RPSBLAST alignment of GI: 254780473 and protein with PDBid: 3mk7

>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri} Length = 474

 Score =  204 bits (520), Expect = 5e-53
 Identities = 65/491 (13%), Positives = 154/491 (31%), Gaps = 48/491 (9%)

Query: 60  TSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVI 119
           T+  +K +   + I+++V    G    + +  Q  +A       L    + ++   H   
Sbjct: 7   TAYSYK-VVRQFAIMTVVWGIVGMGLGVFIAAQ--LAWPFLNFDLPWTSFGRLRPLHTNA 63

Query: 120 MIFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVG 179
           +IF      +     + V        +  P L  F+FW      ++   SL +G  +S  
Sbjct: 64  VIFAFGGCALFATSYYSVQRTCQTT-LFAPKLAAFTFWGWQLVILLAAISLPLGFTSSKE 122

Query: 180 WLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFV 239
           +        I                   I      +    T+ K +   + +       
Sbjct: 123 YAELEWPIDILI----------------TIVWVAYAVVFFGTLAKRKVKHIYVGNWFFGA 166

Query: 240 WTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYI 299
           +    + + ++    I    +           ++       + M+     W   +   + 
Sbjct: 167 FILTVAILHVVNNLEIPVTAM----------KSYSLYAGATDAMVQW---WYGHNAVGFF 213

Query: 300 LVLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFG 359
           L     GI    V   + + ++ Y   +    A+  +      HH           +   
Sbjct: 214 LTAGFLGIMYYFVPKQAERPVYSYRLSIVHFWALITVYIWAGPHHLHYTALPDWAQSLGM 273

Query: 360 IMTMVIAVPTGAKIFNWLFTMRLG--KVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPAD 417
           +M++++  P+   + N + T+     K+R +  + + +  +  + +    G ++A+   +
Sbjct: 274 VMSLILLAPSWGGMINGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVN 333

Query: 418 FTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLN--SFWGKVSFWCWFVGFY 475
              H + + + H H   +G V       + +  PK FG +           FW   +G  
Sbjct: 334 ALSHYTDWTIGHVHAGALGWVAMVSIGALYHLVPKVFGREQMHSIGLINTHFWLATIGTV 393

Query: 476 LAFMPLYALGLKGVTRRLSQYEDTTLQ-----------VYYVVALLGAVLIGIGVFSFVL 524
           L    ++  G+       +  +D TL              +VV ++G  +   G+     
Sbjct: 394 LYIASMWVNGIAQGLMWRAINDDGTLTYSFVESLEASHPGFVVRMIGGAIFFAGMLVMAY 453

Query: 525 SFIVSFLNRSK 535
           +   +      
Sbjct: 454 NTWRTVQAAKP 464