+LP FGI S++++ FS K++FGY MVYA LAI +L + VW HH + +G +
Sbjct: 244 VYILILPGFGIISQILSLFSYKKQIFGYLGMVYAMLAIGVLGFIVWAHHMYVVGMDVDTR 303
Query: 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAV 413
A+F TM+IAVPTG KIF+WL T+ + F PM W LGF+ F IGG+TG++L+
Sbjct: 304 AYFTAATMIIAVPTGIKIFSWLATVSGSGRNLIFTTPMAWALGFIFLFTIGGLTGIVLSN 363
Query: 414 PPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVG 473
D LH++ ++VAHFH + G VF +F G WF K GY +G + FW F+G
Sbjct: 364 SSLDILLHDTYYVVAHFHFVLSMGAVFAIFGGFYLWFGKITGYAYKDIYGLIHFWLMFIG 423
Query: 474 FYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVL--------- 524
+ F P + LGL G+ RR + Y D + + ++ G+++ I V F++
Sbjct: 424 VNITFFPQHFLGLAGLPRRYADYPD-NFEDFNQISSFGSIISIIAVIWFIVVIFDAYYRE 482
Query: 525 -SFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIV 568
F ++ + + L P TLEWS++SP + + P +
Sbjct: 483 EPFDINIMAKGPLIPFSCQPAHFDTLEWSLTSPPEHHTYNELPYI 527
>gnl|CDD|177147 MTH00077, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 514
Score = 342 bits (878), Expect = 2e-94
Identities = 191/507 (37%), Positives = 294/507 (57%), Gaps = 9/507 (1%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHG 117
W S +HK IG +Y++ G A ++++R A S G D Y+ I TAH
Sbjct: 6 WLFSTNHKDIGTLYLVFGAWAGMVGTALSLLIR---AELSQPGTLLGDDQIYNVIVTAHA 62
Query: 118 VIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFA 176
+MIFF+ MP MI G N++VPL IGA D++FP +NN SFW+ ++++ S + A
Sbjct: 63 FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGA 122
Query: 177 SVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMP 236
GW YPPL+G G VD I+ L +AG+ + L IN + T I M+ P M+ + P
Sbjct: 123 GTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTSINMKPPSMSQYQTP 182
Query: 237 VFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPE 296
+FVW+ + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +GHPE
Sbjct: 183 LFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGHPE 242
Query: 297 VYILVLPAFGIFSEVVATFSGKRL-FGYNSMVYATLAITILSYTVWLHHFFTMGSGANVN 355
VYIL+LP FG+ S +V +S K+ FGY MV+A ++I +L + VW HH FT+ +
Sbjct: 243 VYILILPGFGMISHIVTYYSAKKEPFGYMGMVWAMMSIGLLGFIVWAHHMFTVDLNVDTR 302
Query: 356 AFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPP 415
A+F TM+IA+PTG K+F+WL TM G ++++ M+W LGF+ F +GG+TG++LA
Sbjct: 303 AYFTSATMIIAIPTGVKVFSWLATMHGGAIKWDAAMLWALGFIFLFTVGGLTGIVLANSS 362
Query: 416 ADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFY 475
D LH++ ++VAHFH + G VF + G V+WFP GY L+S W K+ F F+G
Sbjct: 363 LDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLHSTWSKIHFGVMFIGVN 422
Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSK 535
L F P + LGL G+ RR S Y D ++ V+ +G+++ + V + +F ++ +
Sbjct: 423 LTFFPQHFLGLAGMPRRYSDYPD-AYTLWNTVSSIGSLISLVAVIMMMFIIWEAFSSKRE 481
Query: 536 LQDTIGDPWDGRTLEWSISSPSPQYNF 562
+ T +EW P P + F
Sbjct: 482 VLTT---ELTSTNIEWLHGCPPPYHTF 505
>gnl|CDD|177123 MTH00048, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 289 bits (742), Expect = 1e-78
Identities = 164/482 (34%), Positives = 268/482 (55%), Gaps = 28/482 (5%)
Query: 58 WFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHH-------YD 110
W ++DHK+IG++Y +L + F G + ++++RL +LD ++ Y+
