RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780473|ref|YP_003064886.1| cytochrome O ubiquinol oxidase subunit I [Candidatus Liberibacter asiaticus str. psy62] (671 letters) >d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]} Length = 514 Score = 463 bits (1194), Expect = e-131 Identities = 192/518 (37%), Positives = 293/518 (56%), Gaps = 9/518 (1%) Query: 55 WKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFT 114 W S +HK IG +Y++ G A ++++R + G D Y+ + T Sbjct: 3 INRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQP---GTLLGDDQIYNVVVT 59 Query: 115 AHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIG 173 AH +MIFF+ MP MI G N++VPL IGA D++FP +NN SFW+ ++++ S + Sbjct: 60 AHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVE 119 Query: 174 EFASVGWLAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMM 233 A GW YPPL+G G VD I+ L +AG+ + L IN + TII M+ P M+ Sbjct: 120 AGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQY 179 Query: 234 KMPVFVWTAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWG 293 + P+FVW+ + ++++ + P+L A + +L DR + T FF GG+P++Y +L W +G Sbjct: 180 QTPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFG 239 Query: 294 HPEVYILVLPAFGIFSEVVATFSGKR-LFGYNSMVYATLAITILSYTVWLHHFFTMGSGA 352 HPEVYIL+LP FG+ S +V +SGK+ FGY MV+A ++I L + VW HH FT+G Sbjct: 240 HPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDV 299 Query: 353 NVNAFFGIMTMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLA 412 + A+F TM+IA+PTG K+F+WL T+ G +++ MMW LGF+ F +GG+TG++LA Sbjct: 300 DTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLA 359 Query: 413 VPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFV 472 D LH++ ++VAHFH + G VF + G V+WFP GY LN W K+ F FV Sbjct: 360 NSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFV 419 Query: 473 GFYLAFMPLYALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLN 532 G + F P + LGL G+ RR S Y D ++ ++ +G+ + V V +F + Sbjct: 420 GVNMTFFPQHFLGLSGMPRRYSDYPD-AYTMWNTISSMGSFISLTAVMLMVFIIWEAFAS 478 Query: 533 RSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTPIVST 570 + ++ + LEW P P + F V+ Sbjct: 479 K---REVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNL 513 >d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]} Length = 538 Score = 447 bits (1151), Expect = e-126 Identities = 199/542 (36%), Positives = 302/542 (55%), Gaps = 37/542 (6%) Query: 53 YLWKEWFTSVDHKKIGIMYIILSLVMLFRGFADAIMMRLQ-------------------- 92 + WF S +HK IG++Y+ ++ A + MR++ Sbjct: 2 GFFTRWFMSTNHKDIGVLYLFTGGLVGLISVAFTVYMRMELMAPGVQFMCAEHLESGLVK 61 Query: 93 ----QAIASGGGEGYLDAHHYDQIFTAHGVIMIFFVAMP-MITGIMNFVVPLQIGARDVS 147 S + H ++ + T HG++M+FFV +P + G N+ +PL IGA D++ Sbjct: 62 GFFQSLWPSAVENCTPNGHLWNVMITGHGILMMFFVVIPALFGGFGNYFMPLHIGAPDMA 121 Query: 148 FPFLNNFSFWMTVAGAVVIMCSLFIGEF-----ASVGWLAYPPLSGISYSPGVGVDYYIW 202 FP +NN S+W+ VAG + + SLF + +GW+ YPPL + G D I+ Sbjct: 122 FPRMNNLSYWLYVAGTSLAVASLFAPGGNGQLGSGIGWVLYPPL--STSESGYSTDLAIF 179 Query: 203 GLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWTAFCSNIMIIAAFPILTATLFL 262 + ++G + L IN++ T + MR PGMTM K+P+F W+ F + +I+ A P+L + + Sbjct: 180 AVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTAWLILLALPVLAGAITM 239 Query: 263 LTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILVLPAFGIFSEVVATFSGKRLFG 322 L DR GT FF GG+P++Y +++W +GHPEVYI+VLPAFGI S V+ATF+ K +FG Sbjct: 240 LLTDRNFGTTFFQPSGGGDPVLYQHILWFFGHPEVYIIVLPAFGIVSHVIATFAKKPIFG 299 Query: 323 YNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIMTMVIAVPTGAKIFNWLFTMRL 382 Y MVYA +AI +L + VW HH +T G ++F + TMVIAVPTG KIF+W+ TM Sbjct: 300 YLPMVYAMVAIGVLGFVVWAHHMYTAGLSLTQQSYFMMATMVIAVPTGIKIFSWIATMWG 359 Query: 383 GKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGL 442 G + + PM+W LGF+ F +GG+TG++L+ D H++ ++VAHFH + G VFG+ Sbjct: 360 GSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMSLGAVFGI 419 Query: 443 FAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPLYALGLKGVTRRLSQYEDTTLQ 502 FAGI +W K G Q + GK+ FW FVG L F P + LG +G+ RR Y + Sbjct: 420 FAGIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFFPQHFLGRQGMPRRYIDYPE-AFA 478 Query: 503 VYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWD--GRTLEWSISSPSPQY 560 + V+ LGA L F+ + + T + W+ TLEW+++SP P++ Sbjct: 479 TWNFVSSLGAFLSFASFLFFLGVIFYTL--TRGARVTANNYWNEHADTLEWTLTSPPPEH 536 Query: 561 NF 562 F Sbjct: 537 TF 538 >d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]} Length = 501 Score = 403 bits (1037), Expect = e-113 Identities = 348/501 (69%), Positives = 413/501 (82%) Query: 62 VDHKKIGIMYIILSLVMLFRGFADAIMMRLQQAIASGGGEGYLDAHHYDQIFTAHGVIMI 121 VDHK++GIMYII+++VML RGFADAIMMR QQA+AS G G+L HHYDQIFTAHGVIMI Sbjct: 1 VDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMI 60 Query: 122 FFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGWL 181 FFVAMP + G+MN VVPLQIGARDV+FPFLNN SFW TV G +++ SL +GEFA GWL Sbjct: 61 FFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGEFAQTGWL 120 Query: 182 AYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVWT 241 AYPPLSGI YSPGVGVDY+IW LQ++GIGTTL+GIN VTI+KMR PGMTM KMPVF W Sbjct: 121 AYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWA 180 Query: 242 AFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYILV 301 + C+N++IIA+FPILT T+ LLTLDRY+GT+FFTN +GGN MMYINLIW WGHPEVYIL+ Sbjct: 181 SLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYINLIWAWGHPEVYILI 240 Query: 302 LPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFTMGSGANVNAFFGIM 361 LP FG+FSE+ ATFS KRLFGY S+V+AT+ IT+LS+ VWLHHFFTMG+GANVNAFFGI Sbjct: 241 LPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGIT 300 Query: 362 TMVIAVPTGAKIFNWLFTMRLGKVRFEVPMMWTLGFMITFLIGGMTGVLLAVPPADFTLH 421 TM+IA+PTG KIFNWLFTM G++ F M+WT+GF++TF +GGMTGVLLAVP ADF LH Sbjct: 301 TMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLH 360 Query: 422 NSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNSFWGKVSFWCWFVGFYLAFMPL 481 NSLFL+AHFHN IIGGVVFG FAG+ YW+PKAFG++LN WGK +FW W +GF++AFMPL Sbjct: 361 NSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNETWGKRAFWFWIIGFFVAFMPL 420 Query: 482 YALGLKGVTRRLSQYEDTTLQVYYVVALLGAVLIGIGVFSFVLSFIVSFLNRSKLQDTIG 541 YALG G+TRRLSQ D ++A GAVLI +G+ V+ VS +R + +D G Sbjct: 421 YALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALGILCLVIQMYVSIRDRDQNRDLTG 480 Query: 542 DPWDGRTLEWSISSPSPQYNF 562 DPW GRTLEW+ SSP P YNF Sbjct: 481 DPWGGRTLEWATSSPPPFYNF 501 >d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]} Length = 549 Score = 265 bits (679), Expect = 8e-72 Identities = 111/533 (20%), Positives = 187/533 (35%), Gaps = 54/533 (10%) Query: 64 HKKIGIMYIILSLVMLFRGFADAIMMRLQQA---IASGGGEGYLDAHHYDQIFTAHGVIM 120 KK + +++L + L G L Y Q T HGV+ Sbjct: 4 EKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLN 63 Query: 121 IFFVAMPMITGIMNFVVPLQIGARDVSFPFLNNFSFWMTVAGAVVIMCSLFIGEFASVGW 180 IM ++ ++ R L S+WM G VV L E A+V + Sbjct: 64 AIVFTQLFAQAIMVYLPARELNMRP--NMGLMWLSWWMAFIGLVVAALPLLANE-ATVLY 120 Query: 181 LAYPPLSGISYSPGVGVDYYIWGLQIAGIGTTLSGINLVVTIIKMRCPGMTMMKMPVFVW 240 YPPL ++ +G ++ T I +V+ + + P+ + Sbjct: 121 TFYPPLK-GHWAFYLGASVFVLS--------TWVSIYIVLDLWRRWKAANPGKVTPLVTY 171 Query: 241 TAFCSNIMIIAAFPILTATLFLLTLDRYIGTNFFTNHLGGNPMMYINLIWIWGHPEVYIL 300 A +M A L L L G G +P++ L W GHP VY Sbjct: 172 MAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVE-----GVDPLVARTLFWWTGHPIVYFW 226 Query: 301 VLPAFGIFSEVVATFSGKRLFGYNSMVYATLAITILSYTVWLHHFFT-MGSGANVNAFFG 359 +LPA+ I ++ +G +L A L +LS V HH F G Sbjct: 227 LLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHS 286 Query: 360 IMTMVIAVPT-------------------GAKIFNWLFTMRLGKVRFEVPMMWTLGFMIT 400 ++T+ +AVP+ G +F W+ + F P++ LGF+ Sbjct: 287 VLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLGFIP- 345 Query: 401 FLIGGMTGVLLAVPPADFTLHNSLFLVAHFHNTIIGGVVFGLFAGIVYWFPKAFGYQLNS 460 GG G++ A D+ +HN+ ++ HFH + V + + P G ++ Sbjct: 346 ---GGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKPISD 402 Query: 461 FWGKVS---FWCWFVGFYLAFMPLYALGLKGVTRRLSQYE----DTTLQVYYVVALLGAV 513 ++ W WF+G + + L+ GL V RR + V V +L + Sbjct: 403 AQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPDAYPHAAVPMVFNVLAGI 462 Query: 514 LIGIGVFSFVLSFIVSFLNRSKLQDTIGDPWDGRTLEWSISSPSPQYNFAFTP 566 ++ + + F+ L+R + + P IS P + Sbjct: 463 VLLVALLLFIYGLFSVLLSRERKPELAEAPL---PFAEVISGPEDRRLVLAMD 512 >d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]} Length = 200 Score = 28.2 bits (62), Expect = 2.1 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 3/98 (3%) Query: 557 SPQYNFAFTPIVSTIDAWEHMKNRGYRYPSEGFMPIHMPSNTATGIILAALSIVFSFAMV 616 +P YNF + + +RY G P + + +I + I Sbjct: 93 APMYNFNISTQLKNYFDLVARAGVTFRYTENG--PEGLVTGKKAIVITSRGGIHKDGPTD 150 Query: 617 WYMWWL-ALLSFISIVFYTIFHTFNYNDGYEVSAKDVA 653 +L L FI I G E++AK + Sbjct: 151 LVTPYLSTFLGFIGITDVKFVFAEGIAYGPEMAAKAQS 188 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.331 0.144 0.475 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,751,244 Number of extensions: 135835 Number of successful extensions: 483 Number of sequences better than 10.0: 1 Number of HSP's gapped: 416 Number of HSP's successfully gapped: 73 Length of query: 671 Length of database: 2,407,596 Length adjustment: 91 Effective length of query: 580 Effective length of database: 1,158,166 Effective search space: 671736280 Effective search space used: 671736280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 56 (25.6 bits)