HHsearch alignment for GI: 254780474 and conserved domain: MTH00008

>MTH00008 COX2 cytochrome c oxidase subunit II; Validated.
Probab=100.00  E-value=0  Score=408.03  Aligned_cols=201  Identities=19%  Similarity=0.328  Sum_probs=178.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
Q ss_conf             64326898989999999999999999999999999999998853046777777875345661255302278999999999
Q gi|254780474|r   32 EFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAV  111 (332)
Q Consensus        32 ~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~hs~~lEi~wt~iP~iIi~~L~~  111 (332)
T Consensus         6 ql~fqd~~S~~m~~l~~fHd~vm~ii~~I~~~V~~~l~~~~~~~~~~~-------~~~~~~~LE~~WTiiP~liL~~la~   78 (228)
T MTH00008          6 QLSFQDAASPVMLQLISFHDHALLVLTLVTTVVGYALTSLMFNSYSNR-------YILEAQQIETIWTILPALILLFLAF   78 (228)
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             379978689899999999979999999999999999999997256645-------4458701258899999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC---------------------CCCCEEEEE
Q ss_conf             99988775134442000012446788888668999998436999962678---------------------774306896
Q gi|254780474|r  112 ITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQ---------------------VAIINELVV  170 (332)
Q Consensus       112 ~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~g---------------------iatvneL~l  170 (332)
T Consensus        79 pS~~~ly~~~~--------------~~~~~~tikv~G~QWyW~YeY~d~~~~~~dsym~~~~~~~~g~~rll~vdn~lvl  144 (228)
T MTH00008         79 PSLHLLYLMDE--------------ISNPSITVKTIGHQWYWSYEYTDFSKLEFDSYMLPDSDLSPGDFRLLEVDHRAVA  144 (228)
T ss_pred             HHHHHHHCCCC--------------CCCCCCEEEEEEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCEEECCCCEEEE
T ss_conf             99999864654--------------6888614887788534899813676642235317744347887434413551776


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708899999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS  250 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s~~~f~~Wv~  250 (332)
T Consensus       145 P~~~~ir~lvtS~DVIHSw~vPslgiK~DavPGr~n~~~~~~~~~G~y~GqCsElCG~~Hs~Mpi~V~~v~~~~f~~W~~  224 (228)
T MTH00008        145 PMNTEIRMLVTAADVLHSWTIPSLGVKVDAVPGRLNQIGFTADRPGVFYGQCSEICGANHSFMPIALEIIDTKSFIKWVL  224 (228)
T ss_pred             EEEEEEEEEECCCCCCEEEECCCCCCEEECCCCCEEEEEEEECCCEEEEEEEHHHCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf             55212666301565412032441262320358822899998179755899828880978156957999989999999998


Q ss_pred             HHH
Q ss_conf             986
Q gi|254780474|r  251 KVK  253 (332)
Q Consensus       251 ~~k  253 (332)
T Consensus       225 ~~~  227 (228)
T MTH00008        225 SNS  227 (228)
T ss_pred             HCC
T ss_conf             656