Sbjct: 7 WLFTLDHKRIGVIYTLLGVWSGFVGLSLSLLIRLN----------FLDPYYNVISLDVYN 56
Query: 111 QIFTAHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCS 169
+ T HG+IMIFF MP +I G N+++PL +G D++ P LN S W+ V V ++ S
Sbjct: 57 FLITNHGIIMIFFFLMPVLIGGFGNYLLPLLLGLSDLNLPRLNALSAWLLVPSIVFLLLS 116
Query: 170 LFIGEFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPG 229
+ +G A VGW YPPLS +S GVD+ ++ L +AG+ + IN + TI
Sbjct: 117 MCLG--AGVGWTFYPPLSSSLFSSSWGVDFLMFSLHLAGVSSLFGSINFICTIYSAFMTN 174
Query: 230 MTMMKMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLI 289
+ + + +W+ ++I+++ + P+L A + +L DR G+ FF GG+P+++ ++
Sbjct: 175 VFS-RTSIILWSYLFTSILLLLSLPVLAAAITMLLFDRNFGSAFFDPLGGGDPVLFQHMF 233
Query: 290 WIWGHPEVYILVLPAFGIFSEVVATFSGK-RLFGYNSMVYATLAITILSYTVWLHHFFTM 348
W +GHPEVY+L+LP FGI S + + S FGY +V+A +I L VW HH FT+
Sbjct: 234 WFFGHPEVYVLILPGFGIISHICLSLSNNDDPFGYYGLVFAMFSIVCLGSVVWAHHMFTV 293
Query: 349 GSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMM-WTLGFMITFLIGGMT 407
G FF +TM+I VPTG K+F+WL+ + +VR P++ W + F++ F IGG+T
Sbjct: 294 GLDVKTAVFFSSVTMIIGVPTGIKVFSWLYMLLNSRVRKSDPVVWWVVSFIVLFTIGGVT 353
Query: 408 GVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSF 467
G++L+ D LH++ F+VAHFH + G + ++W+P G LN + +
Sbjct: 354 GIVLSASVLDNVLHDTWFVVAHFHYVLSLGSYSSVVIMFIWWWPLITGLSLNKYLLQCHC 413
Query: 468 WCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFS-FVLSF 526
+GF L F P++ GL G+ RR+ YE + YY + ++ V I FS F
Sbjct: 414 IISMIGFNLCFFPMHYFGLCGLPRRVCVYEPS----YYWINVVCTVGSFISAFSGCFFVF 469
Query: 527 IV 528
I+
Sbjct: 470 IL 471
>gnl|CDD|39966 KOG4769, KOG4769, KOG4769, Cytochrome c oxidase, subunit I [Energy
production and conversion].
Length = 182
Score = 132 bits (333), Expect = 3e-31
Identities = 72/209 (34%), Positives = 100/209 (47%), Gaps = 28/209 (13%)
Query: 120 MIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASV 178
MIFF+ MP I G N +VPL A D +FP LNN SFW + + + S + A
Sbjct: 1 MIFFLTMPENIGGFGNPLVPLIPCAGDGAFPRLNNDSFWDLPSALIALGDSACVEAGAGT 60
Query: 179 GWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVF 238
W YPPL+G G VD I+ L +AG + L +NL+ T I MR +++ +F
Sbjct: 61 RWTVYPPLAGNPSHAGASVDLAIFSLHLAGKSSCLGAVNLIGTTINMRTREKLQVRVTLF 120
Query: 239 VWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVY 298
VW+ + +++ P+L + +L DR N EVY
Sbjct: 121 VWSKSKTCKLLLLTLPVL-LDITMLFQDR----NS----------------------EVY 153
Query: 299 ILVLPAFGIFSEVVATFSGKRLFGYNSMV 327
IL+LP FGI S +V +S K FGY MV
Sbjct: 154 ILILPGFGIISHIVTYYSKKEPFGYMGMV 182
>gnl|CDD|29931 cd01660, ba3-like_Oxidase_I, ba3-like heme-copper oxidase subunit
I. The ba3 family of heme-copper oxidases are
transmembrane protein complexes in the respiratory
chains of prokaryotes and some archaea which catalyze
the reduction of O2 and simultaneously pump protons
across the membrane. It has been proposed that Archaea
acquired heme-copper oxidases through gene transfer from
Gram-positive bacteria. The ba3 family contains
oxidases that lack the conserved residues that form the
D- and K-pathways in CcO and ubiquinol oxidase. Instead
they contain a potential alternative K-pathway.
