HHsearch alignment for GI: 254780474 and conserved domain: MTH00008
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated.
Probab=100.00 E-value=0 Score=408.03 Aligned_cols=201 Identities=19% Similarity=0.328 Sum_probs=178.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf 64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r 32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV 111 (332)
Q Consensus 32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~ 111 (332)
T Consensus 6 ql~fqd~~S~~m~~l~~fHd~vm~ii~~I~~~V~~~l~~~~~~~~~~~-------~~~~~~~LE~~WTiiP~liL~~la~ 78 (228)
T MTH00008 6 QLSFQDAASPVMLQLISFHDHALLVLTLVTTVVGYALTSLMFNSYSNR-------YILEAQQIETIWTILPALILLFLAF 78 (228)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 379978689899999999979999999999999999999997256645-------4458701258899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf 99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r 112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV 170 (332)
Q Consensus 112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l 170 (332)
T Consensus 79 pS~~~ly~~~~--------------~~~~~~tikv~G~QWyW~YeY~d~~~~~~dsym~~~~~~~~g~~rll~vdn~lvl 144 (228)
T MTH00008 79 PSLHLLYLMDE--------------ISNPSITVKTIGHQWYWSYEYTDFSKLEFDSYMLPDSDLSPGDFRLLEVDHRAVA 144 (228)
T ss_pred HHHHHHHCCCC--------------CCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCEEECCCCEEEE
T ss_conf 99999864654--------------6888614887788534899813676642235317744347887434413551776
Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS 250 (332)
Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~ 250 (332)
T Consensus 145 P~~~~ir~lvtS~DVIHSw~vPslgiK~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~V~~v~~~~f~~W~~ 224 (228)
T MTH00008 145 PMNTEIRMLVTAADVLHSWTIPSLGVKVDAVPGRLNQIGFTADRPGVFYGQCSEICGANHSFMPIALEIIDTKSFIKWVL 224 (228)
T ss_pred EEEEEEEEEECCCCCCEEEECCCCCCEEECCCCCEEEEEEEECCCEEEEEEEHHHCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 55212666301565412032441262320358822899998179755899828880978156957999989999999998
Q ss_pred HHH
Q ss_conf 986
Q gi|254780474|r 251 KVK 253 (332)
Q Consensus 251 ~~k 253 (332)
T Consensus 225 ~~~ 227 (228)
T MTH00008 225 SNS 227 (228)
T ss_pred HCC
T ss_conf 656