Additional proton channels have been proposed for this
family of oxidases but none have been identified
definitively. For general information on the
heme-copper oxidase superfamily, please see cd00919..
Length = 473
Score = 115 bits (289), Expect = 4e-26
Identities = 111/498 (22%), Positives = 199/498 (39%), Gaps = 58/498 (11%)
Query: 65 KKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFV 124
KK+ + + +++ + L G + LQ + +G Y Q T HGV++
Sbjct: 3 KKLALAHFVVAFLALLLG---GLFGLLQVLVRTGVFPLPSSGILYYQGLTLHGVLLAIVF 59
Query: 125 AMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYP 184
I G +V + + FW+ V G V+ + +G+ ASV + YP
Sbjct: 60 TTFFIMGFFYAIVARALLRSLFNRRLAW-AGFWLMVIGTVMAAVPILLGQ-ASVLYTFYP 117
Query: 185 PLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTII--KMRCPGMTMMKMPVFVWTA 242
PL +YI G + +G+ +SG + VT+ K PG K+P+ +
Sbjct: 118 PLQA-------HPLFYI-GAALVVVGSWISGFAMFVTLWRWKKANPGK---KVPLATFMV 166
Query: 243 FCSNIM-IIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILV 301
+ I+ ++A+ + LF L + + ++ L W +GHP VY +
Sbjct: 167 VTTMILWLVASLGVALEVLFQLLPWSLGLVD------TVDVLLSRTLFWWFGHPLVYFWL 220
Query: 302 LPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFT-MGSGANVNAFFGI 360
LPA+ + ++ +G +LF A + + S V HH F G G +
Sbjct: 221 LPAYIAWYTILPKIAGGKLFSDPLARLAFILFLLFSTPVGFHHQFADPGIGPGWKFIHMV 280
Query: 361 MTMVIAVPT-------------------GAKIFNWLFTMRLGKVRFEVPMMWTLGFMITF 401
+T ++A+P+ G +F W+ + G F + M+ F
Sbjct: 281 LTFMVALPSLLTAFTVFASLEIAGRLRGGKGLFGWIRALPWGDPMFLALFL----AMLMF 336
Query: 402 LIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWF-PKAFGYQLNS 460
+ GG G++ A ++ +HN+ ++ HFH +GG V F + YW P G +L +
Sbjct: 337 IPGGAGGIINASYQLNYVVHNTAWVPGHFH-LTVGGAVALTFMAVAYWLVPHLTGRELAA 395
Query: 461 FW-GKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQ------VYYVVALLGAV 513
W WFVG + ++ GL G RR ++ + L Y + +G
Sbjct: 396 KRLALAQPWLWFVGMTIMSTAMHVAGLLGAPRRTAEAQYGGLPAAGEWAPYQQLMAIGGT 455
Query: 514 LIGIGVFSFVLSFIVSFL 531
++ + F+ + L
Sbjct: 456 ILFVSGALFLYILFRTLL 473
>gnl|CDD|29932 cd01661, cbb3_Oxidase_I, Cytochrome cbb3 oxidase subunit I.
Cytochrome cbb3 oxidase, the terminal oxidase in the
respiratory chains of proteobacteria, is a multi-chain
transmembrane protein located in the cell membrane. Like
other cytochrome oxidases, it catalyzes the reduction of
O2 and simultaneously pumps protons across the membrane.
Found mainly in proteobacteria, cbb3 is believed to be
a modern enzyme that has evolved independently to
perform a specialized function in microaerobic energy
metabolism. Subunit I contains a heme-copper binuclear
center (the active site where O2 is reduced to water)
formed by a high-spin heme and a copper ion. It also
contains a low-spin heme, believed to participate in the
transfer of electrons to the binuclear center. The cbb3
operon contains four genes (ccoNOQP or fixNOQP), with
ccoN coding for subunit I. Instead of a CuA-containing
subunit II analogous to other cytochrome oxidases, cbb3
utilizes subunits ccoO and ccoP, which contain one and
two hemes, respectively, to transfer electrons to the
binuclear center. The fourth subunit (ccoQ) has been
shown to protect the core complex from proteolytic
degradation by serine proteases. For every reduction of
an O2 molecule, eight protons are taken from the inside
aqueous compartment and four electrons are taken from
cytochrome c on the opposite side of the membrane. The
four electrons and four of the protons are used in the
reduction of O2; the four remaining protons are pumped
across the membrane. This charge separation of four
charges contributes to the electrochemical gradient used
for ATP synthesis. The polar residues that form the D-
and K-pathways in subunit I of other cytochrome c and
ubiquinol oxidases are absent in cbb3. The proton
pathways remain undefined. A pathway for the transfer
of pumped protons beyond the binuclear center also
remains undefined. It is believed that electrons are
passed from cytochrome c (the electron donor) to the
low-spin heme via ccoP and ccoO, respectively, and
directly from the low-spin heme to the binuclear
center..
Length = 493
Score = 36.4 bits (84), Expect = 0.028
Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 8/203 (3%)
Query: 290 WIWGHPEVYILVLPAF-GIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTM 348
W +GH V + F + + + + ++ Y + A+ L HH
Sbjct: 238 WWYGHNAVGFFLTAGFLAMMYYFLPKIAERPVYSYRLSIIGFWALAFLYIWAGPHHLHYT 297
Query: 349 GSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMR--LGKVRFE--VPMMWTLGFMITFLIG 404
+ + ++++ +P+ A + N L T+R K+R + + M G + +
Sbjct: 298 ALPDWLQTLGMVFSVMLWMPSWAGMINGLLTLRGAWDKLRTDPTLRFMVVGGAF--YGLS 355
Query: 405 GMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWG- 463
G +A+ + H + + V H H +G V F F I + P+ + + S
Sbjct: 356 TFEGSFMAIRAVNSLSHYTDWTVGHVHLGALGWVGFITFGAIYFLVPRIWKREWPSPKLV 415
Query: 464 KVSFWCWFVGFYLAFMPLYALGL 486
+ FW +G + F+ ++ G+
Sbjct: 416 EWHFWLATIGIVIYFVAMWISGI 438
>gnl|CDD|35427 KOG0206, KOG0206, KOG0206, P-type ATPase [General function prediction
only].
Length = 1151
Score = 33.3 bits (76), Expect = 0.19
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 288 LIWIWGHPEVY---ILVLPAFGIFSEVVATFSGKR--LFGYNSMVYATLAITIL------ 336
W W Y ++ + +F E T +G + + V+ + I +
Sbjct: 941 RFWGWMLDGFYQSLVIFFLPYLVFEEQAVTSNGLTADYWTLGTTVFTIIVIVVNLKIALE 1000
Query: 337 -SYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRF 387
SY W++H GS F I + + + F + L F
Sbjct: 1001 TSYWTWINHIVIWGSILLWFVFLFIYSELTPAISTPDPFYGVAEHLLSSPSF 1052
>gnl|CDD|146652 pfam04123, DUF373, Domain of unknown function (DUF373). Archaeal
domain of unknown function. Predicted to be an integral
membrane protein with six transmembrane regions.
Length = 344
Score = 31.4 bits (72), Expect = 0.85
Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 67 IGIMYIILSLVMLFRGFA-DAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVA 125
+G++ +IL L +L+RGF D + L + + EG +I V+ I +
Sbjct: 186 LGVILLILGLYLLYRGFGLDDFLRELLKRVRESLYEG--------RITFITYVVSIILIL 237
Query: 126 MPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWLAYPP 185
+ +I G ++ I A V+ FLN W+ A++ I E+ + + +
Sbjct: 238 IGIIYGYLSLEKLSAISAGGVAATFLNGAVPWLA-LAALIAFLGKLIDEYLNGRFRLWRY 296
Query: 186 LSGISYSPG-----VGVDYYIWGLQIAGIGTTLSGINLVVTII 223
++ + G+ Y +++A + I++VV I+
Sbjct: 297 INAPFFVLAIGLVVYGLSGYFLSIELALTSISYLAISIVVGIL 339
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 31.3 bits (71), Expect = 0.88
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 596 SNTATGIILAALSIVFSFAMVWYMWWLALLSFISIVFYTI 635
+ T II +++F M Y W L L+ +I +
Sbjct: 269 GSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVL 308
>gnl|CDD|112384 pfam03563, Bunya_G2, Bunyavirus glycoprotein G2. Bunyavirus has
three genomic segments: small (S), middle-sized (M), and
large (L). The S segment encodes the nucleocapsid and a
non-structural protein. The M segment codes for two
glycoproteins, G1 and G2, and another non-structural
protein (NSm). The L segment codes for an RNA
polymerase. This family contains the G2 glycoprotein
which interacts with the pfam03557 G1 glycoprotein.
Length = 286
Score = 30.5 bits (69), Expect = 1.5
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 7 FHKFIFGRLTINSIPYNIPIVLGTFFVVALVGVSIIFAITY 47
F + I I SI NI +++ T + + II TY
Sbjct: 171 FKRSILPGSMIESICQNIELIILTILTLIIFIFLIILTKTY 211
>gnl|CDD|33001 COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility
and secretion / Intracellular trafficking and
secretion].
Length = 835
Score = 29.9 bits (67), Expect = 2.2
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 22/107 (20%)
Query: 488 GVTRRLSQYEDTTLQVYYVVALLGAV--LIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD 545
G+ L+ Y Y A LG L +G SF ++ RS+ Q D
Sbjct: 385 GLPNGLTLYGGAQAAEDYQAAGLGIGFNLGSLGALSFDVT-------RSRSQLDDDDKQQ 437
Query: 546 GRTLEWSISSPSPQYNFAFTPIVSTIDAWEHMKNRGYRYPSEGFMPI 592
G S Y+ F + GYRY + G+ +
Sbjct: 438 G----QSYRLL---YSKQFQQTGTNFSLA------GYRYSTRGYRTL 471
>gnl|CDD|33686 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 30.0 bits (67), Expect = 2.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 602 IILAALSIVFSFAMVWYMWWL 622
+++AA IV A V +WWL
Sbjct: 41 LMVAASIIVALVAAVLLLWWL 61
>gnl|CDD|146138 pfam03348, Serinc, Serine incorporator (Serinc). This is a family
of eukaryotic membrane proteins which incorporate serine
into membranes and facilitate the synthesis of the
serine-derived lipids phosphatidylserine and
sphingolipid. Members of this family contain 11
transmembrane domains and form intracellular complexes
with key enzymes involved in serine and sphingolipid
biosynthesis.
Length = 426
Score = 29.1 bits (66), Expect = 3.7
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 326 MVYATLAITILSY------TVWLHHFFTMGSGANVNAFFGIMTMVIAV 367
A L +T+L Y TV L+ FFT G G +N FF + +++ V
Sbjct: 179 WYAALLGVTLLMYILSIVLTVLLYIFFTPGDGCGLNKFFISINLILCV 226
>gnl|CDD|37803 KOG2592, KOG2592, KOG2592, Tumor differentially expressed (TDE)
protein [Function unknown].
Length = 426
Score = 28.7 bits (64), Expect = 5.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 321 FGYNSMVYATLAITILSY--TVWLHHFFTMGSGANVNAFFGIMTMVIAV 367
F Y +++ TL + +LS TV L +FT G G N FF + +++ V
Sbjct: 179 FWYAALLGVTLLMYLLSLVATVLLFVYFTPGDGCGENKFFISVNLILCV 227
>gnl|CDD|32399 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 28.7 bits (64), Expect = 5.3
Identities = 12/102 (11%), Positives = 26/102 (25%), Gaps = 5/102 (4%)
Query: 428 AHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLK 487
A ++ ++ + VSF + P Y +
Sbjct: 81 ARLLRELLRRLIIAGLLTLPLLLLSLGLLLGAFLLPWVSFLLATPVLFYGGWPFYRGAWR 140
Query: 488 GVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVS 529
+ R + +A +GA + F + F +
Sbjct: 141 ALRRGR-----LNMDTLVALATIGAYAYSLYATLFPVYFEEA 177
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.331 0.144 0.475
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 9,072,901
Number of extensions: 550552
Number of successful extensions: 2966
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2796
Number of HSP's successfully gapped: 318
Length of query: 671
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 571
Effective length of database: 4,102,837
Effective search space: 2342719927
Effective search space used: 2342719927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (27.2 bits)